Difference between revisions of "NONHSAT071553"
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sequence = <dnaseq>GGCGGCCGCAGGNAATTTTTTTTTTTTTTTTTTTTGCATTTAACATTTTATTGAGATTCTCAACAGCTGCCATTTGGTTTGTATAGCAAATTTTTTACAAAGTAACTTTTTTCCATTTTTGATATTTTTATGAAAATTATTTTCTTCAGTTTTAAAGCCCTGTCCCTCCCCCAAAGAAGGATTAATAACTACCAAGTAAGGATTATTTAGGAGAAAAACAAAAGCAAAACAGCTTTATAAACACTTGTGAAACAGGGGTAAGTGTCCGAAGTCAAGACCTTCTGGGCCCAGTGGAGGTGCTGGGCTGCTCCAGGACAACCCATCACCACTTCACCATCCACAACATCCTCAAGAGCTGAGCAGCCCTGCACAGGACCCTGGGGGGCTTCCGTGTTCCACAAGCTCCACGTCCCGTTTTTCCGTCTCCATCTTTGCTGTTGGGCCTTCCCCTCCCAAATCTGCCTAACAAAGGCAGCACGATCTTTAATACCTTGTGCAGCTTTGTAAATGGAGCCMGGATACTCTATTTTGAAAGTTGAGATTCCCTATCCCGTCTGGGGGAGGAAAAATTATCCCAATGTAGCATGGATGGTTTCACTTTCTTGTCCCACTCAGACACATGCTCATACTTATTAAATGGATTTATTGGATGCTTCAAAAGTCCTGATGTGTAGTAGCACAAAGTTCCTTGTAAAAAAAGAAGTTGCAAAATTATAAAAATTTCTGCAGCAGTTCTGGCTCTGGATGACAAAGCTCATTCTGATTAGTAGTTTTTTTGACATGCACAGCAGCTTCCCCTATAAGTCCTACGTTCGGAGGGTTCCGTTTAGACAACAGGAAGTTGGAATCCAAGTTTAAAAAGCTCTCTGCTGACAAAATGTGGTACATCCATCAACAGAATTCTACTCAGCAATAAAAGGAACAAACTACCAAGACGTTATCTGTCATGGACAAACCTCAAAAACATTAGCTAAGTAAAAAAGCCAGACCCAAGGGACCACATATTGTATGATTCCATTGATTTGAACTGTCCAGAAAGGGCAAATTTATAGAGAAAGTAGATTAGTGGTTGCTGGGGGTAAGAACAGGATTAACTGTAAAAGAGCATGAAGGATCTTATTGGGAGGGATAAAAATGTTCTAAAACTGAGTAATAGTTACAGCTACACCACTGAGGGAAGTTACTAAAATCACTGAAATGTACACTTGAAATGGGTGTTTTATGATATGTAACATATGCCTCATTAAAGTTGTTTTAAGAAAAGGATTCCCTGCCTCCCAAACCATCCTTCAAGCATTAAACATTTTTGGAGGCTCATAATCAACAGGACAGAATAACTACTTAGTGATGATTTACAGAGTGAAATATTTTACTGTTTTGTAGTAAGCACATTTTAGTAACTGTACACTAGTACAATGTTTTTAAGATTTTATCTCATTTTTGTCATATTAGCCTAAAATGTTTATTTTTATTTAAAAAGTAGCCAATAGGAAGGTAAGATTGGGGAGAAAGGTCAGTAAATGTCACAAAAGAGACTCCTAGTAACACAATCTGAGGGAGCTTTTTCTTTTGAAATAAAGATGGTGCATCTGTCCCTTTACAGATTTCTCTCCTGTCCCCTGGGACTGGGGAAGGTGAATCTCCTGCCTGACACCTTGTAGAGATTAGTGTATCCAGCTATTCTATTGCCACCTCNTGCCAAGCTTGGGCGT</dnaseq>| | sequence = <dnaseq>GGCGGCCGCAGGNAATTTTTTTTTTTTTTTTTTTTGCATTTAACATTTTATTGAGATTCTCAACAGCTGCCATTTGGTTTGTATAGCAAATTTTTTACAAAGTAACTTTTTTCCATTTTTGATATTTTTATGAAAATTATTTTCTTCAGTTTTAAAGCCCTGTCCCTCCCCCAAAGAAGGATTAATAACTACCAAGTAAGGATTATTTAGGAGAAAAACAAAAGCAAAACAGCTTTATAAACACTTGTGAAACAGGGGTAAGTGTCCGAAGTCAAGACCTTCTGGGCCCAGTGGAGGTGCTGGGCTGCTCCAGGACAACCCATCACCACTTCACCATCCACAACATCCTCAAGAGCTGAGCAGCCCTGCACAGGACCCTGGGGGGCTTCCGTGTTCCACAAGCTCCACGTCCCGTTTTTCCGTCTCCATCTTTGCTGTTGGGCCTTCCCCTCCCAAATCTGCCTAACAAAGGCAGCACGATCTTTAATACCTTGTGCAGCTTTGTAAATGGAGCCMGGATACTCTATTTTGAAAGTTGAGATTCCCTATCCCGTCTGGGGGAGGAAAAATTATCCCAATGTAGCATGGATGGTTTCACTTTCTTGTCCCACTCAGACACATGCTCATACTTATTAAATGGATTTATTGGATGCTTCAAAAGTCCTGATGTGTAGTAGCACAAAGTTCCTTGTAAAAAAAGAAGTTGCAAAATTATAAAAATTTCTGCAGCAGTTCTGGCTCTGGATGACAAAGCTCATTCTGATTAGTAGTTTTTTTGACATGCACAGCAGCTTCCCCTATAAGTCCTACGTTCGGAGGGTTCCGTTTAGACAACAGGAAGTTGGAATCCAAGTTTAAAAAGCTCTCTGCTGACAAAATGTGGTACATCCATCAACAGAATTCTACTCAGCAATAAAAGGAACAAACTACCAAGACGTTATCTGTCATGGACAAACCTCAAAAACATTAGCTAAGTAAAAAAGCCAGACCCAAGGGACCACATATTGTATGATTCCATTGATTTGAACTGTCCAGAAAGGGCAAATTTATAGAGAAAGTAGATTAGTGGTTGCTGGGGGTAAGAACAGGATTAACTGTAAAAGAGCATGAAGGATCTTATTGGGAGGGATAAAAATGTTCTAAAACTGAGTAATAGTTACAGCTACACCACTGAGGGAAGTTACTAAAATCACTGAAATGTACACTTGAAATGGGTGTTTTATGATATGTAACATATGCCTCATTAAAGTTGTTTTAAGAAAAGGATTCCCTGCCTCCCAAACCATCCTTCAAGCATTAAACATTTTTGGAGGCTCATAATCAACAGGACAGAATAACTACTTAGTGATGATTTACAGAGTGAAATATTTTACTGTTTTGTAGTAAGCACATTTTAGTAACTGTACACTAGTACAATGTTTTTAAGATTTTATCTCATTTTTGTCATATTAGCCTAAAATGTTTATTTTTATTTAAAAAGTAGCCAATAGGAAGGTAAGATTGGGGAGAAAGGTCAGTAAATGTCACAAAAGAGACTCCTAGTAACACAATCTGAGGGAGCTTTTTCTTTTGAAATAAAGATGGTGCATCTGTCCCTTTACAGATTTCTCTCCTGTCCCCTGGGACTGGGGAAGGTGAATCTCCTGCCTGACACCTTGTAGAGATTAGTGTATCCAGCTATTCTATTGCCACCTCNTGCCAAGCTTGGGCGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:NONHSAG028145]] | + | [[Category:Antisense]][[Category:NONHSAG028145]][[Category:Transcripts]] |
Revision as of 11:44, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT071553 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1712 nt |
Genomic location |
chr2+:71409868..71411508 |
Exon number |
2 |
Exons |
71409868..71410038,71410046..71411508 |
Genome context |
|
Sequence |
000001 GGCGGCCGCA GGNAATTTTT TTTTTTTTTT TTTTTGCATT TAACATTTTA TTGAGATTCT CAACAGCTGC CATTTGGTTT 000080
000081 GTATAGCAAA TTTTTTACAA AGTAACTTTT TTCCATTTTT GATATTTTTA TGAAAATTAT TTTCTTCAGT TTTAAAGCCC 000160 000161 TGTCCCTCCC CCAAAGAAGG ATTAATAACT ACCAAGTAAG GATTATTTAG GAGAAAAACA AAAGCAAAAC AGCTTTATAA 000240 000241 ACACTTGTGA AACAGGGGTA AGTGTCCGAA GTCAAGACCT TCTGGGCCCA GTGGAGGTGC TGGGCTGCTC CAGGACAACC 000320 000321 CATCACCACT TCACCATCCA CAACATCCTC AAGAGCTGAG CAGCCCTGCA CAGGACCCTG GGGGGCTTCC GTGTTCCACA 000400 000401 AGCTCCACGT CCCGTTTTTC CGTCTCCATC TTTGCTGTTG GGCCTTCCCC TCCCAAATCT GCCTAACAAA GGCAGCACGA 000480 000481 TCTTTAATAC CTTGTGCAGC TTTGTAAATG GAGCCMGGAT ACTCTATTTT GAAAGTTGAG ATTCCCTATC CCGTCTGGGG 000560 000561 GAGGAAAAAT TATCCCAATG TAGCATGGAT GGTTTCACTT TCTTGTCCCA CTCAGACACA TGCTCATACT TATTAAATGG 000640 000641 ATTTATTGGA TGCTTCAAAA GTCCTGATGT GTAGTAGCAC AAAGTTCCTT GTAAAAAAAG AAGTTGCAAA ATTATAAAAA 000720 000721 TTTCTGCAGC AGTTCTGGCT CTGGATGACA AAGCTCATTC TGATTAGTAG TTTTTTTGAC ATGCACAGCA GCTTCCCCTA 000800 000801 TAAGTCCTAC GTTCGGAGGG TTCCGTTTAG ACAACAGGAA GTTGGAATCC AAGTTTAAAA AGCTCTCTGC TGACAAAATG 000880 000881 TGGTACATCC ATCAACAGAA TTCTACTCAG CAATAAAAGG AACAAACTAC CAAGACGTTA TCTGTCATGG ACAAACCTCA 000960 000961 AAAACATTAG CTAAGTAAAA AAGCCAGACC CAAGGGACCA CATATTGTAT GATTCCATTG ATTTGAACTG TCCAGAAAGG 001040 001041 GCAAATTTAT AGAGAAAGTA GATTAGTGGT TGCTGGGGGT AAGAACAGGA TTAACTGTAA AAGAGCATGA AGGATCTTAT 001120 001121 TGGGAGGGAT AAAAATGTTC TAAAACTGAG TAATAGTTAC AGCTACACCA CTGAGGGAAG TTACTAAAAT CACTGAAATG 001200 001201 TACACTTGAA ATGGGTGTTT TATGATATGT AACATATGCC TCATTAAAGT TGTTTTAAGA AAAGGATTCC CTGCCTCCCA 001280 001281 AACCATCCTT CAAGCATTAA ACATTTTTGG AGGCTCATAA TCAACAGGAC AGAATAACTA CTTAGTGATG ATTTACAGAG 001360 001361 TGAAATATTT TACTGTTTTG TAGTAAGCAC ATTTTAGTAA CTGTACACTA GTACAATGTT TTTAAGATTT TATCTCATTT 001440 001441 TTGTCATATT AGCCTAAAAT GTTTATTTTT ATTTAAAAAG TAGCCAATAG GAAGGTAAGA TTGGGGAGAA AGGTCAGTAA 001520 001521 ATGTCACAAA AGAGACTCCT AGTAACACAA TCTGAGGGAG CTTTTTCTTT TGAAATAAAG ATGGTGCATC TGTCCCTTTA 001600 001601 CAGATTTCTC TCCTGTCCCC TGGGACTGGG GAAGGTGAAT CTCCTGCCTG ACACCTTGTA GAGATTAGTG TATCCAGCTA 001680 001681 TTCTATTGCC ACCTCNTGCC AAGCTTGGGC GT |
Predicted Small Protein
Name | NONHSAT071553_smProtein_1520:1660 |
Length | 47 |
Molecular weight | 5182.1319 |
Aromaticity | 0.0869565217391 |
Instability index | 51.6326086957 |
Isoelectric point | 9.10101318359 |
Runs | 6 |
Runs residual | 0.0309265010352 |
Runs probability | 0.0499322852265 |
Amino acid sequence | MSQKRLLVTQSEGAFSFEIKMVHLSLYRFLSCPLGLGKVNLLPDTL |
Secondary structure | LLLEEEEEELLLLLEEEEEEHHHHHHHHHHLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |