Difference between revisions of "NONHSAT090034"

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sequence = <dnaseq>GAGAAGCTGAGCACCCATGCTGGAACTCACCATATAGATGCCTCACTGCTTTTCATTTCTAAGTTTCTCCTCCATGTCTTTTTCCTCTTGCCAGTGTTTAGATAAAATTATTTCTATTTGATACATTTTTCTTCACTCTTGTCCTTAATGGGTCAAGTCTCATGTGGCTTCATAGCCCTGACAGACAGTAGTATTGCTAttttggagtcaaggtctcgttctgtcggccaagctggagtgcagtggcaccatcagggctcactgcagccttgacctccgaggctcaaggaatcctcccacctcagcctcagccttccggatagttggtactacagATGATCCAGCTCTGTCGGAGGCACGTAGGCACAGCCAAATCTCATGCTGTACATTGATCACCTGTCCAACCTTTGCCTAGAGTGGGAGCCCCCAGTTCCTTCGAGATCCAACATTACCTGTCTGTAAAGAAGAAGAGGAGGAGGGAGACAGCGGGGAGGATCCGGTGGCAGTTTAACACCAGAGCAGGTCCAATGTTTACTTTTACCCTTTTGGAGCTATTAGAAGGGCTGAATAAAGGGAACATGCAGCTCTGCAGCAATATTCTGATAATGTATTGCAGTGCGGCTCACATCACTGTCCACCACCACCTGGAGCGGCTCATCAGAACTGAAGGGGAGTTTTCACTTACCTTATTGAGCGTGATTCTGTTCTACTTGATATTTCCTTCACCACCTCATGTCATTTCTCATGGATTTGGTTATGATGGAAAGGAAGAATGCAGAGGAGGAGAAAAGTGACAGATCCTCCATTTTTGTTGGGATGCGGGCATTTTGAATGTGATCATCTTTGCTGAATGTCATTATTTGATAACATTTTGTTTATGTTACTTAAACATCATTGGATAAATTTGAACTCCATGGGATTTTATCTGTGGATTCAGCTTCTGTTGGACAACTAGCCTCATCTCCAGTATCCTGCTGGTTCACTCTAATTGGTCATTCCTAATGCATTAGATTATCAAAAAGTATAAATTCGCTGTGAGTGAGTGGTGTTGGCAGTGTTTGTATACCATGATGCATGGAGTGTTTGACGAAGAAACAAAAAACACCAAAAATTGCGAGCCTTTACCCTCCTCTATTTCTTTAATCTGTTGTTTGAAGAACCGCATTTTGAGGGTGTAACCAGTAGTCACCTCTGGGCCAGGTTGGAAAAGAAATCAATTTTTTAAACCACTAATGCTTGCCAAGAAATCGCCTTATGAGAACATGGTGTGTGTCTCTGACAATGCGTGGCACATCTAAATTGATCATTCATAATTTTATCTACCCAGTCATGTACTGGAGAGTGGCAAAAGTCTGAGGCACCTGCATATCTCTAGTCCCTGTGTTCTGCACATCCCCACGGTGGGGACGCCACCAAGCCTCAGACTCTTACCATCCCGGTGCATGCAGGTCTCCATGAAGAAGCTGGGACTCATTCACATTTCAAGATCCAAATGCTGTGCAAACAGTGTAAGCTTAGATTTTCTGTAAATGAAGGGTCATTTCTCTTTTTTTTTTTTTTTAAAGAAAATGTGTCTGCAACATGGATTCCAAAGCATTTTCAGCATCAAACATGAAAACATTGATGAATGAGGAACAATCACAAAAGCTGTGTCTCTGTATATAGCTCTACACAACATGTATGTGGATACAGTCATTATTTAAAGCACATGCCAGGGAAAAAGACCAAATTTTGAGGTCTTTTACATACAGTGATATGGTACTAAGGAGAATTAAACTCCTACTGCTTCCTCTGAATATTAAGAAACAATTTAAATTGTTATAACTTCATAAAACTCATGACTGAGTCTGGCAAACATGTGCAACTCTTGTATTGCTCCATTTTCTTGTCAATGGAAGAAACCCTTCCACGTGTATGCAAGTGGGAGATGAAAACCTGCATTTTTAAAGGACAAACAGTGAATTTAAGCATGAGTGGCCTTAATAAATATAGTTGTCTTTCTTTGCTGCTGTGGAAAGGATTCTAAACAGATGTCCCTGAAGTCTTGCATTGAATTTAGTCATTATTATTACTTTTTAAAATGTTGGTGCAATTAACTCTGGACCTCTCTTGTGAGCCATAGAGATATTTAAAAGACAAACACCTTATTTGTCGGGGAAGATGAAACCGTCCCTGAGTTGCACCATTCTTTCTTGGTGCATTCGCGGTTAAGATACTCAAGCAGGTTTCTTGCTTCTGGCTTTGTTCTTGTCATCAGTAAGTATAACAAACTATGTAATGCTTATGTGTTGCATAAACAATCCAAATGCATTCATGTTTTAAAAGTTTGTCCTTTAACTATCAGAGGGATCTAGGTCTTGGTTAGAGAAGTAAGCAGAGTTCTTTGCAAGCTTATTTAGCACATTTTGACACAATGTTGCACTGAAAACCCAGGCCACAAATGTGTCCCAGTGAACAGTTTGGATGTCCTCAAAGAAGTGGTTCTCACTGCCTCCTACAACCAGGTCTTGACCTGAACTCTGCAACTGAATACTTGAAGTAGGAAGTAGGAAATCCAGTAGGGAAAATAGGGTCCTTGAAACAGAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>GAGAAGCTGAGCACCCATGCTGGAACTCACCATATAGATGCCTCACTGCTTTTCATTTCTAAGTTTCTCCTCCATGTCTTTTTCCTCTTGCCAGTGTTTAGATAAAATTATTTCTATTTGATACATTTTTCTTCACTCTTGTCCTTAATGGGTCAAGTCTCATGTGGCTTCATAGCCCTGACAGACAGTAGTATTGCTAttttggagtcaaggtctcgttctgtcggccaagctggagtgcagtggcaccatcagggctcactgcagccttgacctccgaggctcaaggaatcctcccacctcagcctcagccttccggatagttggtactacagATGATCCAGCTCTGTCGGAGGCACGTAGGCACAGCCAAATCTCATGCTGTACATTGATCACCTGTCCAACCTTTGCCTAGAGTGGGAGCCCCCAGTTCCTTCGAGATCCAACATTACCTGTCTGTAAAGAAGAAGAGGAGGAGGGAGACAGCGGGGAGGATCCGGTGGCAGTTTAACACCAGAGCAGGTCCAATGTTTACTTTTACCCTTTTGGAGCTATTAGAAGGGCTGAATAAAGGGAACATGCAGCTCTGCAGCAATATTCTGATAATGTATTGCAGTGCGGCTCACATCACTGTCCACCACCACCTGGAGCGGCTCATCAGAACTGAAGGGGAGTTTTCACTTACCTTATTGAGCGTGATTCTGTTCTACTTGATATTTCCTTCACCACCTCATGTCATTTCTCATGGATTTGGTTATGATGGAAAGGAAGAATGCAGAGGAGGAGAAAAGTGACAGATCCTCCATTTTTGTTGGGATGCGGGCATTTTGAATGTGATCATCTTTGCTGAATGTCATTATTTGATAACATTTTGTTTATGTTACTTAAACATCATTGGATAAATTTGAACTCCATGGGATTTTATCTGTGGATTCAGCTTCTGTTGGACAACTAGCCTCATCTCCAGTATCCTGCTGGTTCACTCTAATTGGTCATTCCTAATGCATTAGATTATCAAAAAGTATAAATTCGCTGTGAGTGAGTGGTGTTGGCAGTGTTTGTATACCATGATGCATGGAGTGTTTGACGAAGAAACAAAAAACACCAAAAATTGCGAGCCTTTACCCTCCTCTATTTCTTTAATCTGTTGTTTGAAGAACCGCATTTTGAGGGTGTAACCAGTAGTCACCTCTGGGCCAGGTTGGAAAAGAAATCAATTTTTTAAACCACTAATGCTTGCCAAGAAATCGCCTTATGAGAACATGGTGTGTGTCTCTGACAATGCGTGGCACATCTAAATTGATCATTCATAATTTTATCTACCCAGTCATGTACTGGAGAGTGGCAAAAGTCTGAGGCACCTGCATATCTCTAGTCCCTGTGTTCTGCACATCCCCACGGTGGGGACGCCACCAAGCCTCAGACTCTTACCATCCCGGTGCATGCAGGTCTCCATGAAGAAGCTGGGACTCATTCACATTTCAAGATCCAAATGCTGTGCAAACAGTGTAAGCTTAGATTTTCTGTAAATGAAGGGTCATTTCTCTTTTTTTTTTTTTTTAAAGAAAATGTGTCTGCAACATGGATTCCAAAGCATTTTCAGCATCAAACATGAAAACATTGATGAATGAGGAACAATCACAAAAGCTGTGTCTCTGTATATAGCTCTACACAACATGTATGTGGATACAGTCATTATTTAAAGCACATGCCAGGGAAAAAGACCAAATTTTGAGGTCTTTTACATACAGTGATATGGTACTAAGGAGAATTAAACTCCTACTGCTTCCTCTGAATATTAAGAAACAATTTAAATTGTTATAACTTCATAAAACTCATGACTGAGTCTGGCAAACATGTGCAACTCTTGTATTGCTCCATTTTCTTGTCAATGGAAGAAACCCTTCCACGTGTATGCAAGTGGGAGATGAAAACCTGCATTTTTAAAGGACAAACAGTGAATTTAAGCATGAGTGGCCTTAATAAATATAGTTGTCTTTCTTTGCTGCTGTGGAAAGGATTCTAAACAGATGTCCCTGAAGTCTTGCATTGAATTTAGTCATTATTATTACTTTTTAAAATGTTGGTGCAATTAACTCTGGACCTCTCTTGTGAGCCATAGAGATATTTAAAAGACAAACACCTTATTTGTCGGGGAAGATGAAACCGTCCCTGAGTTGCACCATTCTTTCTTGGTGCATTCGCGGTTAAGATACTCAAGCAGGTTTCTTGCTTCTGGCTTTGTTCTTGTCATCAGTAAGTATAACAAACTATGTAATGCTTATGTGTTGCATAAACAATCCAAATGCATTCATGTTTTAAAAGTTTGTCCTTTAACTATCAGAGGGATCTAGGTCTTGGTTAGAGAAGTAAGCAGAGTTCTTTGCAAGCTTATTTAGCACATTTTGACACAATGTTGCACTGAAAACCCAGGCCACAAATGTGTCCCAGTGAACAGTTTGGATGTCCTCAAAGAAGTGGTTCTCACTGCCTCCTACAACCAGGTCTTGACCTGAACTCTGCAACTGAATACTTGAAGTAGGAAGTAGGAAATCCAGTAGGGAAAATAGGGTCCTTGAAACAGAAAAAAAAAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG035232]]
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[[Category:Sense]][[Category:NONHSAG035232]][[Category:Transcripts]]

Latest revision as of 00:33, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT090034

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2594 nt

Genomic location

chr3-:55543262..55644938

Exon number

3

Exons

55543262..55545304,55640779..55640994,55644604..55644938

Genome context

Sequence
000001 GAGAAGCTGA GCACCCATGC TGGAACTCAC CATATAGATG CCTCACTGCT TTTCATTTCT AAGTTTCTCC TCCATGTCTT 000080
000081 TTTCCTCTTG CCAGTGTTTA GATAAAATTA TTTCTATTTG ATACATTTTT CTTCACTCTT GTCCTTAATG GGTCAAGTCT 000160
000161 CATGTGGCTT CATAGCCCTG ACAGACAGTA GTATTGCTAt tttggagtca aggtctcgtt ctgtcggcca agctggagtg 000240
000241 cagtggcacc atcagggctc actgcagcct tgacctccga ggctcaagga atcctcccac ctcagcctca gccttccgga 000320
000321 tagttggtac tacagATGAT CCAGCTCTGT CGGAGGCACG TAGGCACAGC CAAATCTCAT GCTGTACATT GATCACCTGT 000400
000401 CCAACCTTTG CCTAGAGTGG GAGCCCCCAG TTCCTTCGAG ATCCAACATT ACCTGTCTGT AAAGAAGAAG AGGAGGAGGG 000480
000481 AGACAGCGGG GAGGATCCGG TGGCAGTTTA ACACCAGAGC AGGTCCAATG TTTACTTTTA CCCTTTTGGA GCTATTAGAA 000560
000561 GGGCTGAATA AAGGGAACAT GCAGCTCTGC AGCAATATTC TGATAATGTA TTGCAGTGCG GCTCACATCA CTGTCCACCA 000640
000641 CCACCTGGAG CGGCTCATCA GAACTGAAGG GGAGTTTTCA CTTACCTTAT TGAGCGTGAT TCTGTTCTAC TTGATATTTC 000720
000721 CTTCACCACC TCATGTCATT TCTCATGGAT TTGGTTATGA TGGAAAGGAA GAATGCAGAG GAGGAGAAAA GTGACAGATC 000800
000801 CTCCATTTTT GTTGGGATGC GGGCATTTTG AATGTGATCA TCTTTGCTGA ATGTCATTAT TTGATAACAT TTTGTTTATG 000880
000881 TTACTTAAAC ATCATTGGAT AAATTTGAAC TCCATGGGAT TTTATCTGTG GATTCAGCTT CTGTTGGACA ACTAGCCTCA 000960
000961 TCTCCAGTAT CCTGCTGGTT CACTCTAATT GGTCATTCCT AATGCATTAG ATTATCAAAA AGTATAAATT CGCTGTGAGT 001040
001041 GAGTGGTGTT GGCAGTGTTT GTATACCATG ATGCATGGAG TGTTTGACGA AGAAACAAAA AACACCAAAA ATTGCGAGCC 001120
001121 TTTACCCTCC TCTATTTCTT TAATCTGTTG TTTGAAGAAC CGCATTTTGA GGGTGTAACC AGTAGTCACC TCTGGGCCAG 001200
001201 GTTGGAAAAG AAATCAATTT TTTAAACCAC TAATGCTTGC CAAGAAATCG CCTTATGAGA ACATGGTGTG TGTCTCTGAC 001280
001281 AATGCGTGGC ACATCTAAAT TGATCATTCA TAATTTTATC TACCCAGTCA TGTACTGGAG AGTGGCAAAA GTCTGAGGCA 001360
001361 CCTGCATATC TCTAGTCCCT GTGTTCTGCA CATCCCCACG GTGGGGACGC CACCAAGCCT CAGACTCTTA CCATCCCGGT 001440
001441 GCATGCAGGT CTCCATGAAG AAGCTGGGAC TCATTCACAT TTCAAGATCC AAATGCTGTG CAAACAGTGT AAGCTTAGAT 001520
001521 TTTCTGTAAA TGAAGGGTCA TTTCTCTTTT TTTTTTTTTT TAAAGAAAAT GTGTCTGCAA CATGGATTCC AAAGCATTTT 001600
001601 CAGCATCAAA CATGAAAACA TTGATGAATG AGGAACAATC ACAAAAGCTG TGTCTCTGTA TATAGCTCTA CACAACATGT 001680
001681 ATGTGGATAC AGTCATTATT TAAAGCACAT GCCAGGGAAA AAGACCAAAT TTTGAGGTCT TTTACATACA GTGATATGGT 001760
001761 ACTAAGGAGA ATTAAACTCC TACTGCTTCC TCTGAATATT AAGAAACAAT TTAAATTGTT ATAACTTCAT AAAACTCATG 001840
001841 ACTGAGTCTG GCAAACATGT GCAACTCTTG TATTGCTCCA TTTTCTTGTC AATGGAAGAA ACCCTTCCAC GTGTATGCAA 001920
001921 GTGGGAGATG AAAACCTGCA TTTTTAAAGG ACAAACAGTG AATTTAAGCA TGAGTGGCCT TAATAAATAT AGTTGTCTTT 002000
002001 CTTTGCTGCT GTGGAAAGGA TTCTAAACAG ATGTCCCTGA AGTCTTGCAT TGAATTTAGT CATTATTATT ACTTTTTAAA 002080
002081 ATGTTGGTGC AATTAACTCT GGACCTCTCT TGTGAGCCAT AGAGATATTT AAAAGACAAA CACCTTATTT GTCGGGGAAG 002160
002161 ATGAAACCGT CCCTGAGTTG CACCATTCTT TCTTGGTGCA TTCGCGGTTA AGATACTCAA GCAGGTTTCT TGCTTCTGGC 002240
002241 TTTGTTCTTG TCATCAGTAA GTATAACAAA CTATGTAATG CTTATGTGTT GCATAAACAA TCCAAATGCA TTCATGTTTT 002320
002321 AAAAGTTTGT CCTTTAACTA TCAGAGGGAT CTAGGTCTTG GTTAGAGAAG TAAGCAGAGT TCTTTGCAAG CTTATTTAGC 002400
002401 ACATTTTGAC ACAATGTTGC ACTGAAAACC CAGGCCACAA ATGTGTCCCA GTGAACAGTT TGGATGTCCT CAAAGAAGTG 002480
002481 GTTCTCACTG CCTCCTACAA CCAGGTCTTG ACCTGAACTC TGCAACTGAA TACTTGAAGT AGGAAGTAGG AAATCCAGTA 002560
002561 GGGAAAATAG GGTCCTTGAA ACAGAAAAAA AAAA
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Predicted Small Protein

Name NONHSAT090034_smProtein_527:793
Length 89
Molecular weight 9979.5383
Aromaticity 0.102272727273
Instability index 51.7398863636
Isoelectric point 6.01690673828
Runs 12
Runs residual 0.005
Runs probability 0.0373829712066
Amino acid sequence MFTFTLLELLEGLNKGNMQLCSNILIMYCSAAHITVHHHLERLIRTEGEFSLTLLSVILF
YLIFPSPPHVISHGFGYDGKEECRGGEK
Secondary structure LLLHHHHHHHHHHLLLLHHHHHHHHHHHHHHHLLHHHHHHHHHHHLLLLLHHHHHHHHHH
HHEELLLLEEEELLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLHHHHHHHHHH
HHHHHHHHLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiTTTTTTTTTT
TTTTTTTToooooooooooooooooooo