Difference between revisions of "NONHSAT131494"
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sequence = <dnaseq>GCTGCCATTGCGGATTTTGCCAGCTTCAGCCAGTTTAGTCCTAAGAAGGAACTTCTGACCCCAGACATCCTGTTTTCTAAAACTAAGCAGTTAAAGCTGAATGGGAATTTAGCTCTGTCACATAGGCATTTGTTGGGCAACAAAAGCAGGGTAGGGCTCCAGCTAAGCCACGTAGGCACTACGATGGGCAACAGAAAGGTTGGTTTCTGGGCAATTCAGAGAAACCAAGGACAGCTACCCCCAGAACTCAGAGTAGCCAACTGGGCTGCTCACAGGAGATGCCTTAACTGAAAGGTGATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAGCTCAGAGGCTGTCCTGGAGGAGACGTGGAGACAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAGAGCTCAGAGGATGTCCCAGAGAAGACGTGGAGAGAGTTCAGAGGCTGTCCCGGAGAAGACGTGGAAAGAGCTCAGAAACTCAGAGACTGTCCCGGAGAAGACATGGAAACAGCTCAGAGGCTGTCTGCAAGAAGACGTGCAGAGAGTTCAGAGGCTGTCCCGGAGAAGACATGGAGAGAGCTCAAAGGCTGTCCACAAGAAGATGTGGAGAGAGTTCAGAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTTTGGATAATTATTGCAATCAATTTTAGTAATTCAGGTGTTAAATCACAGTCAAGCACCTATTTACCTAGTGTGGTCTGATGAATTTCACTTCTTTGATACTTTTTGAGAGAGCTGAGAGTCCATTTCCTGAGGAAGAAACTCAGAGAAAACAAATGTAAAATCCTTAAGTAAGTCATATTTGGTTGGGAAGATCAAAGAAATCACCCAGTCTCCCACATCCGAAATTGTGCAGTCTGGACTGTCAGGAACAAAAGTGAAAGAGAGACGTCATCAAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGAGGGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTGTCTCTACTAAAAATAAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGAGAGGCAGAGGTTGCAATAAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGAGACAAAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAATGACTAAAATTAAGAAGATTGATGATTCCAAATATTGGTAAAGATGTAGAACAACTAGAACTCCCACATATTGCTGATGAAAATGAAGAATAATACATTACTTTGGAAAATACTTTGGTACTGATTTACCATATGACCCCAAAATCTCACTTGTAGAAATTTATACAGGAAAAATGAAAACATATGCTCACAGAAAGCTTGTATACACATGCTTATGGCAATAAATTTATTTATAGTTGCCTATCAACAAGTGATGAACAAATATATTTTAGTATCTTGATACTACTTTCTAGCTAGAAAAGGAATACTACTAAGCAAAAATAGAGGATGAAGTAGTAATATACATAACATATATGAATTTAAAAACACCATGCTGATTGAAAGAAAACAATTATCAAATACACAGTGTAATATTCTATTCACAGAAAGTTTGAAAACAAAAAACTATAGTCTCTGAAAGAAAACCATTGGTTGCAGGAAGGTGGGGATTCATTGGCCACAAAAGGGACTGAGGAAACTTTTTATGGGTAATGGAAATATTTTATATCTTGATGGTGGCACCAATTATACAACTGTATGTACACATTTGTCAAAATTCTAATCGTATTATACACAACATGAGTGACTTTAACTGTCTATAAATTATATCTCAATAAAATTGGTCTTAAAAGAT</dnaseq>| | sequence = <dnaseq>GCTGCCATTGCGGATTTTGCCAGCTTCAGCCAGTTTAGTCCTAAGAAGGAACTTCTGACCCCAGACATCCTGTTTTCTAAAACTAAGCAGTTAAAGCTGAATGGGAATTTAGCTCTGTCACATAGGCATTTGTTGGGCAACAAAAGCAGGGTAGGGCTCCAGCTAAGCCACGTAGGCACTACGATGGGCAACAGAAAGGTTGGTTTCTGGGCAATTCAGAGAAACCAAGGACAGCTACCCCCAGAACTCAGAGTAGCCAACTGGGCTGCTCACAGGAGATGCCTTAACTGAAAGGTGATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAGCTCAGAGGCTGTCCTGGAGGAGACGTGGAGACAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAGAGCTCAGAGGATGTCCCAGAGAAGACGTGGAGAGAGTTCAGAGGCTGTCCCGGAGAAGACGTGGAAAGAGCTCAGAAACTCAGAGACTGTCCCGGAGAAGACATGGAAACAGCTCAGAGGCTGTCTGCAAGAAGACGTGCAGAGAGTTCAGAGGCTGTCCCGGAGAAGACATGGAGAGAGCTCAAAGGCTGTCCACAAGAAGATGTGGAGAGAGTTCAGAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTTTGGATAATTATTGCAATCAATTTTAGTAATTCAGGTGTTAAATCACAGTCAAGCACCTATTTACCTAGTGTGGTCTGATGAATTTCACTTCTTTGATACTTTTTGAGAGAGCTGAGAGTCCATTTCCTGAGGAAGAAACTCAGAGAAAACAAATGTAAAATCCTTAAGTAAGTCATATTTGGTTGGGAAGATCAAAGAAATCACCCAGTCTCCCACATCCGAAATTGTGCAGTCTGGACTGTCAGGAACAAAAGTGAAAGAGAGACGTCATCAAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGAGGGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTGTCTCTACTAAAAATAAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGAGAGGCAGAGGTTGCAATAAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGAGACAAAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAATGACTAAAATTAAGAAGATTGATGATTCCAAATATTGGTAAAGATGTAGAACAACTAGAACTCCCACATATTGCTGATGAAAATGAAGAATAATACATTACTTTGGAAAATACTTTGGTACTGATTTACCATATGACCCCAAAATCTCACTTGTAGAAATTTATACAGGAAAAATGAAAACATATGCTCACAGAAAGCTTGTATACACATGCTTATGGCAATAAATTTATTTATAGTTGCCTATCAACAAGTGATGAACAAATATATTTTAGTATCTTGATACTACTTTCTAGCTAGAAAAGGAATACTACTAAGCAAAAATAGAGGATGAAGTAGTAATATACATAACATATATGAATTTAAAAACACCATGCTGATTGAAAGAAAACAATTATCAAATACACAGTGTAATATTCTATTCACAGAAAGTTTGAAAACAAAAAACTATAGTCTCTGAAAGAAAACCATTGGTTGCAGGAAGGTGGGGATTCATTGGCCACAAAAGGGACTGAGGAAACTTTTTATGGGTAATGGAAATATTTTATATCTTGATGGTGGCACCAATTATACAACTGTATGTACACATTTGTCAAAATTCTAATCGTATTATACACAACATGAGTGACTTTAACTGTCTATAAATTATATCTCAATAAAATTGGTCTTAAAAGAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG052393]] | + | [[Category:Intergenic]][[Category:NONHSAG052393]][[Category:Transcripts]] |
Latest revision as of 07:18, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT131494 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1944 nt |
Genomic location |
chr9-:65487273..65494386 |
Exon number |
3 |
Exons |
65487273..65488372,65488701..65488784,65493627..65494386 |
Genome context |
|
Sequence |
000001 GCTGCCATTG CGGATTTTGC CAGCTTCAGC CAGTTTAGTC CTAAGAAGGA ACTTCTGACC CCAGACATCC TGTTTTCTAA 000080
000081 AACTAAGCAG TTAAAGCTGA ATGGGAATTT AGCTCTGTCA CATAGGCATT TGTTGGGCAA CAAAAGCAGG GTAGGGCTCC 000160 000161 AGCTAAGCCA CGTAGGCACT ACGATGGGCA ACAGAAAGGT TGGTTTCTGG GCAATTCAGA GAAACCAAGG ACAGCTACCC 000240 000241 CCAGAACTCA GAGTAGCCAA CTGGGCTGCT CACAGGAGAT GCCTTAACTG AAAGGTGATC AGACTCCACA GGAGACCCAG 000320 000321 AGAAGATGTG GAGGGAGCTC AGAGGCTGTC CTGGAGGAGA CGTGGAGACA GCTCAGAGGC TGTCCCAGAG AAGACGTGGA 000400 000401 AAGAGCTCAG AGGCTGTCCC AGAGAAGACG TGGAGAGCTC AGAGGATGTC CCAGAGAAGA CGTGGAGAGA GTTCAGAGGC 000480 000481 TGTCCCGGAG AAGACGTGGA AAGAGCTCAG AAACTCAGAG ACTGTCCCGG AGAAGACATG GAAACAGCTC AGAGGCTGTC 000560 000561 TGCAAGAAGA CGTGCAGAGA GTTCAGAGGC TGTCCCGGAG AAGACATGGA GAGAGCTCAA AGGCTGTCCA CAAGAAGATG 000640 000641 TGGAGAGAGT TCAGAGGCTG TCGTTACTGC TGCACTTGGC TGTTTTTCTT TGGATAATTA TTGCAATCAA TTTTAGTAAT 000720 000721 TCAGGTGTTA AATCACAGTC AAGCACCTAT TTACCTAGTG TGGTCTGATG AATTTCACTT CTTTGATACT TTTTGAGAGA 000800 000801 GCTGAGAGTC CATTTCCTGA GGAAGAAACT CAGAGAAAAC AAATGTAAAA TCCTTAAGTA AGTCATATTT GGTTGGGAAG 000880 000881 ATCAAAGAAA TCACCCAGTC TCCCACATCC GAAATTGTGC AGTCTGGACT GTCAGGAACA AAAGTGAAAG AGAGACGTCA 000960 000961 TCAAGGCCGG GCGCGGTGGC TCATGCCTGT AATCCCAGCA CTTTGGAAGG CCAAGGAGGG CGGATCATGA GGTCAGGAGT 001040 001041 TCAAGACCAG CCTGGCCAAT ATGGTGAAAC CCTGTCTGTC TCTACTAAAA ATAAAAAAAT TAGCCAGGCG TGGTGGCAGG 001120 001121 CACCTGTAAT CCCAGCTACT TGGGAGGCTG AGGCAGAAGA ATCACTTGAA CCTGAGAGGC AGAGGTTGCA ATAAGCCAAG 001200 001201 ATTGTGCCAT TGCACTCCAG CCTGGGAGAC AAAGCGAGAC TCCATCTCAA AAAAAAAAAA AAAAAAAAGA ATGACTAAAA 001280 001281 TTAAGAAGAT TGATGATTCC AAATATTGGT AAAGATGTAG AACAACTAGA ACTCCCACAT ATTGCTGATG AAAATGAAGA 001360 001361 ATAATACATT ACTTTGGAAA ATACTTTGGT ACTGATTTAC CATATGACCC CAAAATCTCA CTTGTAGAAA TTTATACAGG 001440 001441 AAAAATGAAA ACATATGCTC ACAGAAAGCT TGTATACACA TGCTTATGGC AATAAATTTA TTTATAGTTG CCTATCAACA 001520 001521 AGTGATGAAC AAATATATTT TAGTATCTTG ATACTACTTT CTAGCTAGAA AAGGAATACT ACTAAGCAAA AATAGAGGAT 001600 001601 GAAGTAGTAA TATACATAAC ATATATGAAT TTAAAAACAC CATGCTGATT GAAAGAAAAC AATTATCAAA TACACAGTGT 001680 001681 AATATTCTAT TCACAGAAAG TTTGAAAACA AAAAACTATA GTCTCTGAAA GAAAACCATT GGTTGCAGGA AGGTGGGGAT 001760 001761 TCATTGGCCA CAAAAGGGAC TGAGGAAACT TTTTATGGGT AATGGAAATA TTTTATATCT TGATGGTGGC ACCAATTATA 001840 001841 CAACTGTATG TACACATTTG TCAAAATTCT AATCGTATTA TACACAACAT GAGTGACTTT AACTGTCTAT AAATTATATC 001920 001921 TCAATAAAAT TGGTCTTAAA AGAT |
Predicted Small Protein
Name | NONHSAT131494_smProtein_1454:1567 |
Length | 38 |
Molecular weight | 4252.8114 |
Aromaticity | 0.162162162162 |
Instability index | 54.4945945946 |
Isoelectric point | 4.64935302734 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.03549347667 |
Amino acid sequence | MLTESLYTHAYGNKFIYSCLSTSDEQIYFSILILLSS |
Secondary structure | LLLHHHHHHHHLLLEEEELLLLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |