Difference between revisions of "NONHSAT108630"

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sequence = <dnaseq>tgggaatttaactgctggtttatgttcttccagagctccctctttgcccactagcagggcattagctggtgctgaagacagtggctgcttggcgagcctggatctccaagtgaccccctcagcaactcctgatgaacagGACTGAAGCCAATATTAAAGCAAGTCAACCAAAGGTTCTCTGGTGTAGACAAGACAGCAAAAGGACAGACTACCTTGTGGAACCTAGCATTGTTCTCCTTCTGCAGCACTAAGTAACATTTGTTCTCCGTTAAGATCTTTGCAAACCACACACAAGAATTGCTGGTCATCCTGCCAATAGATGCTGCTCACAGAACCAAATTTCCTGTGCTGAATTGTCACTCATGGGCTTGAGAGTAGGAGACTGGAGACCAAGGTGGCTAGAATCCAGTTGGGCCTGATGTCTCCCTGTTGAAAGGGCTCCTTGTGGAATGAATAGCACATGGCTCCTGTGGTGGATCTGATAGTGGCATAGCACCAAGTGATGCAGGCCTGCCAGGGGCCACAGACACAGAAGATGCTCCCGGGGTCCCCCATGTACTCCAGACACACTGCAGGCCACCTCTCCCAGCAGGTTGCCAGTCATGGGCCCCATCATCATGACTTCTGTCCAAGGTGTGCTCGGAAATCTCTTCCTTAACTGTGACTTTCTGACAGGTGGAGGATGTGGTCAGGAGTGGGAAAAGGATTCGAGACGGGAAGAGGGAGGGGTTCAGGATGAAGAGAGATAATCTGTGCCACAGATGCTGGCCCTGCAGTTAGCTCCCACCTAGTCCGTGCACACACATTCTAATCCCCTCCCATTCCTTTACATGCTGCGGCCAGAGAGGCCTTTCTCAAAGTGGAAGTCTCATCCTCACTTCTCTGGTTACAGTGCTGGGCCATGGTAACTTACAAGGCTTAGCAGGAACTGTCTGCGCACTCCCCCTTCCTGCCCACTACCTTGTTTCCCTCCAGTTGCGAGAGAAaacattgattgagcattaactatgtgccaggcttgtcctaagtcctttgcatgtattcactcaaacaatcctcacaacattcctatcacatctcccatttcacagtgagggttctaaagcacgtagtgggtgaggaacttgtccagggtcacacaactaagtgggggtggagaaacatcaaatctaggtggtccaggtggtggccagaacccatCAGCACCTCACTACAGCTGCCTCCAGTTTCTCGCTCTAGGAAATActcttccctgtcaactcctgttgtcctctgggctcagttgacatgtcatctccttgaggaggacatcctgagatgctccccgactagggtgggcacccacttccacactccAAAtgcctatttgacctgtgtatcgctgcatccccactgcctggcagatagcaggcccc</dnaseq>|
 
sequence = <dnaseq>tgggaatttaactgctggtttatgttcttccagagctccctctttgcccactagcagggcattagctggtgctgaagacagtggctgcttggcgagcctggatctccaagtgaccccctcagcaactcctgatgaacagGACTGAAGCCAATATTAAAGCAAGTCAACCAAAGGTTCTCTGGTGTAGACAAGACAGCAAAAGGACAGACTACCTTGTGGAACCTAGCATTGTTCTCCTTCTGCAGCACTAAGTAACATTTGTTCTCCGTTAAGATCTTTGCAAACCACACACAAGAATTGCTGGTCATCCTGCCAATAGATGCTGCTCACAGAACCAAATTTCCTGTGCTGAATTGTCACTCATGGGCTTGAGAGTAGGAGACTGGAGACCAAGGTGGCTAGAATCCAGTTGGGCCTGATGTCTCCCTGTTGAAAGGGCTCCTTGTGGAATGAATAGCACATGGCTCCTGTGGTGGATCTGATAGTGGCATAGCACCAAGTGATGCAGGCCTGCCAGGGGCCACAGACACAGAAGATGCTCCCGGGGTCCCCCATGTACTCCAGACACACTGCAGGCCACCTCTCCCAGCAGGTTGCCAGTCATGGGCCCCATCATCATGACTTCTGTCCAAGGTGTGCTCGGAAATCTCTTCCTTAACTGTGACTTTCTGACAGGTGGAGGATGTGGTCAGGAGTGGGAAAAGGATTCGAGACGGGAAGAGGGAGGGGTTCAGGATGAAGAGAGATAATCTGTGCCACAGATGCTGGCCCTGCAGTTAGCTCCCACCTAGTCCGTGCACACACATTCTAATCCCCTCCCATTCCTTTACATGCTGCGGCCAGAGAGGCCTTTCTCAAAGTGGAAGTCTCATCCTCACTTCTCTGGTTACAGTGCTGGGCCATGGTAACTTACAAGGCTTAGCAGGAACTGTCTGCGCACTCCCCCTTCCTGCCCACTACCTTGTTTCCCTCCAGTTGCGAGAGAAaacattgattgagcattaactatgtgccaggcttgtcctaagtcctttgcatgtattcactcaaacaatcctcacaacattcctatcacatctcccatttcacagtgagggttctaaagcacgtagtgggtgaggaacttgtccagggtcacacaactaagtgggggtggagaaacatcaaatctaggtggtccaggtggtggccagaacccatCAGCACCTCACTACAGCTGCCTCCAGTTTCTCGCTCTAGGAAATActcttccctgtcaactcctgttgtcctctgggctcagttgacatgtcatctccttgaggaggacatcctgagatgctccccgactagggtgggcacccacttccacactccAAAtgcctatttgacctgtgtatcgctgcatccccactgcctggcagatagcaggcccc</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG043405]]
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[[Category:Intergenic]][[Category:NONHSAG043405]][[Category:Transcripts]]

Revision as of 10:22, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT108630

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1415 nt

Genomic location

chr6-:30261466..30264047

Exon number

2

Exons

30261466..30262741,30263909..30264047

Genome context

Sequence
000001 tgggaattta actgctggtt tatgttcttc cagagctccc tctttgccca ctagcagggc attagctggt gctgaagaca 000080
000081 gtggctgctt ggcgagcctg gatctccaag tgaccccctc agcaactcct gatgaacagG ACTGAAGCCA ATATTAAAGC 000160
000161 AAGTCAACCA AAGGTTCTCT GGTGTAGACA AGACAGCAAA AGGACAGACT ACCTTGTGGA ACCTAGCATT GTTCTCCTTC 000240
000241 TGCAGCACTA AGTAACATTT GTTCTCCGTT AAGATCTTTG CAAACCACAC ACAAGAATTG CTGGTCATCC TGCCAATAGA 000320
000321 TGCTGCTCAC AGAACCAAAT TTCCTGTGCT GAATTGTCAC TCATGGGCTT GAGAGTAGGA GACTGGAGAC CAAGGTGGCT 000400
000401 AGAATCCAGT TGGGCCTGAT GTCTCCCTGT TGAAAGGGCT CCTTGTGGAA TGAATAGCAC ATGGCTCCTG TGGTGGATCT 000480
000481 GATAGTGGCA TAGCACCAAG TGATGCAGGC CTGCCAGGGG CCACAGACAC AGAAGATGCT CCCGGGGTCC CCCATGTACT 000560
000561 CCAGACACAC TGCAGGCCAC CTCTCCCAGC AGGTTGCCAG TCATGGGCCC CATCATCATG ACTTCTGTCC AAGGTGTGCT 000640
000641 CGGAAATCTC TTCCTTAACT GTGACTTTCT GACAGGTGGA GGATGTGGTC AGGAGTGGGA AAAGGATTCG AGACGGGAAG 000720
000721 AGGGAGGGGT TCAGGATGAA GAGAGATAAT CTGTGCCACA GATGCTGGCC CTGCAGTTAG CTCCCACCTA GTCCGTGCAC 000800
000801 ACACATTCTA ATCCCCTCCC ATTCCTTTAC ATGCTGCGGC CAGAGAGGCC TTTCTCAAAG TGGAAGTCTC ATCCTCACTT 000880
000881 CTCTGGTTAC AGTGCTGGGC CATGGTAACT TACAAGGCTT AGCAGGAACT GTCTGCGCAC TCCCCCTTCC TGCCCACTAC 000960
000961 CTTGTTTCCC TCCAGTTGCG AGAGAAaaca ttgattgagc attaactatg tgccaggctt gtcctaagtc ctttgcatgt 001040
001041 attcactcaa acaatcctca caacattcct atcacatctc ccatttcaca gtgagggttc taaagcacgt agtgggtgag 001120
001121 gaacttgtcc agggtcacac aactaagtgg gggtggagaa acatcaaatc taggtggtcc aggtggtggc cagaacccat 001200
001201 CAGCACCTCA CTACAGCTGC CTCCAGTTTC TCGCTCTAGG AAATActctt ccctgtcaac tcctgttgtc ctctgggctc 001280
001281 agttgacatg tcatctcctt gaggaggaca tcctgagatg ctccccgact agggtgggca cccacttcca cactccAAAt 001360
001361 gcctatttga cctgtgtatc gctgcatccc cactgcctgg cagatagcag gcccc
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Predicted Small Protein

Name NONHSAT108630_smProtein_602:748
Length 49
Molecular weight 5259.7969
Aromaticity 0.0625
Instability index 53.64375
Isoelectric point 4.25079345703
Runs 10
Runs residual 0.0427631578947
Runs probability 0.0350998056881
Amino acid sequence MGPIIMTSVQGVLGNLFLNCDFLTGGGCGQEWEKDSRREEGGVQDEER
Secondary structure LLLEEEEELLLHHHEEEELLLEELLLLLLLEEEELLLLLLLLLLLLLL
PRMN -
PiMo -