Difference between revisions of "NONHSAT089584"

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sequence = <dnaseq>ggagaatcacttgaacctgggaggcggaggttgtggtgagccaaggggaaacaagagtgaaactccatctcaaaaaaaaaaaaaataataataataataataataataataataataaATACATACATAAATATATAAATGAATAAATGTTGGACTGAATTTGTCATGGACAACTCATCTTTTCCCTAACCAATCTCCTGGATTGAAGGGATTGAAGATTCAGAAGATACTCCTTTCCCCAAAGCCTTGGGAAATTCATTGCTGAGGGGTGCATCTTTAAAAAGTTTTAgttttagtttgctatggctaccatgacaaagtcccacaaattgagtgtctaaaacaacagaaaatgtattgtttcacagttccaggggttagaagtctgagatcagggtgttcgcaggccaatgttctctctgaagacactaggttatattagattaggggccatcctactgcagtctaactttgtcttaacttattacatctgcaatgaccttatttccacataaggtcacattctgaagtactaggggttagaacttcaacatataaattggtggggggTGCATAGTAAGCACCATGGTCACTCTTCTCCATAGGTTAGGGGTTCTAGACTCTTCTCCATAGGTTAGGGGTTCTAGACTCTTCTCCATAGGTTAGGGATTCTAGTGGGAGACACTAGAGTTGAAATGGCTCCTTGATTGCttttttttttttgaggcggagtctcactctgtcacccaggctggagtgcaatggcgcgatcttggctcaccgcaacctccacctcccgggttcaagcaattctcctgcctcagcctccaccagtagctaggattataggcatgcaccaccaggcccagataatttttttgtatttttagtagagacagggtttcaccgtgttggctaggctggtctcaaactcctgacctcaaatgatccacccacctcagcctcccaaagtgctgagattacaggcgtgagccaccgcaccaagccAGCTCCTTGATTTCAATGCAGATACAAGGAGTCTGGGGTGACAAGGGTCAAGCAGCAGTGTTGAGCTGCCAGAGGAGAGAGAGGAGCACAGACTGGGAATGCAGGATTTACAGGTTATCTGAATGGTCAGACCTGGAGGGATCTTTAGCAACCTGCAGGAATCTTTAGCAATAGGGACCCGATCACCAGACCCCTAGTACCAAAATAGATGGAGAGGCCAGTAGAGTCCCACCTATATAACAAGAGAGTGTGAGGTCCAACTGACAGAGACTCTACTGCaacagagaggaaaccctcaccaattttctagataaaaatcagtttgcaaactcaggggcccctgaacgaggtggggcatgcacccttaaggagggccctgtaaaaacagcacagattcatcctggcattttcctcacaatctccccaaagagacctgtggccACAAGCCAGGTGTGGCAGATATACTTGTGGTCTACCACAAAGCCAtttttcacttttctgttttttgagacagagtctcgctctgtcactcatgctggagtgcagtggcaaaatcatagctcactgcagcctcaacttactgggctcaagcggtcctccccccctcagactcctgagtagctgggattacaggcacgcaccaccatgcccagctaagtttttgatctttttgtagagacaaggtctcattatgctgcccaggctaatctcaaaTGATTACAGCCATGAGCCGCTGTACCCCACCTCATTTTTCACTTTTAATAAAATAGTTTTGCCAATAcagtggtacgtgcttgtaatcccagctactcaggaggctgaggcaggaggatcgcttggtcatgagttcataaccagccagagctacagagcaagatcctgtttttgtttttgcctttgagagagggtcttattttgtcgcccaggttgcagtggcctgaccccggctcactgcaacctccaacttctgggctcaagtattctcttgtctcagcctcccaagtagctaggactgtagacacgtgccaccacacttagtcatttgaaaattttttttgtagagatagggtctcattatgctccccaggctggtctcaaactcctgggctcacacaactctcccacctcggcctcttaaagcactgggattacaggtgtgaactactgtgttcggtgcaagaccccgtttttacaaaaataagataaaaTAGTTTCGTTTAAACAATAATGTACCCAGTAATGATCAGTCTAAACCAAATATGGCAACACTCTTCTCTGCAAGTAAGAAGtattatatatatatttttagatataaatCCAATATTGCTGAAACCTACCTATGTCTTTGCAACAATATTTGATTCTATCCAAATATTATCTGATCCTTTCAAGCTCATTCTTATTGGTGTAAGAAAAAATGAAAATAgccaggtgcagtggctcacgcctgtaatcacagcactttgggcggccaaggcgggcagatcacctgaggtcaggagttctagacaagcctgaacaacatgaa</dnaseq>|
 
sequence = <dnaseq>ggagaatcacttgaacctgggaggcggaggttgtggtgagccaaggggaaacaagagtgaaactccatctcaaaaaaaaaaaaaataataataataataataataataataataataaATACATACATAAATATATAAATGAATAAATGTTGGACTGAATTTGTCATGGACAACTCATCTTTTCCCTAACCAATCTCCTGGATTGAAGGGATTGAAGATTCAGAAGATACTCCTTTCCCCAAAGCCTTGGGAAATTCATTGCTGAGGGGTGCATCTTTAAAAAGTTTTAgttttagtttgctatggctaccatgacaaagtcccacaaattgagtgtctaaaacaacagaaaatgtattgtttcacagttccaggggttagaagtctgagatcagggtgttcgcaggccaatgttctctctgaagacactaggttatattagattaggggccatcctactgcagtctaactttgtcttaacttattacatctgcaatgaccttatttccacataaggtcacattctgaagtactaggggttagaacttcaacatataaattggtggggggTGCATAGTAAGCACCATGGTCACTCTTCTCCATAGGTTAGGGGTTCTAGACTCTTCTCCATAGGTTAGGGGTTCTAGACTCTTCTCCATAGGTTAGGGATTCTAGTGGGAGACACTAGAGTTGAAATGGCTCCTTGATTGCttttttttttttgaggcggagtctcactctgtcacccaggctggagtgcaatggcgcgatcttggctcaccgcaacctccacctcccgggttcaagcaattctcctgcctcagcctccaccagtagctaggattataggcatgcaccaccaggcccagataatttttttgtatttttagtagagacagggtttcaccgtgttggctaggctggtctcaaactcctgacctcaaatgatccacccacctcagcctcccaaagtgctgagattacaggcgtgagccaccgcaccaagccAGCTCCTTGATTTCAATGCAGATACAAGGAGTCTGGGGTGACAAGGGTCAAGCAGCAGTGTTGAGCTGCCAGAGGAGAGAGAGGAGCACAGACTGGGAATGCAGGATTTACAGGTTATCTGAATGGTCAGACCTGGAGGGATCTTTAGCAACCTGCAGGAATCTTTAGCAATAGGGACCCGATCACCAGACCCCTAGTACCAAAATAGATGGAGAGGCCAGTAGAGTCCCACCTATATAACAAGAGAGTGTGAGGTCCAACTGACAGAGACTCTACTGCaacagagaggaaaccctcaccaattttctagataaaaatcagtttgcaaactcaggggcccctgaacgaggtggggcatgcacccttaaggagggccctgtaaaaacagcacagattcatcctggcattttcctcacaatctccccaaagagacctgtggccACAAGCCAGGTGTGGCAGATATACTTGTGGTCTACCACAAAGCCAtttttcacttttctgttttttgagacagagtctcgctctgtcactcatgctggagtgcagtggcaaaatcatagctcactgcagcctcaacttactgggctcaagcggtcctccccccctcagactcctgagtagctgggattacaggcacgcaccaccatgcccagctaagtttttgatctttttgtagagacaaggtctcattatgctgcccaggctaatctcaaaTGATTACAGCCATGAGCCGCTGTACCCCACCTCATTTTTCACTTTTAATAAAATAGTTTTGCCAATAcagtggtacgtgcttgtaatcccagctactcaggaggctgaggcaggaggatcgcttggtcatgagttcataaccagccagagctacagagcaagatcctgtttttgtttttgcctttgagagagggtcttattttgtcgcccaggttgcagtggcctgaccccggctcactgcaacctccaacttctgggctcaagtattctcttgtctcagcctcccaagtagctaggactgtagacacgtgccaccacacttagtcatttgaaaattttttttgtagagatagggtctcattatgctccccaggctggtctcaaactcctgggctcacacaactctcccacctcggcctcttaaagcactgggattacaggtgtgaactactgtgttcggtgcaagaccccgtttttacaaaaataagataaaaTAGTTTCGTTTAAACAATAATGTACCCAGTAATGATCAGTCTAAACCAAATATGGCAACACTCTTCTCTGCAAGTAAGAAGtattatatatatatttttagatataaatCCAATATTGCTGAAACCTACCTATGTCTTTGCAACAATATTTGATTCTATCCAAATATTATCTGATCCTTTCAAGCTCATTCTTATTGGTGTAAGAAAAAATGAAAATAgccaggtgcagtggctcacgcctgtaatcacagcactttgggcggccaaggcgggcagatcacctgaggtcaggagttctagacaagcctgaacaacatgaa</dnaseq>|
 
}}
 
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[[Category:Intergenic]][[Category:NONHSAG035030]]
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[[Category:Intergenic]][[Category:NONHSAG035030]][[Category:Transcripts]]

Latest revision as of 00:31, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089584

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2536 nt

Genomic location

chr3+:48550989..48553524

Exon number

1

Exons

48550989..48553524

Genome context

Sequence
000001 ggagaatcac ttgaacctgg gaggcggagg ttgtggtgag ccaaggggaa acaagagtga aactccatct caaaaaaaaa 000080
000081 aaaaataata ataataataa taataataat aataataaAT ACATACATAA ATATATAAAT GAATAAATGT TGGACTGAAT 000160
000161 TTGTCATGGA CAACTCATCT TTTCCCTAAC CAATCTCCTG GATTGAAGGG ATTGAAGATT CAGAAGATAC TCCTTTCCCC 000240
000241 AAAGCCTTGG GAAATTCATT GCTGAGGGGT GCATCTTTAA AAAGTTTTAg ttttagtttg ctatggctac catgacaaag 000320
000321 tcccacaaat tgagtgtcta aaacaacaga aaatgtattg tttcacagtt ccaggggtta gaagtctgag atcagggtgt 000400
000401 tcgcaggcca atgttctctc tgaagacact aggttatatt agattagggg ccatcctact gcagtctaac tttgtcttaa 000480
000481 cttattacat ctgcaatgac cttatttcca cataaggtca cattctgaag tactaggggt tagaacttca acatataaat 000560
000561 tggtgggggg TGCATAGTAA GCACCATGGT CACTCTTCTC CATAGGTTAG GGGTTCTAGA CTCTTCTCCA TAGGTTAGGG 000640
000641 GTTCTAGACT CTTCTCCATA GGTTAGGGAT TCTAGTGGGA GACACTAGAG TTGAAATGGC TCCTTGATTG Cttttttttt 000720
000721 tttgaggcgg agtctcactc tgtcacccag gctggagtgc aatggcgcga tcttggctca ccgcaacctc cacctcccgg 000800
000801 gttcaagcaa ttctcctgcc tcagcctcca ccagtagcta ggattatagg catgcaccac caggcccaga taattttttt 000880
000881 gtatttttag tagagacagg gtttcaccgt gttggctagg ctggtctcaa actcctgacc tcaaatgatc cacccacctc 000960
000961 agcctcccaa agtgctgaga ttacaggcgt gagccaccgc accaagccAG CTCCTTGATT TCAATGCAGA TACAAGGAGT 001040
001041 CTGGGGTGAC AAGGGTCAAG CAGCAGTGTT GAGCTGCCAG AGGAGAGAGA GGAGCACAGA CTGGGAATGC AGGATTTACA 001120
001121 GGTTATCTGA ATGGTCAGAC CTGGAGGGAT CTTTAGCAAC CTGCAGGAAT CTTTAGCAAT AGGGACCCGA TCACCAGACC 001200
001201 CCTAGTACCA AAATAGATGG AGAGGCCAGT AGAGTCCCAC CTATATAACA AGAGAGTGTG AGGTCCAACT GACAGAGACT 001280
001281 CTACTGCaac agagaggaaa ccctcaccaa ttttctagat aaaaatcagt ttgcaaactc aggggcccct gaacgaggtg 001360
001361 gggcatgcac ccttaaggag ggccctgtaa aaacagcaca gattcatcct ggcattttcc tcacaatctc cccaaagaga 001440
001441 cctgtggccA CAAGCCAGGT GTGGCAGATA TACTTGTGGT CTACCACAAA GCCAtttttc acttttctgt tttttgagac 001520
001521 agagtctcgc tctgtcactc atgctggagt gcagtggcaa aatcatagct cactgcagcc tcaacttact gggctcaagc 001600
001601 ggtcctcccc ccctcagact cctgagtagc tgggattaca ggcacgcacc accatgccca gctaagtttt tgatcttttt 001680
001681 gtagagacaa ggtctcatta tgctgcccag gctaatctca aaTGATTACA GCCATGAGCC GCTGTACCCC ACCTCATTTT 001760
001761 TCACTTTTAA TAAAATAGTT TTGCCAATAc agtggtacgt gcttgtaatc ccagctactc aggaggctga ggcaggagga 001840
001841 tcgcttggtc atgagttcat aaccagccag agctacagag caagatcctg tttttgtttt tgcctttgag agagggtctt 001920
001921 attttgtcgc ccaggttgca gtggcctgac cccggctcac tgcaacctcc aacttctggg ctcaagtatt ctcttgtctc 002000
002001 agcctcccaa gtagctagga ctgtagacac gtgccaccac acttagtcat ttgaaaattt tttttgtaga gatagggtct 002080
002081 cattatgctc cccaggctgg tctcaaactc ctgggctcac acaactctcc cacctcggcc tcttaaagca ctgggattac 002160
002161 aggtgtgaac tactgtgttc ggtgcaagac cccgttttta caaaaataag ataaaaTAGT TTCGTTTAAA CAATAATGTA 002240
002241 CCCAGTAATG ATCAGTCTAA ACCAAATATG GCAACACTCT TCTCTGCAAG TAAGAAGtat tatatatata tttttagata 002320
002321 taaatCCAAT ATTGCTGAAA CCTACCTATG TCTTTGCAAC AATATTTGAT TCTATCCAAA TATTATCTGA TCCTTTCAAG 002400
002401 CTCATTCTTA TTGGTGTAAG AAAAAATGAA AATAgccagg tgcagtggct cacgcctgta atcacagcac tttgggcggc 002480
002481 caaggcgggc agatcacctg aggtcaggag ttctagacaa gcctgaacaa catgaa
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Predicted Small Protein

Name NONHSAT089584_smProtein_761:889
Length 43
Molecular weight 4761.6161
Aromaticity 0.0952380952381
Instability index 76.4238095238
Isoelectric point 11.7113647461
Runs 9
Runs residual 0.038125376733
Runs probability 0.0500107951089
Amino acid sequence MARSWLTATSTSRVQAILLPQPPPVARIIGMHHQAQIIFLYF
Secondary structure LLLLLLLLLLLLHHHHHLLLLLLHHHHHHLHHHHHHHLLEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
PiMo i?????????????????????????????????????????