Difference between revisions of "NONHSAT134366"
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sequence = <dnaseq>GCCTGGCTGGCATCATGCAGAGGACCTTCGCCTGGCTGTTGGACCGCGTGCAGCACCTGGGTGCCCCTGTCACCCTTCGCGCCTCTTATCTGGAGATCTACAATGAGCAGgTCTCAGCCGTCGAAGGAACTCAGCCCACACCCTGAACCAGGCCTCCAGCCGAAGCCATGCCCTGCTCACCCTTTACATCAGCCGTCAAACTGTCACTGCATCTCCCTGCTGCTGGACCCACAGCGGAAGCAGAGCCACATCCCTTTCCGGGACAGCAAGCTCACCAAGTTGCTGGCAGACTCACTGGGAGGGCGCGGGGTCACCCTCATGGTGGCCTGCGTGTCCCCCTCAGCCCAGTGCCTTCCTGAGACTCTCAGCACCCTGCGATATGCAAGCCGAGCTCAGCGGGTCACCACCCGACCACAGGCCCCCAAGTCTCCTGTGGCAAAGCAGCCCCAGCGTTTGGAGACAGAGATGCTGCAGCTCCAGGAGGAGAACCGTCGCCTGCAGTTCCAGCTGGACCAAATGGACTGCAAGGGAAAGAAAAGAGCCAGCTGCAGAATAGCCGAGACCTGGCCCAGAATGAGCAGCGCATCCTGGCCCAGCAGGTCCATGCACTAGAGAGGCGTCTCCTCTCTGCCTGCTACCATCACCAGCAGGGTCCTGGCCTGACCCCACCGTGTCCCTGCTTGATGGCCCCAGCTCCCCCTTGCCATGCACTGCCACCCCTCTACTCCTGCCCCT</dnaseq>| | sequence = <dnaseq>GCCTGGCTGGCATCATGCAGAGGACCTTCGCCTGGCTGTTGGACCGCGTGCAGCACCTGGGTGCCCCTGTCACCCTTCGCGCCTCTTATCTGGAGATCTACAATGAGCAGgTCTCAGCCGTCGAAGGAACTCAGCCCACACCCTGAACCAGGCCTCCAGCCGAAGCCATGCCCTGCTCACCCTTTACATCAGCCGTCAAACTGTCACTGCATCTCCCTGCTGCTGGACCCACAGCGGAAGCAGAGCCACATCCCTTTCCGGGACAGCAAGCTCACCAAGTTGCTGGCAGACTCACTGGGAGGGCGCGGGGTCACCCTCATGGTGGCCTGCGTGTCCCCCTCAGCCCAGTGCCTTCCTGAGACTCTCAGCACCCTGCGATATGCAAGCCGAGCTCAGCGGGTCACCACCCGACCACAGGCCCCCAAGTCTCCTGTGGCAAAGCAGCCCCAGCGTTTGGAGACAGAGATGCTGCAGCTCCAGGAGGAGAACCGTCGCCTGCAGTTCCAGCTGGACCAAATGGACTGCAAGGGAAAGAAAAGAGCCAGCTGCAGAATAGCCGAGACCTGGCCCAGAATGAGCAGCGCATCCTGGCCCAGCAGGTCCATGCACTAGAGAGGCGTCTCCTCTCTGCCTGCTACCATCACCAGCAGGGTCCTGGCCTGACCCCACCGTGTCCCTGCTTGATGGCCCCAGCTCCCCCTTGCCATGCACTGCCACCCCTCTACTCCTGCCCCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG053256]] | + | [[Category:Sense]][[Category:NONHSAG053256]][[Category:Transcripts]] |
Latest revision as of 02:33, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT134366 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
735 nt |
Genomic location |
chr9-:116855586..116859996 |
Exon number |
8 |
Exons |
116855586..116855613,116855687..116855777,116856166..116856252,116856633..116856735,116857303..116857407,116857494..116857612,116858667..116858758,116859887..116859996 |
Genome context |
|
Sequence |
000001 GCCTGGCTGG CATCATGCAG AGGACCTTCG CCTGGCTGTT GGACCGCGTG CAGCACCTGG GTGCCCCTGT CACCCTTCGC 000080
000081 GCCTCTTATC TGGAGATCTA CAATGAGCAG gTCTCAGCCG TCGAAGGAAC TCAGCCCACA CCCTGAACCA GGCCTCCAGC 000160 000161 CGAAGCCATG CCCTGCTCAC CCTTTACATC AGCCGTCAAA CTGTCACTGC ATCTCCCTGC TGCTGGACCC ACAGCGGAAG 000240 000241 CAGAGCCACA TCCCTTTCCG GGACAGCAAG CTCACCAAGT TGCTGGCAGA CTCACTGGGA GGGCGCGGGG TCACCCTCAT 000320 000321 GGTGGCCTGC GTGTCCCCCT CAGCCCAGTG CCTTCCTGAG ACTCTCAGCA CCCTGCGATA TGCAAGCCGA GCTCAGCGGG 000400 000401 TCACCACCCG ACCACAGGCC CCCAAGTCTC CTGTGGCAAA GCAGCCCCAG CGTTTGGAGA CAGAGATGCT GCAGCTCCAG 000480 000481 GAGGAGAACC GTCGCCTGCA GTTCCAGCTG GACCAAATGG ACTGCAAGGG AAAGAAAAGA GCCAGCTGCA GAATAGCCGA 000560 000561 GACCTGGCCC AGAATGAGCA GCGCATCCTG GCCCAGCAGG TCCATGCACT AGAGAGGCGT CTCCTCTCTG CCTGCTACCA 000640 000641 TCACCAGCAG GGTCCTGGCC TGACCCCACC GTGTCCCTGC TTGATGGCCC CAGCTCCCCC TTGCCATGCA CTGCCACCCC 000720 000721 TCTACTCCTG CCCCT |
Predicted Small Protein
Name | NONHSAT134366_smProtein_167:358 |
Length | 64 |
Molecular weight | 6478.3463 |
Aromaticity | 0.031746031746 |
Instability index | 58.6079365079 |
Isoelectric point | 10.6940307617 |
Runs | 7 |
Runs residual | 0.0338516358925 |
Runs probability | 0.0493855199737 |
Amino acid sequence | MPCSPFTSAVKLSLHLPAAGPTAEAEPHPFPGQQAHQVAGRLTGRARGHPHGGLRVPLSP VPS |
Secondary structure | LLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLEEEELLL LLL |
PRMN | - |
PiMo | - |