Difference between revisions of "NONHSAT131269"
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sequence = <dnaseq>CTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACACGCCGACACTTCAGCACCAGTGGCGGTGGCCACCACTGTGGGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCTATGCGCGCCTTGCCTCCCACCGGCGCCTTCCCCGGCCTCTGGTTTTTGTCCCCGCCAGCGGCTCCGACTCCATCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGGGAATGTGGGATTGTTGTTAATGTAATTAGTTAAGATGAGGTCATGCTGTAATAGGGTGGGCCCCCTAATCCAATATGATTTGTGTCTTTATAAAAAAGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAA</dnaseq>| | sequence = <dnaseq>CTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACACGCCGACACTTCAGCACCAGTGGCGGTGGCCACCACTGTGGGCGGAGATGGCTGCGACGCGTGCGCAGGTAAAGTCTATGCGCGCCTTGCCTCCCACCGGCGCCTTCCCCGGCCTCTGGTTTTTGTCCCCGCCAGCGGCTCCGACTCCATCCAGATCTCGATCCCAAACTCCCTCCTGCCAGAATCTGGACCCGAATCCACCCATTGCCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGGGAATGTGGGATTGTTGTTAATGTAATTAGTTAAGATGAGGTCATGCTGTAATAGGGTGGGCCCCCTAATCCAATATGATTTGTGTCTTTATAAAAAAGGGAAATTTGTGCACAGAGATAACACAGGGGATATGCCATATGAAGATGAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG052261]] | + | [[Category:Intergenic]][[Category:NONHSAG052261]][[Category:Transcripts]] |
Latest revision as of 07:17, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131269 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
551 nt |
Genomic location |
chr9-:41948828..41954891 |
Exon number |
4 |
Exons |
41948828..41948970,41953731..41953779,41954504..41954636,41954666..41954891 |
Genome context |
|
Sequence |
000001 CTTGTCCCAA CCGTACAGAT GAGAAAGCTG AGACTCAGGG CCAGCAACCC GGGTCCCAGC GGAGCGCCCG GCACACGCCG 000080
000081 ACACTTCAGC ACCAGTGGCG GTGGCCACCA CTGTGGGCGG AGATGGCTGC GACGCGTGCG CAGGTAAAGT CTATGCGCGC 000160 000161 CTTGCCTCCC ACCGGCGCCT TCCCCGGCCT CTGGTTTTTG TCCCCGCCAG CGGCTCCGAC TCCATCCAGA TCTCGATCCC 000240 000241 AAACTCCCTC CTGCCAGAAT CTGGACCCGA ATCCACCCAT TGCCCGTTTT CCGCTGCCGC TGGAGAGAAT CTCTGAGGTC 000320 000321 CCCAGGAGAG CCTGCCTGCA CGGAAGAGAC GCCTCCTCGA TTAAATGCTG TTTTCCATGA CCGTCTCTGT TCTTCCCATA 000400 000401 CGGGAATGTG GGATTGTTGT TAATGTAATT AGTTAAGATG AGGTCATGCT GTAATAGGGT GGGCCCCCTA ATCCAATATG 000480 000481 ATTTGTGTCT TTATAAAAAA GGGAAATTTG TGCACAGAGA TAACACAGGG GATATGCCAT ATGAAGATGA A |
Predicted Small Protein
Name | NONHSAT131269_smProtein_122:379 |
Length | 86 |
Molecular weight | 9224.645 |
Aromaticity | 0.0588235294118 |
Instability index | 79.9811764706 |
Isoelectric point | 10.6895141602 |
Runs | 9 |
Runs residual | 0.0306595365419 |
Runs probability | 0.0432000628078 |
Amino acid sequence | MAATRAQVKSMRALPPTGAFPGLWFLSPPAAPTPSRSRSQTPSCQNLDPNPPIARFPLPL ERISEVPRRACLHGRDASSIKCCFP |
Secondary structure | LLLHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLH HHHLLLLHHHHLLLLLLLLLEELLL |
PRMN | - |
PiMo | - |