Difference between revisions of "NONHSAT037103"

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sequence = <dnaseq>CAGTCGTCCCTTTGTCTTTTGAAGTTACTCCCACTGTGGAAGAACAAATGGACACAGTCACAGGGCCAAATGAGGAGTTCACACCAGTTCTGGGATCTCCAGTGACACCTCCTGGAATAATGGTGGGGGAACCCAGCATTTCCCCTGCACTTCCTGCTTTGGAGGCATCCTCTGAGAGAAGAACTGTTGTTCCATCTATTACTCGTGTTAATACAGCTGCCTCATATGGCCTGGACCAACTTGAATCTGAAGGTATTCATGCTTTGAAGGGGATCTTTTCAAGGACTGGTTGAGTGAGTCACTGAGCAAATGTTTTTGAAAAAGAATTAAGTAGGAGTATATTCAATCTGCAGTATAGATcagaggacagtaaactacagctgggccaaatctggcctgccacttgtttttgaatggtttgtaagctaagaatggtttttacattttgaaatgattgaaaaaaaaagtcaaaagaagaataatattttgtgacatagaaaagttataaaaattcaaattccagtgttcataaataaagctatattggaacacagcca</dnaseq>|
 
sequence = <dnaseq>CAGTCGTCCCTTTGTCTTTTGAAGTTACTCCCACTGTGGAAGAACAAATGGACACAGTCACAGGGCCAAATGAGGAGTTCACACCAGTTCTGGGATCTCCAGTGACACCTCCTGGAATAATGGTGGGGGAACCCAGCATTTCCCCTGCACTTCCTGCTTTGGAGGCATCCTCTGAGAGAAGAACTGTTGTTCCATCTATTACTCGTGTTAATACAGCTGCCTCATATGGCCTGGACCAACTTGAATCTGAAGGTATTCATGCTTTGAAGGGGATCTTTTCAAGGACTGGTTGAGTGAGTCACTGAGCAAATGTTTTTGAAAAAGAATTAAGTAGGAGTATATTCAATCTGCAGTATAGATcagaggacagtaaactacagctgggccaaatctggcctgccacttgtttttgaatggtttgtaagctaagaatggtttttacattttgaaatgattgaaaaaaaaagtcaaaagaagaataatattttgtgacatagaaaagttataaaaattcaaattccagtgttcataaataaagctatattggaacacagcca</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG015096]]
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[[Category:Sense]][[Category:NONHSAG015096]][[Category:Transcripts]]

Latest revision as of 21:38, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT037103

Source

NONCODE4.0

Same with

,

Classification

sense

Length

557 nt

Genomic location

chr14-:58597925..58599849

Exon number

2

Exons

58597925..58598439,58599808..58599849

Genome context

Sequence
000001 CAGTCGTCCC TTTGTCTTTT GAAGTTACTC CCACTGTGGA AGAACAAATG GACACAGTCA CAGGGCCAAA TGAGGAGTTC 000080
000081 ACACCAGTTC TGGGATCTCC AGTGACACCT CCTGGAATAA TGGTGGGGGA ACCCAGCATT TCCCCTGCAC TTCCTGCTTT 000160
000161 GGAGGCATCC TCTGAGAGAA GAACTGTTGT TCCATCTATT ACTCGTGTTA ATACAGCTGC CTCATATGGC CTGGACCAAC 000240
000241 TTGAATCTGA AGGTATTCAT GCTTTGAAGG GGATCTTTTC AAGGACTGGT TGAGTGAGTC ACTGAGCAAA TGTTTTTGAA 000320
000321 AAAGAATTAA GTAGGAGTAT ATTCAATCTG CAGTATAGAT cagaggacag taaactacag ctgggccaaa tctggcctgc 000400
000401 cacttgtttt tgaatggttt gtaagctaag aatggttttt acattttgaa atgattgaaa aaaaaagtca aaagaagaat 000480
000481 aatattttgt gacatagaaa agttataaaa attcaaattc cagtgttcat aaataaagct atattggaac acagcca
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Predicted Small Protein

Name NONHSAT037103_smProtein_47:292
Length 82
Molecular weight 8406.3818
Aromaticity 0.037037037037
Instability index 53.6481481481
Isoelectric point 4.67803955078
Runs 13
Runs residual 0.0183141198594
Runs probability 0.0235280529398
Amino acid sequence MDTVTGPNEEFTPVLGSPVTPPGIMVGEPSISPALPALEASSERRTVVPSITRVNTAASY
GLDQLESEGIHALKGIFSRTG
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLEEEEEEEEELLHHHL
LLLLHHHHLLLHHHLEEELLL
PRMN -
PiMo -