Difference between revisions of "NONHSAT016710"
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sequence = <dnaseq>GGGTGAGGCGGAGAGACAGAGCGGGAAGGGAAACAGGATGGGGAGAGTCAAGAGGGGAAGGGAAGCGGGAGTCGGGGTGCGAGCCTGCCCTTTCCCCCGCCGAGGGCCTGTgcggggcgcggcggccgcgccAACTCCGGCGTCGGGAACACTCACCGCAGGACGCTTTGCCCTCCTTGGAATCGCAGTAGCCGCAGTGGTAGCCGGCCCTGAGGCCCTTGTATTCCACCACCGACGCCATGGCCGCCGCGAGGGTCCGCTCGGGCCGACCACGCCTCTTGGCGCCCGGGGCCGACCTCGGCGAAGCGCTGGGGCCCGCGGCGGGAGGGGTGGAGAGCGAAGCCTGGCGCGGGGACCCGTGGGCGGGGATGGTGGTCGTGTCCCCAAGCCCTGCGTTTGGGCCGGTGCTTCCCACAGCTGTGCGttatcagccccatttcacaggtaaggaaactgaggaccggaggttgtgattatcccaaagtcaTTCCCGGCGGGTCTCGGATTGAAAGTCAGGCCGCCCCTGGCCACCGTGTAAGTGACTTGCTGGAGCTGCTTCCAGACCAGCTGGCACGCACTCCAGTGCCCTGAATACAAGAACACAAGCAGaactagagatgtctcattgggctacatgatgactttggatgaatgcagcttgcatacatggtagagagtatcttg</dnaseq>| | sequence = <dnaseq>GGGTGAGGCGGAGAGACAGAGCGGGAAGGGAAACAGGATGGGGAGAGTCAAGAGGGGAAGGGAAGCGGGAGTCGGGGTGCGAGCCTGCCCTTTCCCCCGCCGAGGGCCTGTgcggggcgcggcggccgcgccAACTCCGGCGTCGGGAACACTCACCGCAGGACGCTTTGCCCTCCTTGGAATCGCAGTAGCCGCAGTGGTAGCCGGCCCTGAGGCCCTTGTATTCCACCACCGACGCCATGGCCGCCGCGAGGGTCCGCTCGGGCCGACCACGCCTCTTGGCGCCCGGGGCCGACCTCGGCGAAGCGCTGGGGCCCGCGGCGGGAGGGGTGGAGAGCGAAGCCTGGCGCGGGGACCCGTGGGCGGGGATGGTGGTCGTGTCCCCAAGCCCTGCGTTTGGGCCGGTGCTTCCCACAGCTGTGCGttatcagccccatttcacaggtaaggaaactgaggaccggaggttgtgattatcccaaagtcaTTCCCGGCGGGTCTCGGATTGAAAGTCAGGCCGCCCCTGGCCACCGTGTAAGTGACTTGCTGGAGCTGCTTCCAGACCAGCTGGCACGCACTCCAGTGCCCTGAATACAAGAACACAAGCAGaactagagatgtctcattgggctacatgatgactttggatgaatgcagcttgcatacatggtagagagtatcttg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG007058]] | + | [[Category:Intergenic]][[Category:NONHSAG007058]][[Category:Transcripts]] |
Latest revision as of 20:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT016710 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
684 nt |
| Genomic location |
chr10+:123687706..123706513 |
| Exon number |
2 |
| Exons |
123687706..123688314,123706439..123706513 |
| Genome context |
|
| Sequence |
000001 GGGTGAGGCG GAGAGACAGA GCGGGAAGGG AAACAGGATG GGGAGAGTCA AGAGGGGAAG GGAAGCGGGA GTCGGGGTGC 000080
000081 GAGCCTGCCC TTTCCCCCGC CGAGGGCCTG Tgcggggcgc ggcggccgcg ccAACTCCGG CGTCGGGAAC ACTCACCGCA 000160 000161 GGACGCTTTG CCCTCCTTGG AATCGCAGTA GCCGCAGTGG TAGCCGGCCC TGAGGCCCTT GTATTCCACC ACCGACGCCA 000240 000241 TGGCCGCCGC GAGGGTCCGC TCGGGCCGAC CACGCCTCTT GGCGCCCGGG GCCGACCTCG GCGAAGCGCT GGGGCCCGCG 000320 000321 GCGGGAGGGG TGGAGAGCGA AGCCTGGCGC GGGGACCCGT GGGCGGGGAT GGTGGTCGTG TCCCCAAGCC CTGCGTTTGG 000400 000401 GCCGGTGCTT CCCACAGCTG TGCGttatca gccccatttc acaggtaagg aaactgagga ccggaggttg tgattatccc 000480 000481 aaagtcaTTC CCGGCGGGTC TCGGATTGAA AGTCAGGCCG CCCCTGGCCA CCGTGTAAGT GACTTGCTGG AGCTGCTTCC 000560 000561 AGACCAGCTG GCACGCACTC CAGTGCCCTG AATACAAGAA CACAAGCAGa actagagatg tctcattggg ctacatgatg 000640 000641 actttggatg aatgcagctt gcatacatgg tagagagtat cttg |
Predicted Small Protein
| Name | NONHSAT016710_smProtein_239:472 |
| Length | 78 |
| Molecular weight | 8066.0746 |
| Aromaticity | 0.0649350649351 |
| Instability index | 54.5467532468 |
| Isoelectric point | 8.36065673828 |
| Runs | 11 |
| Runs residual | 0.00677583286279 |
| Runs probability | 0.0317322670264 |
| Amino acid sequence | MAAARVRSGRPRLLAPGADLGEALGPAAGGVESEAWRGDPWAGMVVVSPSPAFGPVLPTA VRYQPHFTGKETEDRRL |
| Secondary structure | LLLEEELLLLLEELLLLLLHHHHLLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLL EEELLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
