Difference between revisions of "NONHSAT069067"

From LncRNAWiki
Jump to: navigation, search
Line 42: Line 42:
 
sequence = <dnaseq>ACCCACTCACTGGTGAGCTCCGCAAGAGTGTACTTCTCTCCGTCCCTGGAGCGCCACGGCGTGCTGGTGCATAGTAAGCATCTGTCCATGTCTGTCCAGTTGAATTTCTTGAGAGTCATTTGACCTTCTCAGCAGCTCTGGAGAACCCACATTGACCAGAGACTTTGCAGCCAGCTCACCCCTCCAAATCCCCGCCCTGGAGTCCCTGACCCAGGAATTTCTGCATCAGGCTGCTCAAACCTGAATTTGACAAAATTTCAAAGCGCTGTATCTTTATGTTGATAAGACAACGGATAAAGTGCCATACTTGGAACCTAGATCACTCAATGTTGCCTGTAGCTGAGTCCACTTCTGTCACTCACCCTGCATTGCCCTGCCAGGAGCAAGGGAGAGAAAGCCAGCCAGAAGGCATGGGCATGGGCTCAAATCGGCTTCTCCTGTGGCCACTGTGAAAGTTGATCATACAAAGGTCACTGTTGTCATAGCCAAGCAGAGTTATGAGACCACAGGAAAAAGCACTTGGACCACGTAACATTGCTCCAAGAGTATAACTGTCTCCAACCCTGGCTGCTGGAACAAGTGTTGCAACCTGAAACAGGTTTGATCTAATAGCTACAGAAACAACCTGCGGAAATCTAAGACTAGTTTCACCCACTCACCAATCAGAGCTTGCCGGATCCCCAAAACGTTGCTAGTGCTAATGAACTTGCTTTCCTAACAATCCATAACATTTCTCATTTTTATGAAACCTACAACCTTCTCTTTGCTCTTTGGACATACTGAAGACCACCCAGTCTGTGTGTATGCCCCAAACTGAAATTCTTGCTCCCCAAATAAAACATTTTAAACTTAGAGATTTGTCTGTATATTTTATTTGACTTTGACAACACCAGGGGCTCCGGCACAAATCTCCTCCTTCAAGCCCTTTTCTACACAGTCCCGTGGGTCTACCCTGAAAGAAGCCTGATGACGGCTCAAAGACACAATGTTACTGGGAGGTAAATTCAGGATTACTTGACCGAATGGCCCACCCGAGGTCACGGAGGCTGCTGGAGGAACAGAAAATGGTCTTCACCAAGTGAAGCATTGTCGGTCTTGGCCTGTGTCTGGCTGGAGAATGTTAAAATTCTGGGGACACAACAGAAAAGGCACAGTTGTGGGGACCAGGCCAATGTCAGCGTGAGAACTGGCTCCATCCCCCTCCCATGAACCAGCTCTGCGGCCAAGGCAGGTCTGCATTTCCTGGTCTGTGACACGGAGTCAGTAACATTGCCTACTTCCCGGGGCTATTTCCAGAGAAGTGAGGGAATGGGTGTGGAACGCCTGCCATCTGCGGAGCCCCGCATGAAACGTCTCTGTCTTTCCAGCCAGCCCTGAGCCAGGGAAGGGACTGGAAGCGCAGCGGGTGGCTGAGGCGGGCTTTCGGCAGCTTACCCCCAGCCTTGCCCCTCCCCGCCTGCTGAAACACAATCTATGGTTGTCGCCTTCCTGGAGATGTTAGCCGCCCCCTCCAGAGGTGGTTCCAAATCTACTTCTCATTTGGCTGATTTAGGAGAGGCTGCGAATCGGTCGCTATGGTTTCTTTATTTTCTCCTGACAGCTTAGGAATCATTTTTCCAATTATTCCCAGGGGAGGAAAAAGAAGTGGAGGAAGCCAGTGTTTGGAATGAGGGGAAGCTCACGGATCTGAAATGCAACCTCTTCTGCAGGAGACCCGGCACAGCTACCGGGACCCATCACCTCCCTGTAGGAACCCCGCCCAGCCCCCTCCAGCCAGCCCTGCGTGGTTGTGGCCCCACTGCAGAAACGCCTCCGCTTAACACTCCAGCCTCTCTTCTATTCGGTCAGGCCACAGCTGCTGACTTTGTGCCTGCTGTAGCAACCCCGAGCCCCCAAATAAACCCTCCCTCCCAGGGTGGCCTCTCTACGGGGGGAGACAGACGGTG</dnaseq>|
 
sequence = <dnaseq>ACCCACTCACTGGTGAGCTCCGCAAGAGTGTACTTCTCTCCGTCCCTGGAGCGCCACGGCGTGCTGGTGCATAGTAAGCATCTGTCCATGTCTGTCCAGTTGAATTTCTTGAGAGTCATTTGACCTTCTCAGCAGCTCTGGAGAACCCACATTGACCAGAGACTTTGCAGCCAGCTCACCCCTCCAAATCCCCGCCCTGGAGTCCCTGACCCAGGAATTTCTGCATCAGGCTGCTCAAACCTGAATTTGACAAAATTTCAAAGCGCTGTATCTTTATGTTGATAAGACAACGGATAAAGTGCCATACTTGGAACCTAGATCACTCAATGTTGCCTGTAGCTGAGTCCACTTCTGTCACTCACCCTGCATTGCCCTGCCAGGAGCAAGGGAGAGAAAGCCAGCCAGAAGGCATGGGCATGGGCTCAAATCGGCTTCTCCTGTGGCCACTGTGAAAGTTGATCATACAAAGGTCACTGTTGTCATAGCCAAGCAGAGTTATGAGACCACAGGAAAAAGCACTTGGACCACGTAACATTGCTCCAAGAGTATAACTGTCTCCAACCCTGGCTGCTGGAACAAGTGTTGCAACCTGAAACAGGTTTGATCTAATAGCTACAGAAACAACCTGCGGAAATCTAAGACTAGTTTCACCCACTCACCAATCAGAGCTTGCCGGATCCCCAAAACGTTGCTAGTGCTAATGAACTTGCTTTCCTAACAATCCATAACATTTCTCATTTTTATGAAACCTACAACCTTCTCTTTGCTCTTTGGACATACTGAAGACCACCCAGTCTGTGTGTATGCCCCAAACTGAAATTCTTGCTCCCCAAATAAAACATTTTAAACTTAGAGATTTGTCTGTATATTTTATTTGACTTTGACAACACCAGGGGCTCCGGCACAAATCTCCTCCTTCAAGCCCTTTTCTACACAGTCCCGTGGGTCTACCCTGAAAGAAGCCTGATGACGGCTCAAAGACACAATGTTACTGGGAGGTAAATTCAGGATTACTTGACCGAATGGCCCACCCGAGGTCACGGAGGCTGCTGGAGGAACAGAAAATGGTCTTCACCAAGTGAAGCATTGTCGGTCTTGGCCTGTGTCTGGCTGGAGAATGTTAAAATTCTGGGGACACAACAGAAAAGGCACAGTTGTGGGGACCAGGCCAATGTCAGCGTGAGAACTGGCTCCATCCCCCTCCCATGAACCAGCTCTGCGGCCAAGGCAGGTCTGCATTTCCTGGTCTGTGACACGGAGTCAGTAACATTGCCTACTTCCCGGGGCTATTTCCAGAGAAGTGAGGGAATGGGTGTGGAACGCCTGCCATCTGCGGAGCCCCGCATGAAACGTCTCTGTCTTTCCAGCCAGCCCTGAGCCAGGGAAGGGACTGGAAGCGCAGCGGGTGGCTGAGGCGGGCTTTCGGCAGCTTACCCCCAGCCTTGCCCCTCCCCGCCTGCTGAAACACAATCTATGGTTGTCGCCTTCCTGGAGATGTTAGCCGCCCCCTCCAGAGGTGGTTCCAAATCTACTTCTCATTTGGCTGATTTAGGAGAGGCTGCGAATCGGTCGCTATGGTTTCTTTATTTTCTCCTGACAGCTTAGGAATCATTTTTCCAATTATTCCCAGGGGAGGAAAAAGAAGTGGAGGAAGCCAGTGTTTGGAATGAGGGGAAGCTCACGGATCTGAAATGCAACCTCTTCTGCAGGAGACCCGGCACAGCTACCGGGACCCATCACCTCCCTGTAGGAACCCCGCCCAGCCCCCTCCAGCCAGCCCTGCGTGGTTGTGGCCCCACTGCAGAAACGCCTCCGCTTAACACTCCAGCCTCTCTTCTATTCGGTCAGGCCACAGCTGCTGACTTTGTGCCTGCTGTAGCAACCCCGAGCCCCCAAATAAACCCTCCCTCCCAGGGTGGCCTCTCTACGGGGGGAGACAGACGGTG</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG026969]]
+
[[Category:Intergenic]][[Category:NONHSAG026969]][[Category:Transcripts]]

Revision as of 09:58, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT069067

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1946 nt

Genomic location

chr2-:9897625..9910470

Exon number

2

Exons

9897625..9899428,9910328..9910470

Genome context

Sequence
000001 ACCCACTCAC TGGTGAGCTC CGCAAGAGTG TACTTCTCTC CGTCCCTGGA GCGCCACGGC GTGCTGGTGC ATAGTAAGCA 000080
000081 TCTGTCCATG TCTGTCCAGT TGAATTTCTT GAGAGTCATT TGACCTTCTC AGCAGCTCTG GAGAACCCAC ATTGACCAGA 000160
000161 GACTTTGCAG CCAGCTCACC CCTCCAAATC CCCGCCCTGG AGTCCCTGAC CCAGGAATTT CTGCATCAGG CTGCTCAAAC 000240
000241 CTGAATTTGA CAAAATTTCA AAGCGCTGTA TCTTTATGTT GATAAGACAA CGGATAAAGT GCCATACTTG GAACCTAGAT 000320
000321 CACTCAATGT TGCCTGTAGC TGAGTCCACT TCTGTCACTC ACCCTGCATT GCCCTGCCAG GAGCAAGGGA GAGAAAGCCA 000400
000401 GCCAGAAGGC ATGGGCATGG GCTCAAATCG GCTTCTCCTG TGGCCACTGT GAAAGTTGAT CATACAAAGG TCACTGTTGT 000480
000481 CATAGCCAAG CAGAGTTATG AGACCACAGG AAAAAGCACT TGGACCACGT AACATTGCTC CAAGAGTATA ACTGTCTCCA 000560
000561 ACCCTGGCTG CTGGAACAAG TGTTGCAACC TGAAACAGGT TTGATCTAAT AGCTACAGAA ACAACCTGCG GAAATCTAAG 000640
000641 ACTAGTTTCA CCCACTCACC AATCAGAGCT TGCCGGATCC CCAAAACGTT GCTAGTGCTA ATGAACTTGC TTTCCTAACA 000720
000721 ATCCATAACA TTTCTCATTT TTATGAAACC TACAACCTTC TCTTTGCTCT TTGGACATAC TGAAGACCAC CCAGTCTGTG 000800
000801 TGTATGCCCC AAACTGAAAT TCTTGCTCCC CAAATAAAAC ATTTTAAACT TAGAGATTTG TCTGTATATT TTATTTGACT 000880
000881 TTGACAACAC CAGGGGCTCC GGCACAAATC TCCTCCTTCA AGCCCTTTTC TACACAGTCC CGTGGGTCTA CCCTGAAAGA 000960
000961 AGCCTGATGA CGGCTCAAAG ACACAATGTT ACTGGGAGGT AAATTCAGGA TTACTTGACC GAATGGCCCA CCCGAGGTCA 001040
001041 CGGAGGCTGC TGGAGGAACA GAAAATGGTC TTCACCAAGT GAAGCATTGT CGGTCTTGGC CTGTGTCTGG CTGGAGAATG 001120
001121 TTAAAATTCT GGGGACACAA CAGAAAAGGC ACAGTTGTGG GGACCAGGCC AATGTCAGCG TGAGAACTGG CTCCATCCCC 001200
001201 CTCCCATGAA CCAGCTCTGC GGCCAAGGCA GGTCTGCATT TCCTGGTCTG TGACACGGAG TCAGTAACAT TGCCTACTTC 001280
001281 CCGGGGCTAT TTCCAGAGAA GTGAGGGAAT GGGTGTGGAA CGCCTGCCAT CTGCGGAGCC CCGCATGAAA CGTCTCTGTC 001360
001361 TTTCCAGCCA GCCCTGAGCC AGGGAAGGGA CTGGAAGCGC AGCGGGTGGC TGAGGCGGGC TTTCGGCAGC TTACCCCCAG 001440
001441 CCTTGCCCCT CCCCGCCTGC TGAAACACAA TCTATGGTTG TCGCCTTCCT GGAGATGTTA GCCGCCCCCT CCAGAGGTGG 001520
001521 TTCCAAATCT ACTTCTCATT TGGCTGATTT AGGAGAGGCT GCGAATCGGT CGCTATGGTT TCTTTATTTT CTCCTGACAG 001600
001601 CTTAGGAATC ATTTTTCCAA TTATTCCCAG GGGAGGAAAA AGAAGTGGAG GAAGCCAGTG TTTGGAATGA GGGGAAGCTC 001680
001681 ACGGATCTGA AATGCAACCT CTTCTGCAGG AGACCCGGCA CAGCTACCGG GACCCATCAC CTCCCTGTAG GAACCCCGCC 001760
001761 CAGCCCCCTC CAGCCAGCCC TGCGTGGTTG TGGCCCCACT GCAGAAACGC CTCCGCTTAA CACTCCAGCC TCTCTTCTAT 001840
001841 TCGGTCAGGC CACAGCTGCT GACTTTGTGC CTGCTGTAGC AACCCCGAGC CCCCAAATAA ACCCTCCCTC CCAGGGTGGC 001920
001921 CTCTCTACGG GGGGAGACAG ACGGTG
[back to top]

Predicted Small Protein

Name NONHSAT069067_smProtein_275:451
Length 59
Molecular weight 6582.5765
Aromaticity 0.0344827586207
Instability index 51.2672413793
Isoelectric point 6.81024169922
Runs 8
Runs residual 0.0186623721106
Runs probability 0.0
Amino acid sequence MLIRQRIKCHTWNLDHSMLPVAESTSVTHPALPCQEQGRESQPEGMGMGSNRLLLWPL
Secondary structure LLLHHHEELEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLL
PRMN -
PiMo -