Difference between revisions of "NONHSAT090357"
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sequence = <dnaseq>ACACCCCCCACTTTCCCCTGCAATGGTATGATCTGCATTTGATCGTAAACTGGAGGTGCCAAGCTGTGACAGCTTCCTCAACTTCAGAGCCATTTGCTACAATCTAGGACAGCCCCATGTTCAATGATGCTTTCCTTTTCCATCAACAGGGGCAAATCGAAGTAGAGAGCGAAACCATCTTCAAGTTAGCAGCGTTTATTTTACAGTGATGAAAATGCCAGGAAAGATTTAAAGACATTACCAGCCTTTCCAACCAAAACTCTTCAGGAGCATCCATCCCTTGCCTACTGTGAGGACAGGGTAATTGAGCATTATTTGAAAATCAAAGGTCTCACTCGAGGTCAAGCTGTGGTTCAGTATATGAAAATAGTAGAAGCTCTACCGACTTACGGTGTCCATTATTATGCAGTAAAGGATAAGCAAGGACTTCCTTGGTGGCTTGGAATAAGCTATAAGGGAATTGGCCAATATGATATACAAGACAAGGTGAAGCCTCGGAAGTTATTCCAATGGAAACAGCTGGAGAACTTATATTTCCGTGAGAAAAAAT</dnaseq>| | sequence = <dnaseq>ACACCCCCCACTTTCCCCTGCAATGGTATGATCTGCATTTGATCGTAAACTGGAGGTGCCAAGCTGTGACAGCTTCCTCAACTTCAGAGCCATTTGCTACAATCTAGGACAGCCCCATGTTCAATGATGCTTTCCTTTTCCATCAACAGGGGCAAATCGAAGTAGAGAGCGAAACCATCTTCAAGTTAGCAGCGTTTATTTTACAGTGATGAAAATGCCAGGAAAGATTTAAAGACATTACCAGCCTTTCCAACCAAAACTCTTCAGGAGCATCCATCCCTTGCCTACTGTGAGGACAGGGTAATTGAGCATTATTTGAAAATCAAAGGTCTCACTCGAGGTCAAGCTGTGGTTCAGTATATGAAAATAGTAGAAGCTCTACCGACTTACGGTGTCCATTATTATGCAGTAAAGGATAAGCAAGGACTTCCTTGGTGGCTTGGAATAAGCTATAAGGGAATTGGCCAATATGATATACAAGACAAGGTGAAGCCTCGGAAGTTATTCCAATGGAAACAGCTGGAGAACTTATATTTCCGTGAGAAAAAAT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG035374]] | + | [[Category:Sense]][[Category:NONHSAG035374]][[Category:Transcripts]] |
Latest revision as of 00:35, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT090357 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
550 nt |
| Genomic location |
chr3-:69247877..69299399 |
| Exon number |
6 |
| Exons |
69247877..69247925,69265414..69265500,69267473..69267530,69271009..69271074,69273758..69273841,69299194..69299399 |
| Genome context |
|
| Sequence |
000001 ACACCCCCCA CTTTCCCCTG CAATGGTATG ATCTGCATTT GATCGTAAAC TGGAGGTGCC AAGCTGTGAC AGCTTCCTCA 000080
000081 ACTTCAGAGC CATTTGCTAC AATCTAGGAC AGCCCCATGT TCAATGATGC TTTCCTTTTC CATCAACAGG GGCAAATCGA 000160 000161 AGTAGAGAGC GAAACCATCT TCAAGTTAGC AGCGTTTATT TTACAGTGAT GAAAATGCCA GGAAAGATTT AAAGACATTA 000240 000241 CCAGCCTTTC CAACCAAAAC TCTTCAGGAG CATCCATCCC TTGCCTACTG TGAGGACAGG GTAATTGAGC ATTATTTGAA 000320 000321 AATCAAAGGT CTCACTCGAG GTCAAGCTGT GGTTCAGTAT ATGAAAATAG TAGAAGCTCT ACCGACTTAC GGTGTCCATT 000400 000401 ATTATGCAGT AAAGGATAAG CAAGGACTTC CTTGGTGGCT TGGAATAAGC TATAAGGGAA TTGGCCAATA TGATATACAA 000480 000481 GACAAGGTGA AGCCTCGGAA GTTATTCCAA TGGAAACAGC TGGAGAACTT ATATTTCCGT GAGAAAAAAT |
Predicted Small Protein
| Name | NONHSAT090357_smProtein_116:208 |
| Length | 31 |
| Molecular weight | 3515.9835 |
| Aromaticity | 0.166666666667 |
| Instability index | 53.02 |
| Isoelectric point | 4.39630126953 |
| Runs | 6 |
| Runs residual | 0.00225225225225 |
| Runs probability | 0.0402608490843 |
| Amino acid sequence | MFNDAFLFHQQGQIEVESETIFKLAAFILQ |
| Secondary structure | LLLHHHHHHHLLLEEEEHHHHHHHHHHHHL |
| PRMN | - |
| PiMo | - |
