Difference between revisions of "NONHSAT089642"

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sequence = <dnaseq>GGCGCGCTGGGAAGGCTCGTTCTCGCGAGAGTTCAGCTCCCTTCTTAGCCGTGGCTGCCTCAGCACCTCGAGGATCGACATGGACGCTCTCGAGGACTACGTTTGGCCGCGGGCAACCTCGGAGCTTATACTCCTCCCAGTGACGGGTCTGGAGTGCGTGGGGGACCGGCTGTTGGCGGgctggagtgcagtggcacggtctcggctccctgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctccggagtagctgggattacagAGTCTGgctttggctttccaaagtgcccagattacaggcgtgagccaccgcacccggccGAGACCAAGGATTTTCTAAGATTCAAGCTGCAGGATTGTGTGTCCTGATGCATTCATAGGCTACATGCCGAGAAGTTTCCCTGATCCCCATCTCTTCCCTGTGGGTCATCAGAGTTAGGTACCTAGCTCTGACATGGCTCTTTGCCTCTATCTAGGTGAGGGTCCCGATGTCCTGGTGTACAGCTTGGACTTTGGTGGGCATCTGCGGATGATAAAGCGAGTGCAGA</dnaseq>|
 
sequence = <dnaseq>GGCGCGCTGGGAAGGCTCGTTCTCGCGAGAGTTCAGCTCCCTTCTTAGCCGTGGCTGCCTCAGCACCTCGAGGATCGACATGGACGCTCTCGAGGACTACGTTTGGCCGCGGGCAACCTCGGAGCTTATACTCCTCCCAGTGACGGGTCTGGAGTGCGTGGGGGACCGGCTGTTGGCGGgctggagtgcagtggcacggtctcggctccctgcaacctccgcctcccaggttcaagtgattctcctgcctcagcctccggagtagctgggattacagAGTCTGgctttggctttccaaagtgcccagattacaggcgtgagccaccgcacccggccGAGACCAAGGATTTTCTAAGATTCAAGCTGCAGGATTGTGTGTCCTGATGCATTCATAGGCTACATGCCGAGAAGTTTCCCTGATCCCCATCTCTTCCCTGTGGGTCATCAGAGTTAGGTACCTAGCTCTGACATGGCTCTTTGCCTCTATCTAGGTGAGGGTCCCGATGTCCTGGTGTACAGCTTGGACTTTGGTGGGCATCTGCGGATGATAAAGCGAGTGCAGA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG035050]]
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[[Category:Sense]][[Category:NONHSAG035050]][[Category:Transcripts]]

Latest revision as of 00:31, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT089642

Source

NONCODE4.0

Same with

,

Classification

sense

Length

563 nt

Genomic location

chr3+:49044786..49049139

Exon number

3

Exons

49044786..49044964,49046360..49046457,49048854..49049139

Genome context

Sequence
000001 GGCGCGCTGG GAAGGCTCGT TCTCGCGAGA GTTCAGCTCC CTTCTTAGCC GTGGCTGCCT CAGCACCTCG AGGATCGACA 000080
000081 TGGACGCTCT CGAGGACTAC GTTTGGCCGC GGGCAACCTC GGAGCTTATA CTCCTCCCAG TGACGGGTCT GGAGTGCGTG 000160
000161 GGGGACCGGC TGTTGGCGGg ctggagtgca gtggcacggt ctcggctccc tgcaacctcc gcctcccagg ttcaagtgat 000240
000241 tctcctgcct cagcctccgg agtagctggg attacagAGT CTGgctttgg ctttccaaag tgcccagatt acaggcgtga 000320
000321 gccaccgcac ccggccGAGA CCAAGGATTT TCTAAGATTC AAGCTGCAGG ATTGTGTGTC CTGATGCATT CATAGGCTAC 000400
000401 ATGCCGAGAA GTTTCCCTGA TCCCCATCTC TTCCCTGTGG GTCATCAGAG TTAGGTACCT AGCTCTGACA TGGCTCTTTG 000480
000481 CCTCTATCTA GGTGAGGGTC CCGATGTCCT GGTGTACAGC TTGGACTTTG GTGGGCATCT GCGGATGATA AAGCGAGTGC 000560
000561 AGA
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Predicted Small Protein

Name NONHSAT089642_smProtein_503:547
Length 15
Molecular weight 1527.8287
Aromaticity 0.142857142857
Instability index 41.0928571429
Isoelectric point 5.27056884766
Runs 5
Runs residual 1.66533453694e-16
Runs probability 0.00346228581522
Amino acid sequence MSWCTAWTLVGICG
Secondary structure LLEELLLHHHLLLL
PRMN -
PiMo -