Difference between revisions of "NONHSAT129523"
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sequence = <dnaseq>attacaaggcggaagtcctgcccgagaggacagtccccaggccttgctaagcatgcgtggtatcaagaggtgcattgaggcgctcctgcagcctcctcccggcacgggactcctcacaacccccagcctcagcttccctgacagggcaggggctcactcttctccactccgggccaggaacgcagcctgcttgccttttgtccaattgggtgctctttctttgcgactgatacaaagtgggaacaaactccgcttccggtgaTGCCCGGGCCCCAGGAGGCTGGGGGAGAAGTGCACGCTGCCCAGCCTTCAACCTGAACTGCCCCCAGCACTTCCGAGCCCCGACCCCTGCAGCTGTGAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCATTGCAGAGGTCTCCCTTGCAGCAAGAGATCTGGGAGTCCACAACGGCACTTAACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGACGCTCACTTTCTGGGAGACACAGACCCCATCCAGGAAGGGGCACGAGACCACGCTGCAGGAGGCCCCTTCCAAGACCGCCAAGCATCTGTAGCAGCGCAGACCCTGAGCTGGGAGAGAGGGCAAGaaaacacacccctggtggagatttaagatgctaatgacacatgcgacgtatgagcaagcaggtgcagctactgcacgtgtgcacccagaggacccccccagaacatgcttcctagcaacacctctgcccacccgctgattctctcggcaccacgggaaccaccttctctactctcactgaacacccctgggatgtatctgtaaaaattggaacacctttcggctagaaaccagaggaagccgctcatgacacccgggagctcacagaggctctgaagtttctattcaagaaaacaactccagatggggctgatctggaagacaagtaacatcttccttttcttggtgctcgcctgccgtgctctaggtgcttttagagatgctggtctgtgtgctagggaagcgatgaaccatactgttagtctattaaacataactcaacctggctggctttccatgactaccaaacgctgggaatatgccagacctgtgcccgtggaagactctggcctcccagcacacctccaggaacaaactccctggcccgcaggatagggatagcagccccaaccgtcaatacaaagggattttactgagtgggctcatgggttctttaagttccccctcttaacgatcaacggtaattcaaacgtcccaaaaggagaaatgctttcttagcatatcttttacctggagtatttccccttctgcctttacagcaatcatgccagttctaccacttttgcaagaaagctccaagagagtcagtgtagctgaaactttgtcactgggtcacctatCTAGTCCATATGTCTGCAGGAATTATACTGATAAATGGACAACTCACCATGCAATCAATCTCCCGCTCTATCCTGTTCCCTGACCGGCATGGTTTCTACTTCCTGTCAGCACAACTAGGACGTCTGGTTTCTGCTGGGCT</dnaseq>| | sequence = <dnaseq>attacaaggcggaagtcctgcccgagaggacagtccccaggccttgctaagcatgcgtggtatcaagaggtgcattgaggcgctcctgcagcctcctcccggcacgggactcctcacaacccccagcctcagcttccctgacagggcaggggctcactcttctccactccgggccaggaacgcagcctgcttgccttttgtccaattgggtgctctttctttgcgactgatacaaagtgggaacaaactccgcttccggtgaTGCCCGGGCCCCAGGAGGCTGGGGGAGAAGTGCACGCTGCCCAGCCTTCAACCTGAACTGCCCCCAGCACTTCCGAGCCCCGACCCCTGCAGCTGTGAGGGCCCAGGGGCTGCTGGCTGCCAGGACCACCGCATTGCAGAGGTCTCCCTTGCAGCAAGAGATCTGGGAGTCCACAACGGCACTTAACCTGCCCTCTGCCCTGGCACCCCAGGGACTCACTGCCAAAGACGCTCACTTTCTGGGAGACACAGACCCCATCCAGGAAGGGGCACGAGACCACGCTGCAGGAGGCCCCTTCCAAGACCGCCAAGCATCTGTAGCAGCGCAGACCCTGAGCTGGGAGAGAGGGCAAGaaaacacacccctggtggagatttaagatgctaatgacacatgcgacgtatgagcaagcaggtgcagctactgcacgtgtgcacccagaggacccccccagaacatgcttcctagcaacacctctgcccacccgctgattctctcggcaccacgggaaccaccttctctactctcactgaacacccctgggatgtatctgtaaaaattggaacacctttcggctagaaaccagaggaagccgctcatgacacccgggagctcacagaggctctgaagtttctattcaagaaaacaactccagatggggctgatctggaagacaagtaacatcttccttttcttggtgctcgcctgccgtgctctaggtgcttttagagatgctggtctgtgtgctagggaagcgatgaaccatactgttagtctattaaacataactcaacctggctggctttccatgactaccaaacgctgggaatatgccagacctgtgcccgtggaagactctggcctcccagcacacctccaggaacaaactccctggcccgcaggatagggatagcagccccaaccgtcaatacaaagggattttactgagtgggctcatgggttctttaagttccccctcttaacgatcaacggtaattcaaacgtcccaaaaggagaaatgctttcttagcatatcttttacctggagtatttccccttctgcctttacagcaatcatgccagttctaccacttttgcaagaaagctccaagagagtcagtgtagctgaaactttgtcactgggtcacctatCTAGTCCATATGTCTGCAGGAATTATACTGATAAATGGACAACTCACCATGCAATCAATCTCCCGCTCTATCCTGTTCCCTGACCGGCATGGTTTCTACTTCCTGTCAGCACAACTAGGACGTCTGGTTTCTGCTGGGCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG051472]] | + | [[Category:Sense]][[Category:NONHSAG051472]][[Category:Transcripts]] |
Latest revision as of 07:10, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129523 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1554 nt |
Genomic location |
chr8+:144120626..144135355 |
Exon number |
6 |
Exons |
144120626..144120986,144124595..144124679,144126066..144126234,144129096..144129231,144130626..144130715,144134643..144135355 |
Genome context |
|
Sequence |
000001 attacaaggc ggaagtcctg cccgagagga cagtccccag gccttgctaa gcatgcgtgg tatcaagagg tgcattgagg 000080
000081 cgctcctgca gcctcctccc ggcacgggac tcctcacaac ccccagcctc agcttccctg acagggcagg ggctcactct 000160 000161 tctccactcc gggccaggaa cgcagcctgc ttgccttttg tccaattggg tgctctttct ttgcgactga tacaaagtgg 000240 000241 gaacaaactc cgcttccggt gaTGCCCGGG CCCCAGGAGG CTGGGGGAGA AGTGCACGCT GCCCAGCCTT CAACCTGAAC 000320 000321 TGCCCCCAGC ACTTCCGAGC CCCGACCCCT GCAGCTGTGA GGGCCCAGGG GCTGCTGGCT GCCAGGACCA CCGCATTGCA 000400 000401 GAGGTCTCCC TTGCAGCAAG AGATCTGGGA GTCCACAACG GCACTTAACC TGCCCTCTGC CCTGGCACCC CAGGGACTCA 000480 000481 CTGCCAAAGA CGCTCACTTT CTGGGAGACA CAGACCCCAT CCAGGAAGGG GCACGAGACC ACGCTGCAGG AGGCCCCTTC 000560 000561 CAAGACCGCC AAGCATCTGT AGCAGCGCAG ACCCTGAGCT GGGAGAGAGG GCAAGaaaac acacccctgg tggagattta 000640 000641 agatgctaat gacacatgcg acgtatgagc aagcaggtgc agctactgca cgtgtgcacc cagaggaccc ccccagaaca 000720 000721 tgcttcctag caacacctct gcccacccgc tgattctctc ggcaccacgg gaaccacctt ctctactctc actgaacacc 000800 000801 cctgggatgt atctgtaaaa attggaacac ctttcggcta gaaaccagag gaagccgctc atgacacccg ggagctcaca 000880 000881 gaggctctga agtttctatt caagaaaaca actccagatg gggctgatct ggaagacaag taacatcttc cttttcttgg 000960 000961 tgctcgcctg ccgtgctcta ggtgctttta gagatgctgg tctgtgtgct agggaagcga tgaaccatac tgttagtcta 001040 001041 ttaaacataa ctcaacctgg ctggctttcc atgactacca aacgctggga atatgccaga cctgtgcccg tggaagactc 001120 001121 tggcctccca gcacacctcc aggaacaaac tccctggccc gcaggatagg gatagcagcc ccaaccgtca atacaaaggg 001200 001201 attttactga gtgggctcat gggttcttta agttccccct cttaacgatc aacggtaatt caaacgtccc aaaaggagaa 001280 001281 atgctttctt agcatatctt ttacctggag tatttcccct tctgccttta cagcaatcat gccagttcta ccacttttgc 001360 001361 aagaaagctc caagagagtc agtgtagctg aaactttgtc actgggtcac ctatCTAGTC CATATGTCTG CAGGAATTAT 001440 001441 ACTGATAAAT GGACAACTCA CCATGCAATC AATCTCCCGC TCTATCCTGT TCCCTGACCG GCATGGTTTC TACTTCCTGT 001520 001521 CAGCACAACT AGGACGTCTG GTTTCTGCTG GGCT |
Predicted Small Protein
Name | NONHSAT129523_smProtein_917:1168 |
Length | 84 |
Molecular weight | 9252.6643 |
Aromaticity | 0.0963855421687 |
Instability index | 69.6337349398 |
Isoelectric point | 7.84796142578 |
Runs | 13 |
Runs residual | 0.0165997322624 |
Runs probability | 0.0353430353431 |
Amino acid sequence | MGLIWKTSNIFLFLVLACRALGAFRDAGLCAREAMNHTVSLLNITQPGWLSMTTKRWEYA RPVPVEDSGLPAHLQEQTPWPAG |
Secondary structure | LLLEEELLHHHHHHHHHHHHHHHHHHHLHHHHHHHHLLHHHHHLLLLLLLLLLLLLHHHL LLLLLLLLLLLLLHHHLLLLLLL |
PRMN | - |
PiMo | - |