Difference between revisions of "NONHSAT107921"
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sequence = <dnaseq>GAGTCCACCGGTAAATGGGTGTTGCATGGTGTGGAGTATGCTGCTTAGTCCGCTTTCAGAAGCTCAAGGGTGACCTGGGAGTGCTTTGACTACTCCTAGCAGTAAGACGAATGCATTTGCACTTCCAGCTGCATTTCTTCGGCTTCTTGTACAGTCTTGAGTCTGGGTCAACACATGAGACGTCCCCAGGTGCCTCTGCATTTGCTGACCAATGGTCACTTCTGTTGCTGCCATCTAAGAGCTCAGAGGGAGATCCACTCTCGAGTCCAGGGCCAGAAGCAGGTGTGAGCTATGGCACCCGGCCTGACTGGTGTCTTTATAAGAAGAGGAGATGAAGACAGAGACACACACAGAGGAGGCGTGGGGAGAGACCAACCCTGCCGTCACCTTGATCCTGGACTTCCAGCCTCCAGAACTAATTCAGGTGAAGATGAGCTGAACCTGCTCCCTGGCCTTCCCCTAGTTTCTGTGGCTTGTGACAGAAGGTGGAAAGGACCAACATGGAAGAGATGCATGAACAAACTGCATGTTTTCAGCAAACGTTTCCAAGGGTTATCTTAGCTGGATGCGACTGTACTTTGGAAGAGTATTTTAGGACTCCATGTCTTTATGACCCTAGCTTCTGCTTTAAAGTTGAAGAACTGAGTCCTGTTATCAGCTTCATCTCTGTTTGGCTCCCAAAGTAAGGGAATTGTTTTGCAAAAGTAAGATGAGTTTTATCAGCAAGCTTTGTAGAAACTTTACCCAAAAAGGAAAACCAGATTCCCACTCAGGCTGTTTTGTAAGAGACGGCACAAACTCTGGGAGTTTGACCTCAAAGATGTATCACTGAGCAAAACAAAATAGGCCTGTTATTTCTGGAACCCATGGTTCTCATGTAGTTCTGTATCAGGTGGAAAATGGTTCAGTCATTGTTACTTCTTTTTAACGAATTTCTTTTTCTGATTATAAAAATCAATATATGCTCTTCGTGAAACACTGAAAAATACAGACGTAAAACATAAGTAAACAATAAACATTCTGCATTCCACCACATGGAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GAGTCCACCGGTAAATGGGTGTTGCATGGTGTGGAGTATGCTGCTTAGTCCGCTTTCAGAAGCTCAAGGGTGACCTGGGAGTGCTTTGACTACTCCTAGCAGTAAGACGAATGCATTTGCACTTCCAGCTGCATTTCTTCGGCTTCTTGTACAGTCTTGAGTCTGGGTCAACACATGAGACGTCCCCAGGTGCCTCTGCATTTGCTGACCAATGGTCACTTCTGTTGCTGCCATCTAAGAGCTCAGAGGGAGATCCACTCTCGAGTCCAGGGCCAGAAGCAGGTGTGAGCTATGGCACCCGGCCTGACTGGTGTCTTTATAAGAAGAGGAGATGAAGACAGAGACACACACAGAGGAGGCGTGGGGAGAGACCAACCCTGCCGTCACCTTGATCCTGGACTTCCAGCCTCCAGAACTAATTCAGGTGAAGATGAGCTGAACCTGCTCCCTGGCCTTCCCCTAGTTTCTGTGGCTTGTGACAGAAGGTGGAAAGGACCAACATGGAAGAGATGCATGAACAAACTGCATGTTTTCAGCAAACGTTTCCAAGGGTTATCTTAGCTGGATGCGACTGTACTTTGGAAGAGTATTTTAGGACTCCATGTCTTTATGACCCTAGCTTCTGCTTTAAAGTTGAAGAACTGAGTCCTGTTATCAGCTTCATCTCTGTTTGGCTCCCAAAGTAAGGGAATTGTTTTGCAAAAGTAAGATGAGTTTTATCAGCAAGCTTTGTAGAAACTTTACCCAAAAAGGAAAACCAGATTCCCACTCAGGCTGTTTTGTAAGAGACGGCACAAACTCTGGGAGTTTGACCTCAAAGATGTATCACTGAGCAAAACAAAATAGGCCTGTTATTTCTGGAACCCATGGTTCTCATGTAGTTCTGTATCAGGTGGAAAATGGTTCAGTCATTGTTACTTCTTTTTAACGAATTTCTTTTTCTGATTATAAAAATCAATATATGCTCTTCGTGAAACACTGAAAAATACAGACGTAAAACATAAGTAAACAATAAACATTCTGCATTCCACCACATGGAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG043104]] | + | [[Category:Antisense]][[Category:NONHSAG043104]][[Category:Transcripts]] |
Latest revision as of 01:46, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT107921 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
1054 nt |
| Genomic location |
chr6-:17501591..17511496 |
| Exon number |
4 |
| Exons |
17501591..17502218,17503445..17503579,17508804..17508924,17511336..17511496 |
| Genome context |
|
| Sequence |
000001 GAGTCCACCG GTAAATGGGT GTTGCATGGT GTGGAGTATG CTGCTTAGTC CGCTTTCAGA AGCTCAAGGG TGACCTGGGA 000080
000081 GTGCTTTGAC TACTCCTAGC AGTAAGACGA ATGCATTTGC ACTTCCAGCT GCATTTCTTC GGCTTCTTGT ACAGTCTTGA 000160 000161 GTCTGGGTCA ACACATGAGA CGTCCCCAGG TGCCTCTGCA TTTGCTGACC AATGGTCACT TCTGTTGCTG CCATCTAAGA 000240 000241 GCTCAGAGGG AGATCCACTC TCGAGTCCAG GGCCAGAAGC AGGTGTGAGC TATGGCACCC GGCCTGACTG GTGTCTTTAT 000320 000321 AAGAAGAGGA GATGAAGACA GAGACACACA CAGAGGAGGC GTGGGGAGAG ACCAACCCTG CCGTCACCTT GATCCTGGAC 000400 000401 TTCCAGCCTC CAGAACTAAT TCAGGTGAAG ATGAGCTGAA CCTGCTCCCT GGCCTTCCCC TAGTTTCTGT GGCTTGTGAC 000480 000481 AGAAGGTGGA AAGGACCAAC ATGGAAGAGA TGCATGAACA AACTGCATGT TTTCAGCAAA CGTTTCCAAG GGTTATCTTA 000560 000561 GCTGGATGCG ACTGTACTTT GGAAGAGTAT TTTAGGACTC CATGTCTTTA TGACCCTAGC TTCTGCTTTA AAGTTGAAGA 000640 000641 ACTGAGTCCT GTTATCAGCT TCATCTCTGT TTGGCTCCCA AAGTAAGGGA ATTGTTTTGC AAAAGTAAGA TGAGTTTTAT 000720 000721 CAGCAAGCTT TGTAGAAACT TTACCCAAAA AGGAAAACCA GATTCCCACT CAGGCTGTTT TGTAAGAGAC GGCACAAACT 000800 000801 CTGGGAGTTT GACCTCAAAG ATGTATCACT GAGCAAAACA AAATAGGCCT GTTATTTCTG GAACCCATGG TTCTCATGTA 000880 000881 GTTCTGTATC AGGTGGAAAA TGGTTCAGTC ATTGTTACTT CTTTTTAACG AATTTCTTTT TCTGATTATA AAAATCAATA 000960 000961 TATGCTCTTC GTGAAACACT GAAAAATACA GACGTAAAAC ATAAGTAAAC AATAAACATT CTGCATTCCA CCACATGGAA 001040 001041 AAAAAAAAAA AAAA |
Predicted Small Protein
| Name | NONHSAT107921_smProtein_110:334 |
| Length | 75 |
| Molecular weight | 8215.0786 |
| Aromaticity | 0.135135135135 |
| Instability index | 56.3864864865 |
| Isoelectric point | 6.38153076172 |
| Runs | 7 |
| Runs residual | 0.0480553724456 |
| Runs probability | 0.0406288641583 |
| Amino acid sequence | MHLHFQLHFFGFLYSLESGSTHETSPGASAFADQWSLLLLPSKSSEGDPLSSPGPEAGVS YGTRPDWCLYKKRR |
| Secondary structure | LEEEEEEEEEEEEEEELLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL LLLLLLLEEEEELL |
| PRMN | - |
| PiMo | - |
