Difference between revisions of "NONHSAT131208"
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sequence = <dnaseq>TATACAATTTGGGTTGTGGTTGCTGCGTATCTGTTTCAAATGGGTTATGGGCTCTTCTCACACTTTCAGGTCAAAGGGGACTTTGGAATCCATAGTGTACCTATGTATGCATGTATGATCATGGATCAGCCTTCCCATTTCTGTCGCTGTGTCCCTATATGGTTCATGATCATGTATGTTACTTCACTCGAAGGCCATACACAATCCAAACAAAATAAAACACAGAAACTGTGTTGGCTATTTTGACTTTCTGTTGAAACTATTCTCTTTGGTCatatatatatattttaaaaatattatatatatatatatttttaaaaaacattttatatatatatatatTTTTTTttccagtgattatcctgcctcagcctcccaagtagctgggattacaggcacctgccatcatgcccggctaaattttttttgtgtgtgtatttttgtagatacagggtttcaccatgttagccaggctcgtcttcaactcctgatctcaggtgatccgccggcctcagcctcccagagtgctgggattacaggcgtgggccaccacgcctggagatagatagatagatagatagatagatagatagatagatagataTATGTAATCTTTTTCAGTATATTCTCAGGGTGTGTTTGAGGAAAGCTTTTTTTTTTTTTGGCCATTGTCCAAGGGTTTAGAACTGAATGGGAATGTCTGTAAATGGATCTGATGGAGGTTGGAATGTGTATCAGCTTTTAATCATCACTGTAACAAATCACTAAAATATTCTCtttattatctctcactttagaagtgtgggagggctggactgatgactctgcttatagtcctacaaggacaaaatcaaggtgctcttgggctccttatgaaggccctagggcagaatgtgtgtccaagcacatacaggttagagcagaattcaacttcttgtagttgtaggagtgaggtcccaattcatcactggctggtagttggggcctctcagcaatgtcaggctgcctgcattgctcttcatagtgcccagttcattttctaaaccagcaatggtgcagagagacattctcctgcttctagtttctctggcttcccctcacccacacctctcttctgtgtctcttctgcctccaaccagagttaaatctcttaagtgctcatgtgattacatggagcccactgcatgaatcacgatcgtctcctaaggtctgcaaccttaattacatctgcaaaatcccttatgtgatg</dnaseq>| | sequence = <dnaseq>TATACAATTTGGGTTGTGGTTGCTGCGTATCTGTTTCAAATGGGTTATGGGCTCTTCTCACACTTTCAGGTCAAAGGGGACTTTGGAATCCATAGTGTACCTATGTATGCATGTATGATCATGGATCAGCCTTCCCATTTCTGTCGCTGTGTCCCTATATGGTTCATGATCATGTATGTTACTTCACTCGAAGGCCATACACAATCCAAACAAAATAAAACACAGAAACTGTGTTGGCTATTTTGACTTTCTGTTGAAACTATTCTCTTTGGTCatatatatatattttaaaaatattatatatatatatatttttaaaaaacattttatatatatatatatTTTTTTttccagtgattatcctgcctcagcctcccaagtagctgggattacaggcacctgccatcatgcccggctaaattttttttgtgtgtgtatttttgtagatacagggtttcaccatgttagccaggctcgtcttcaactcctgatctcaggtgatccgccggcctcagcctcccagagtgctgggattacaggcgtgggccaccacgcctggagatagatagatagatagatagatagatagatagatagatagataTATGTAATCTTTTTCAGTATATTCTCAGGGTGTGTTTGAGGAAAGCTTTTTTTTTTTTTGGCCATTGTCCAAGGGTTTAGAACTGAATGGGAATGTCTGTAAATGGATCTGATGGAGGTTGGAATGTGTATCAGCTTTTAATCATCACTGTAACAAATCACTAAAATATTCTCtttattatctctcactttagaagtgtgggagggctggactgatgactctgcttatagtcctacaaggacaaaatcaaggtgctcttgggctccttatgaaggccctagggcagaatgtgtgtccaagcacatacaggttagagcagaattcaacttcttgtagttgtaggagtgaggtcccaattcatcactggctggtagttggggcctctcagcaatgtcaggctgcctgcattgctcttcatagtgcccagttcattttctaaaccagcaatggtgcagagagacattctcctgcttctagtttctctggcttcccctcacccacacctctcttctgtgtctcttctgcctccaaccagagttaaatctcttaagtgctcatgtgattacatggagcccactgcatgaatcacgatcgtctcctaaggtctgcaaccttaattacatctgcaaaatcccttatgtgatg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:NONHSAG052214]] | + | [[Category:Intronic(AS)]][[Category:NONHSAG052214]][[Category:Transcripts]] |
Latest revision as of 07:17, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131208 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(AS) |
| Length |
1249 nt |
| Genomic location |
chr9+:39159068..39160316 |
| Exon number |
1 |
| Exons |
39159068..39160316 |
| Genome context |
|
| Sequence |
000001 TATACAATTT GGGTTGTGGT TGCTGCGTAT CTGTTTCAAA TGGGTTATGG GCTCTTCTCA CACTTTCAGG TCAAAGGGGA 000080
000081 CTTTGGAATC CATAGTGTAC CTATGTATGC ATGTATGATC ATGGATCAGC CTTCCCATTT CTGTCGCTGT GTCCCTATAT 000160 000161 GGTTCATGAT CATGTATGTT ACTTCACTCG AAGGCCATAC ACAATCCAAA CAAAATAAAA CACAGAAACT GTGTTGGCTA 000240 000241 TTTTGACTTT CTGTTGAAAC TATTCTCTTT GGTCatatat atatatttta aaaatattat atatatatat atttttaaaa 000320 000321 aacattttat atatatatat atTTTTTTtt ccagtgatta tcctgcctca gcctcccaag tagctgggat tacaggcacc 000400 000401 tgccatcatg cccggctaaa ttttttttgt gtgtgtattt ttgtagatac agggtttcac catgttagcc aggctcgtct 000480 000481 tcaactcctg atctcaggtg atccgccggc ctcagcctcc cagagtgctg ggattacagg cgtgggccac cacgcctgga 000560 000561 gatagataga tagatagata gatagataga tagatagata gataTATGTA ATCTTTTTCA GTATATTCTC AGGGTGTGTT 000640 000641 TGAGGAAAGC TTTTTTTTTT TTTGGCCATT GTCCAAGGGT TTAGAACTGA ATGGGAATGT CTGTAAATGG ATCTGATGGA 000720 000721 GGTTGGAATG TGTATCAGCT TTTAATCATC ACTGTAACAA ATCACTAAAA TATTCTCttt attatctctc actttagaag 000800 000801 tgtgggaggg ctggactgat gactctgctt atagtcctac aaggacaaaa tcaaggtgct cttgggctcc ttatgaaggc 000880 000881 cctagggcag aatgtgtgtc caagcacata caggttagag cagaattcaa cttcttgtag ttgtaggagt gaggtcccaa 000960 000961 ttcatcactg gctggtagtt ggggcctctc agcaatgtca ggctgcctgc attgctcttc atagtgccca gttcattttc 001040 001041 taaaccagca atggtgcaga gagacattct cctgcttcta gtttctctgg cttcccctca cccacacctc tcttctgtgt 001120 001121 ctcttctgcc tccaaccaga gttaaatctc ttaagtgctc atgtgattac atggagccca ctgcatgaat cacgatcgtc 001200 001201 tcctaaggtc tgcaacctta attacatctg caaaatccct tatgtgatg |
Predicted Small Protein
| Name | NONHSAT131208_smProtein_818:1042 |
| Length | 75 |
| Molecular weight | 8015.2591 |
| Aromaticity | 0.0540540540541 |
| Instability index | 44.7824324324 |
| Isoelectric point | 7.67474365234 |
| Runs | 13 |
| Runs residual | 0.0330257086355 |
| Runs probability | 0.0441006617477 |
| Amino acid sequence | MTLLIVLQGQNQGALGLLMKALGQNVCPSTYRLEQNSTSCSCRSEVPIHHWLVVGASQQC QAACIALHSAQFIF |
| Secondary structure | LEEEEEELLLLHHHHHHHHHHHHLLLLLLLEEEELLLLEEELLLLLLEEEEEEELLHHHH HHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
