Difference between revisions of "Lnc-CD80-1:1"
| Line 42: | Line 42: | ||
sequence = <dnaseq>AAGATGGAGTCTCACTCTGCTGCCCAGGCTGCAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCTATTCTCCCCCACCTCAGTCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACAACTATTTTTTTTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACCCGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCAGGCCACATGAATTTTTTTCAATAAATATATTGAAAAATGTTTTGGAAATGTGCAATAATTTGAAAAAACTCGCAGATAAACTGTCTAGCCTAGAAATATCAAAAAAAATTAAGAAAAATGTATGTCTTTAAGTGCATAAAATATATGTAGACACCAATCTATTTATGTGTGAAGCAACTGTTTATGTTATTGGTAAGGCCTCTGGATAACAGCAGGCCATTAGTAGTTAAGTTTTGGGGGAGTCAAAAGTTATATGTGGATTTTTCAACTGCACAGGGCAGATGTCAGCATTGCTATTGTGTTCAAAGCTGTTTTCAGTGTTGTCCAAAGGTCAACTTGTATATGTACACATTTATATATCTTCCTACTCAGAAATCAGAGACACATTTACTTCTATATTTTCCCCAATCTTTTATGGATTTTTTTACATAAGCACCATAATAAATGTTAACTAATTTTGTTGTACTGAATATAGTTATAATTTCTTTCCAAATAGTTAATAACTGTTCCAGCCCAAGAATGGTCTATTCTTAAACCACGAATGTGAAGTATCACCTTTACTTATTTGTGGGTGCTTGGTTTTGTTCCTGACCTTGCAATTCCATTCCACAGATCTACCAATACCTCTTTATTGTCCTCTTTATTGTAACTTTATACAGATTTTAATTTTACAGTTGCAAGAACCCCTCATTATTTTTTGCTGAAATGTCTTTGCTATGCTCTTAATAATCAGCATTTTAGATATGATTTAGACATTGTATCAAGTTTTTTTAAAAAAGCCTGTAATTTTGATTTGAATTGCTTTCAATTTATAAATGAAGTAGAAAAATACTGGGTTAACTATCAACTGTTTCCCCATTTTTATTATTTATGATTTGTAATTTTCTTCAGAGAAGTTGTACATTTATTAAATTTATTCCTTATTATATTACATTCTTAGTACTATTATTAAGAAAATTTTTTACTTTTCAAGTAACTGCTGAAATATAAAAAGGCTATTTATATATTTACACTTTACTGATAGCAATAATTTTTCAAGTCATCTTTTAAAATATTACCTACAAATACAGAAAATTTTGCTTCCTCCTATCTAAAAGCACTGCCTTTTTCCCCTTCTGTGTTAATATATTTTTAACAGTTTTATTGAGGTATAATTTACATAACACAAAATTCACCTAAATGTACAATTCAATAATTTTTAGTAAAAAAATCTAGTGGCCCGGCACGGTGGTTCATGCCTGAAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTGCTAAAAATACAAAAATTAGCCGGGTATGGTGGCATATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGAAGGTGGAGGTTGCAGCGAGCCGAGATCGCACCACTGCACTCCAGGTTCACGCCATTTTCCTGCCTCAGCCTCCCAAGTAGCCGGGATTACAGATGTGCACCACCATGCCCAGCTAATTTTCGTATTTTTAGTGGAGGCGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCAACCTCAAGAGATCTGCCTGCCTCAGCCTCCCAAATCGCTGGGATTACAGGCATAAGCCACCACACCTGGCCTTCCAATGGTTTTCTTAATTCATTTGGATTTTCTACTTGCAAGATGTTGTGGTTACCCTCCAGAGACAATAAACTCCCCCACCCAAAATTTGAATCAGATATTGAAATGCCAAAGTACCAAGAGGTACTAAGAGGATACCAAAAGGTTTATTACACATATAATAAGGCTTTCCAGGGAGAGCAAGGCAAGATCCCAAGCATGTCCCAAAATGACTTGAGAACCTGAAGGCTGACTGACTGGCTTGTGGTTTTAGAAGGTGGGGCTAGAGCAAGAGCTCCCTCATGTAGGCCTGAGCTTGCATGGTTGAAACTTCCTGCTGGTGTCAACCAAGGTAGCACTTGGGCTTTCTTATCAGCTTGTCAAGATGTGGGGCAAAAAGGAAAGGGAGACTTCCAGTTTCTGGTATGGCATGTGAGAAGTTTAGAGTTTATCACTTATTCCTAACAACAAGTAAAAAGCTAAACAAATGGAAAAACTGACAACTCTTCTTAGATCCACCAAAGAAGTGAGATCATGGGTAAACTGCTGCCCTCAAAATAGGAGAGACAGACAGATAAATACAGAGAATCACACCTTATTAGAGCAGAAACCCACGAGCAGAAGCCTCCATGGAAACCAGTACCAGAGTAGGAAACCTTGACTATAAATGATAAATTGCTGGAAGTTCAGTGTAGAAAAGTCTAAGACCTAAAAACTGTAGGGGAGCCAATCATAGAGGGTCCCCACACTCCAGGAGCTCTACCAAGTTCTCCCAGTAAAGATCTGAGAAAAATCCCCTCAGGCTTCTGGCAAGGGGGAAGAAAAGTAACCATTTTGAAATATGCCAGAACATTCCGTT</dnaseq>| | sequence = <dnaseq>AAGATGGAGTCTCACTCTGCTGCCCAGGCTGCAGTGCAATGGCATGATCTTGGCTCACTGCAACCTCTGCCTCCCGGGTTCAAGCTATTCTCCCCCACCTCAGTCTCCCAAGTAGCTGGGACTACAGGTGCATGCCACCACAACTATTTTTTTTATTTTTTAGTAGAGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGATCTCAAGTGATCCACCCGCCTCAGCTTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCATGCCAGGCCACATGAATTTTTTTCAATAAATATATTGAAAAATGTTTTGGAAATGTGCAATAATTTGAAAAAACTCGCAGATAAACTGTCTAGCCTAGAAATATCAAAAAAAATTAAGAAAAATGTATGTCTTTAAGTGCATAAAATATATGTAGACACCAATCTATTTATGTGTGAAGCAACTGTTTATGTTATTGGTAAGGCCTCTGGATAACAGCAGGCCATTAGTAGTTAAGTTTTGGGGGAGTCAAAAGTTATATGTGGATTTTTCAACTGCACAGGGCAGATGTCAGCATTGCTATTGTGTTCAAAGCTGTTTTCAGTGTTGTCCAAAGGTCAACTTGTATATGTACACATTTATATATCTTCCTACTCAGAAATCAGAGACACATTTACTTCTATATTTTCCCCAATCTTTTATGGATTTTTTTACATAAGCACCATAATAAATGTTAACTAATTTTGTTGTACTGAATATAGTTATAATTTCTTTCCAAATAGTTAATAACTGTTCCAGCCCAAGAATGGTCTATTCTTAAACCACGAATGTGAAGTATCACCTTTACTTATTTGTGGGTGCTTGGTTTTGTTCCTGACCTTGCAATTCCATTCCACAGATCTACCAATACCTCTTTATTGTCCTCTTTATTGTAACTTTATACAGATTTTAATTTTACAGTTGCAAGAACCCCTCATTATTTTTTGCTGAAATGTCTTTGCTATGCTCTTAATAATCAGCATTTTAGATATGATTTAGACATTGTATCAAGTTTTTTTAAAAAAGCCTGTAATTTTGATTTGAATTGCTTTCAATTTATAAATGAAGTAGAAAAATACTGGGTTAACTATCAACTGTTTCCCCATTTTTATTATTTATGATTTGTAATTTTCTTCAGAGAAGTTGTACATTTATTAAATTTATTCCTTATTATATTACATTCTTAGTACTATTATTAAGAAAATTTTTTACTTTTCAAGTAACTGCTGAAATATAAAAAGGCTATTTATATATTTACACTTTACTGATAGCAATAATTTTTCAAGTCATCTTTTAAAATATTACCTACAAATACAGAAAATTTTGCTTCCTCCTATCTAAAAGCACTGCCTTTTTCCCCTTCTGTGTTAATATATTTTTAACAGTTTTATTGAGGTATAATTTACATAACACAAAATTCACCTAAATGTACAATTCAATAATTTTTAGTAAAAAAATCTAGTGGCCCGGCACGGTGGTTCATGCCTGAAATCCCAGCACTTTGGGAGGCCGAGGCGGGCGGATCACGAGGTCAGGAGATTGAGACCATCCTGGCTAACATGGTGAAACCCTGTCTCTGCTAAAAATACAAAAATTAGCCGGGTATGGTGGCATATGCCTGTAGTCCCAGCTACTCAGGAGGCTGAGGCAGGAGAATCCCTTGAACCCGGAAGGTGGAGGTTGCAGCGAGCCGAGATCGCACCACTGCACTCCAGGTTCACGCCATTTTCCTGCCTCAGCCTCCCAAGTAGCCGGGATTACAGATGTGCACCACCATGCCCAGCTAATTTTCGTATTTTTAGTGGAGGCGAGGTTTCACCATGTTGGCCAGGCTGGTCTCAAACTCCCAACCTCAAGAGATCTGCCTGCCTCAGCCTCCCAAATCGCTGGGATTACAGGCATAAGCCACCACACCTGGCCTTCCAATGGTTTTCTTAATTCATTTGGATTTTCTACTTGCAAGATGTTGTGGTTACCCTCCAGAGACAATAAACTCCCCCACCCAAAATTTGAATCAGATATTGAAATGCCAAAGTACCAAGAGGTACTAAGAGGATACCAAAAGGTTTATTACACATATAATAAGGCTTTCCAGGGAGAGCAAGGCAAGATCCCAAGCATGTCCCAAAATGACTTGAGAACCTGAAGGCTGACTGACTGGCTTGTGGTTTTAGAAGGTGGGGCTAGAGCAAGAGCTCCCTCATGTAGGCCTGAGCTTGCATGGTTGAAACTTCCTGCTGGTGTCAACCAAGGTAGCACTTGGGCTTTCTTATCAGCTTGTCAAGATGTGGGGCAAAAAGGAAAGGGAGACTTCCAGTTTCTGGTATGGCATGTGAGAAGTTTAGAGTTTATCACTTATTCCTAACAACAAGTAAAAAGCTAAACAAATGGAAAAACTGACAACTCTTCTTAGATCCACCAAAGAAGTGAGATCATGGGTAAACTGCTGCCCTCAAAATAGGAGAGACAGACAGATAAATACAGAGAATCACACCTTATTAGAGCAGAAACCCACGAGCAGAAGCCTCCATGGAAACCAGTACCAGAGTAGGAAACCTTGACTATAAATGATAAATTGCTGGAAGTTCAGTGTAGAAAAGTCTAAGACCTAAAAACTGTAGGGGAGCCAATCATAGAGGGTCCCCACACTCCAGGAGCTCTACCAAGTTCTCCCAGTAAAGATCTGAGAAAAATCCCCTCAGGCTTCTGGCAAGGGGGAAGAAAAGTAACCATTTTGAAATATGCCAGAACATTCCGTT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:lnc-CD80-1]] | + | [[Category:Intronic(AS)]][[Category:lnc-CD80-1]][[Category:Transcripts]] |
Latest revision as of 03:54, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
lnc-CD80-1:1 |
| Source |
LNCipedia2.1 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
2789 nt |
| Genomic location |
chr3-:119226932..119230323 |
| Exon number |
2 |
| Exons |
119226932..119227975,119228579..119230323 |
| Genome context |
|
| Sequence |
000001 AAGATGGAGT CTCACTCTGC TGCCCAGGCT GCAGTGCAAT GGCATGATCT TGGCTCACTG CAACCTCTGC CTCCCGGGTT 000080
000081 CAAGCTATTC TCCCCCACCT CAGTCTCCCA AGTAGCTGGG ACTACAGGTG CATGCCACCA CAACTATTTT TTTTATTTTT 000160 000161 TAGTAGAGAC AGGGTTTCAC CATGTTGGCC AGGCTGGTCT CGAACTCCTG ATCTCAAGTG ATCCACCCGC CTCAGCTTCC 000240 000241 CAAAGTGCTG GGATTACAGG CATGAGCCAC CATGCCAGGC CACATGAATT TTTTTCAATA AATATATTGA AAAATGTTTT 000320 000321 GGAAATGTGC AATAATTTGA AAAAACTCGC AGATAAACTG TCTAGCCTAG AAATATCAAA AAAAATTAAG AAAAATGTAT 000400 000401 GTCTTTAAGT GCATAAAATA TATGTAGACA CCAATCTATT TATGTGTGAA GCAACTGTTT ATGTTATTGG TAAGGCCTCT 000480 000481 GGATAACAGC AGGCCATTAG TAGTTAAGTT TTGGGGGAGT CAAAAGTTAT ATGTGGATTT TTCAACTGCA CAGGGCAGAT 000560 000561 GTCAGCATTG CTATTGTGTT CAAAGCTGTT TTCAGTGTTG TCCAAAGGTC AACTTGTATA TGTACACATT TATATATCTT 000640 000641 CCTACTCAGA AATCAGAGAC ACATTTACTT CTATATTTTC CCCAATCTTT TATGGATTTT TTTACATAAG CACCATAATA 000720 000721 AATGTTAACT AATTTTGTTG TACTGAATAT AGTTATAATT TCTTTCCAAA TAGTTAATAA CTGTTCCAGC CCAAGAATGG 000800 000801 TCTATTCTTA AACCACGAAT GTGAAGTATC ACCTTTACTT ATTTGTGGGT GCTTGGTTTT GTTCCTGACC TTGCAATTCC 000880 000881 ATTCCACAGA TCTACCAATA CCTCTTTATT GTCCTCTTTA TTGTAACTTT ATACAGATTT TAATTTTACA GTTGCAAGAA 000960 000961 CCCCTCATTA TTTTTTGCTG AAATGTCTTT GCTATGCTCT TAATAATCAG CATTTTAGAT ATGATTTAGA CATTGTATCA 001040 001041 AGTTTTTTTA AAAAAGCCTG TAATTTTGAT TTGAATTGCT TTCAATTTAT AAATGAAGTA GAAAAATACT GGGTTAACTA 001120 001121 TCAACTGTTT CCCCATTTTT ATTATTTATG ATTTGTAATT TTCTTCAGAG AAGTTGTACA TTTATTAAAT TTATTCCTTA 001200 001201 TTATATTACA TTCTTAGTAC TATTATTAAG AAAATTTTTT ACTTTTCAAG TAACTGCTGA AATATAAAAA GGCTATTTAT 001280 001281 ATATTTACAC TTTACTGATA GCAATAATTT TTCAAGTCAT CTTTTAAAAT ATTACCTACA AATACAGAAA ATTTTGCTTC 001360 001361 CTCCTATCTA AAAGCACTGC CTTTTTCCCC TTCTGTGTTA ATATATTTTT AACAGTTTTA TTGAGGTATA ATTTACATAA 001440 001441 CACAAAATTC ACCTAAATGT ACAATTCAAT AATTTTTAGT AAAAAAATCT AGTGGCCCGG CACGGTGGTT CATGCCTGAA 001520 001521 ATCCCAGCAC TTTGGGAGGC CGAGGCGGGC GGATCACGAG GTCAGGAGAT TGAGACCATC CTGGCTAACA TGGTGAAACC 001600 001601 CTGTCTCTGC TAAAAATACA AAAATTAGCC GGGTATGGTG GCATATGCCT GTAGTCCCAG CTACTCAGGA GGCTGAGGCA 001680 001681 GGAGAATCCC TTGAACCCGG AAGGTGGAGG TTGCAGCGAG CCGAGATCGC ACCACTGCAC TCCAGGTTCA CGCCATTTTC 001760 001761 CTGCCTCAGC CTCCCAAGTA GCCGGGATTA CAGATGTGCA CCACCATGCC CAGCTAATTT TCGTATTTTT AGTGGAGGCG 001840 001841 AGGTTTCACC ATGTTGGCCA GGCTGGTCTC AAACTCCCAA CCTCAAGAGA TCTGCCTGCC TCAGCCTCCC AAATCGCTGG 001920 001921 GATTACAGGC ATAAGCCACC ACACCTGGCC TTCCAATGGT TTTCTTAATT CATTTGGATT TTCTACTTGC AAGATGTTGT 002000 002001 GGTTACCCTC CAGAGACAAT AAACTCCCCC ACCCAAAATT TGAATCAGAT ATTGAAATGC CAAAGTACCA AGAGGTACTA 002080 002081 AGAGGATACC AAAAGGTTTA TTACACATAT AATAAGGCTT TCCAGGGAGA GCAAGGCAAG ATCCCAAGCA TGTCCCAAAA 002160 002161 TGACTTGAGA ACCTGAAGGC TGACTGACTG GCTTGTGGTT TTAGAAGGTG GGGCTAGAGC AAGAGCTCCC TCATGTAGGC 002240 002241 CTGAGCTTGC ATGGTTGAAA CTTCCTGCTG GTGTCAACCA AGGTAGCACT TGGGCTTTCT TATCAGCTTG TCAAGATGTG 002320 002321 GGGCAAAAAG GAAAGGGAGA CTTCCAGTTT CTGGTATGGC ATGTGAGAAG TTTAGAGTTT ATCACTTATT CCTAACAACA 002400 002401 AGTAAAAAGC TAAACAAATG GAAAAACTGA CAACTCTTCT TAGATCCACC AAAGAAGTGA GATCATGGGT AAACTGCTGC 002480 002481 CCTCAAAATA GGAGAGACAG ACAGATAAAT ACAGAGAATC ACACCTTATT AGAGCAGAAA CCCACGAGCA GAAGCCTCCA 002560 002561 TGGAAACCAG TACCAGAGTA GGAAACCTTG ACTATAAATG ATAAATTGCT GGAAGTTCAG TGTAGAAAAG TCTAAGACCT 002640 002641 AAAAACTGTA GGGGAGCCAA TCATAGAGGG TCCCCACACT CCAGGAGCTC TACCAAGTTC TCCCAGTAAA GATCTGAGAA 002720 002721 AAATCCCCTC AGGCTTCTGG CAAGGGGGAA GAAAAGTAAC CATTTTGAAA TATGCCAGAA CATTCCGTT |
