Difference between revisions of "NONHSAT131494"

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sequence = <dnaseq>GCTGCCATTGCGGATTTTGCCAGCTTCAGCCAGTTTAGTCCTAAGAAGGAACTTCTGACCCCAGACATCCTGTTTTCTAAAACTAAGCAGTTAAAGCTGAATGGGAATTTAGCTCTGTCACATAGGCATTTGTTGGGCAACAAAAGCAGGGTAGGGCTCCAGCTAAGCCACGTAGGCACTACGATGGGCAACAGAAAGGTTGGTTTCTGGGCAATTCAGAGAAACCAAGGACAGCTACCCCCAGAACTCAGAGTAGCCAACTGGGCTGCTCACAGGAGATGCCTTAACTGAAAGGTGATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAGCTCAGAGGCTGTCCTGGAGGAGACGTGGAGACAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAGAGCTCAGAGGATGTCCCAGAGAAGACGTGGAGAGAGTTCAGAGGCTGTCCCGGAGAAGACGTGGAAAGAGCTCAGAAACTCAGAGACTGTCCCGGAGAAGACATGGAAACAGCTCAGAGGCTGTCTGCAAGAAGACGTGCAGAGAGTTCAGAGGCTGTCCCGGAGAAGACATGGAGAGAGCTCAAAGGCTGTCCACAAGAAGATGTGGAGAGAGTTCAGAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTTTGGATAATTATTGCAATCAATTTTAGTAATTCAGGTGTTAAATCACAGTCAAGCACCTATTTACCTAGTGTGGTCTGATGAATTTCACTTCTTTGATACTTTTTGAGAGAGCTGAGAGTCCATTTCCTGAGGAAGAAACTCAGAGAAAACAAATGTAAAATCCTTAAGTAAGTCATATTTGGTTGGGAAGATCAAAGAAATCACCCAGTCTCCCACATCCGAAATTGTGCAGTCTGGACTGTCAGGAACAAAAGTGAAAGAGAGACGTCATCAAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGAGGGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTGTCTCTACTAAAAATAAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGAGAGGCAGAGGTTGCAATAAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGAGACAAAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAATGACTAAAATTAAGAAGATTGATGATTCCAAATATTGGTAAAGATGTAGAACAACTAGAACTCCCACATATTGCTGATGAAAATGAAGAATAATACATTACTTTGGAAAATACTTTGGTACTGATTTACCATATGACCCCAAAATCTCACTTGTAGAAATTTATACAGGAAAAATGAAAACATATGCTCACAGAAAGCTTGTATACACATGCTTATGGCAATAAATTTATTTATAGTTGCCTATCAACAAGTGATGAACAAATATATTTTAGTATCTTGATACTACTTTCTAGCTAGAAAAGGAATACTACTAAGCAAAAATAGAGGATGAAGTAGTAATATACATAACATATATGAATTTAAAAACACCATGCTGATTGAAAGAAAACAATTATCAAATACACAGTGTAATATTCTATTCACAGAAAGTTTGAAAACAAAAAACTATAGTCTCTGAAAGAAAACCATTGGTTGCAGGAAGGTGGGGATTCATTGGCCACAAAAGGGACTGAGGAAACTTTTTATGGGTAATGGAAATATTTTATATCTTGATGGTGGCACCAATTATACAACTGTATGTACACATTTGTCAAAATTCTAATCGTATTATACACAACATGAGTGACTTTAACTGTCTATAAATTATATCTCAATAAAATTGGTCTTAAAAGAT</dnaseq>|
 
sequence = <dnaseq>GCTGCCATTGCGGATTTTGCCAGCTTCAGCCAGTTTAGTCCTAAGAAGGAACTTCTGACCCCAGACATCCTGTTTTCTAAAACTAAGCAGTTAAAGCTGAATGGGAATTTAGCTCTGTCACATAGGCATTTGTTGGGCAACAAAAGCAGGGTAGGGCTCCAGCTAAGCCACGTAGGCACTACGATGGGCAACAGAAAGGTTGGTTTCTGGGCAATTCAGAGAAACCAAGGACAGCTACCCCCAGAACTCAGAGTAGCCAACTGGGCTGCTCACAGGAGATGCCTTAACTGAAAGGTGATCAGACTCCACAGGAGACCCAGAGAAGATGTGGAGGGAGCTCAGAGGCTGTCCTGGAGGAGACGTGGAGACAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAAAGAGCTCAGAGGCTGTCCCAGAGAAGACGTGGAGAGCTCAGAGGATGTCCCAGAGAAGACGTGGAGAGAGTTCAGAGGCTGTCCCGGAGAAGACGTGGAAAGAGCTCAGAAACTCAGAGACTGTCCCGGAGAAGACATGGAAACAGCTCAGAGGCTGTCTGCAAGAAGACGTGCAGAGAGTTCAGAGGCTGTCCCGGAGAAGACATGGAGAGAGCTCAAAGGCTGTCCACAAGAAGATGTGGAGAGAGTTCAGAGGCTGTCGTTACTGCTGCACTTGGCTGTTTTTCTTTGGATAATTATTGCAATCAATTTTAGTAATTCAGGTGTTAAATCACAGTCAAGCACCTATTTACCTAGTGTGGTCTGATGAATTTCACTTCTTTGATACTTTTTGAGAGAGCTGAGAGTCCATTTCCTGAGGAAGAAACTCAGAGAAAACAAATGTAAAATCCTTAAGTAAGTCATATTTGGTTGGGAAGATCAAAGAAATCACCCAGTCTCCCACATCCGAAATTGTGCAGTCTGGACTGTCAGGAACAAAAGTGAAAGAGAGACGTCATCAAGGCCGGGCGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGAAGGCCAAGGAGGGCGGATCATGAGGTCAGGAGTTCAAGACCAGCCTGGCCAATATGGTGAAACCCTGTCTGTCTCTACTAAAAATAAAAAAATTAGCCAGGCGTGGTGGCAGGCACCTGTAATCCCAGCTACTTGGGAGGCTGAGGCAGAAGAATCACTTGAACCTGAGAGGCAGAGGTTGCAATAAGCCAAGATTGTGCCATTGCACTCCAGCCTGGGAGACAAAGCGAGACTCCATCTCAAAAAAAAAAAAAAAAAAAAGAATGACTAAAATTAAGAAGATTGATGATTCCAAATATTGGTAAAGATGTAGAACAACTAGAACTCCCACATATTGCTGATGAAAATGAAGAATAATACATTACTTTGGAAAATACTTTGGTACTGATTTACCATATGACCCCAAAATCTCACTTGTAGAAATTTATACAGGAAAAATGAAAACATATGCTCACAGAAAGCTTGTATACACATGCTTATGGCAATAAATTTATTTATAGTTGCCTATCAACAAGTGATGAACAAATATATTTTAGTATCTTGATACTACTTTCTAGCTAGAAAAGGAATACTACTAAGCAAAAATAGAGGATGAAGTAGTAATATACATAACATATATGAATTTAAAAACACCATGCTGATTGAAAGAAAACAATTATCAAATACACAGTGTAATATTCTATTCACAGAAAGTTTGAAAACAAAAAACTATAGTCTCTGAAAGAAAACCATTGGTTGCAGGAAGGTGGGGATTCATTGGCCACAAAAGGGACTGAGGAAACTTTTTATGGGTAATGGAAATATTTTATATCTTGATGGTGGCACCAATTATACAACTGTATGTACACATTTGTCAAAATTCTAATCGTATTATACACAACATGAGTGACTTTAACTGTCTATAAATTATATCTCAATAAAATTGGTCTTAAAAGAT</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG052393]]
+
[[Category:Intergenic]][[Category:NONHSAG052393]][[Category:Transcripts]]

Latest revision as of 07:18, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT131494

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1944 nt

Genomic location

chr9-:65487273..65494386

Exon number

3

Exons

65487273..65488372,65488701..65488784,65493627..65494386

Genome context

Sequence
000001 GCTGCCATTG CGGATTTTGC CAGCTTCAGC CAGTTTAGTC CTAAGAAGGA ACTTCTGACC CCAGACATCC TGTTTTCTAA 000080
000081 AACTAAGCAG TTAAAGCTGA ATGGGAATTT AGCTCTGTCA CATAGGCATT TGTTGGGCAA CAAAAGCAGG GTAGGGCTCC 000160
000161 AGCTAAGCCA CGTAGGCACT ACGATGGGCA ACAGAAAGGT TGGTTTCTGG GCAATTCAGA GAAACCAAGG ACAGCTACCC 000240
000241 CCAGAACTCA GAGTAGCCAA CTGGGCTGCT CACAGGAGAT GCCTTAACTG AAAGGTGATC AGACTCCACA GGAGACCCAG 000320
000321 AGAAGATGTG GAGGGAGCTC AGAGGCTGTC CTGGAGGAGA CGTGGAGACA GCTCAGAGGC TGTCCCAGAG AAGACGTGGA 000400
000401 AAGAGCTCAG AGGCTGTCCC AGAGAAGACG TGGAGAGCTC AGAGGATGTC CCAGAGAAGA CGTGGAGAGA GTTCAGAGGC 000480
000481 TGTCCCGGAG AAGACGTGGA AAGAGCTCAG AAACTCAGAG ACTGTCCCGG AGAAGACATG GAAACAGCTC AGAGGCTGTC 000560
000561 TGCAAGAAGA CGTGCAGAGA GTTCAGAGGC TGTCCCGGAG AAGACATGGA GAGAGCTCAA AGGCTGTCCA CAAGAAGATG 000640
000641 TGGAGAGAGT TCAGAGGCTG TCGTTACTGC TGCACTTGGC TGTTTTTCTT TGGATAATTA TTGCAATCAA TTTTAGTAAT 000720
000721 TCAGGTGTTA AATCACAGTC AAGCACCTAT TTACCTAGTG TGGTCTGATG AATTTCACTT CTTTGATACT TTTTGAGAGA 000800
000801 GCTGAGAGTC CATTTCCTGA GGAAGAAACT CAGAGAAAAC AAATGTAAAA TCCTTAAGTA AGTCATATTT GGTTGGGAAG 000880
000881 ATCAAAGAAA TCACCCAGTC TCCCACATCC GAAATTGTGC AGTCTGGACT GTCAGGAACA AAAGTGAAAG AGAGACGTCA 000960
000961 TCAAGGCCGG GCGCGGTGGC TCATGCCTGT AATCCCAGCA CTTTGGAAGG CCAAGGAGGG CGGATCATGA GGTCAGGAGT 001040
001041 TCAAGACCAG CCTGGCCAAT ATGGTGAAAC CCTGTCTGTC TCTACTAAAA ATAAAAAAAT TAGCCAGGCG TGGTGGCAGG 001120
001121 CACCTGTAAT CCCAGCTACT TGGGAGGCTG AGGCAGAAGA ATCACTTGAA CCTGAGAGGC AGAGGTTGCA ATAAGCCAAG 001200
001201 ATTGTGCCAT TGCACTCCAG CCTGGGAGAC AAAGCGAGAC TCCATCTCAA AAAAAAAAAA AAAAAAAAGA ATGACTAAAA 001280
001281 TTAAGAAGAT TGATGATTCC AAATATTGGT AAAGATGTAG AACAACTAGA ACTCCCACAT ATTGCTGATG AAAATGAAGA 001360
001361 ATAATACATT ACTTTGGAAA ATACTTTGGT ACTGATTTAC CATATGACCC CAAAATCTCA CTTGTAGAAA TTTATACAGG 001440
001441 AAAAATGAAA ACATATGCTC ACAGAAAGCT TGTATACACA TGCTTATGGC AATAAATTTA TTTATAGTTG CCTATCAACA 001520
001521 AGTGATGAAC AAATATATTT TAGTATCTTG ATACTACTTT CTAGCTAGAA AAGGAATACT ACTAAGCAAA AATAGAGGAT 001600
001601 GAAGTAGTAA TATACATAAC ATATATGAAT TTAAAAACAC CATGCTGATT GAAAGAAAAC AATTATCAAA TACACAGTGT 001680
001681 AATATTCTAT TCACAGAAAG TTTGAAAACA AAAAACTATA GTCTCTGAAA GAAAACCATT GGTTGCAGGA AGGTGGGGAT 001760
001761 TCATTGGCCA CAAAAGGGAC TGAGGAAACT TTTTATGGGT AATGGAAATA TTTTATATCT TGATGGTGGC ACCAATTATA 001840
001841 CAACTGTATG TACACATTTG TCAAAATTCT AATCGTATTA TACACAACAT GAGTGACTTT AACTGTCTAT AAATTATATC 001920
001921 TCAATAAAAT TGGTCTTAAA AGAT
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Predicted Small Protein

Name NONHSAT131494_smProtein_1454:1567
Length 38
Molecular weight 4252.8114
Aromaticity 0.162162162162
Instability index 54.4945945946
Isoelectric point 4.64935302734
Runs 7
Runs residual 0.009422266303
Runs probability 0.03549347667
Amino acid sequence MLTESLYTHAYGNKFIYSCLSTSDEQIYFSILILLSS
Secondary structure LLLHHHHHHHHLLLEEEELLLLLHHHHHHHHHHHHLL
PRMN -
PiMo -