Difference between revisions of "NONHSAT071553"

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sequence = <dnaseq>GGCGGCCGCAGGNAATTTTTTTTTTTTTTTTTTTTGCATTTAACATTTTATTGAGATTCTCAACAGCTGCCATTTGGTTTGTATAGCAAATTTTTTACAAAGTAACTTTTTTCCATTTTTGATATTTTTATGAAAATTATTTTCTTCAGTTTTAAAGCCCTGTCCCTCCCCCAAAGAAGGATTAATAACTACCAAGTAAGGATTATTTAGGAGAAAAACAAAAGCAAAACAGCTTTATAAACACTTGTGAAACAGGGGTAAGTGTCCGAAGTCAAGACCTTCTGGGCCCAGTGGAGGTGCTGGGCTGCTCCAGGACAACCCATCACCACTTCACCATCCACAACATCCTCAAGAGCTGAGCAGCCCTGCACAGGACCCTGGGGGGCTTCCGTGTTCCACAAGCTCCACGTCCCGTTTTTCCGTCTCCATCTTTGCTGTTGGGCCTTCCCCTCCCAAATCTGCCTAACAAAGGCAGCACGATCTTTAATACCTTGTGCAGCTTTGTAAATGGAGCCMGGATACTCTATTTTGAAAGTTGAGATTCCCTATCCCGTCTGGGGGAGGAAAAATTATCCCAATGTAGCATGGATGGTTTCACTTTCTTGTCCCACTCAGACACATGCTCATACTTATTAAATGGATTTATTGGATGCTTCAAAAGTCCTGATGTGTAGTAGCACAAAGTTCCTTGTAAAAAAAGAAGTTGCAAAATTATAAAAATTTCTGCAGCAGTTCTGGCTCTGGATGACAAAGCTCATTCTGATTAGTAGTTTTTTTGACATGCACAGCAGCTTCCCCTATAAGTCCTACGTTCGGAGGGTTCCGTTTAGACAACAGGAAGTTGGAATCCAAGTTTAAAAAGCTCTCTGCTGACAAAATGTGGTACATCCATCAACAGAATTCTACTCAGCAATAAAAGGAACAAACTACCAAGACGTTATCTGTCATGGACAAACCTCAAAAACATTAGCTAAGTAAAAAAGCCAGACCCAAGGGACCACATATTGTATGATTCCATTGATTTGAACTGTCCAGAAAGGGCAAATTTATAGAGAAAGTAGATTAGTGGTTGCTGGGGGTAAGAACAGGATTAACTGTAAAAGAGCATGAAGGATCTTATTGGGAGGGATAAAAATGTTCTAAAACTGAGTAATAGTTACAGCTACACCACTGAGGGAAGTTACTAAAATCACTGAAATGTACACTTGAAATGGGTGTTTTATGATATGTAACATATGCCTCATTAAAGTTGTTTTAAGAAAAGGATTCCCTGCCTCCCAAACCATCCTTCAAGCATTAAACATTTTTGGAGGCTCATAATCAACAGGACAGAATAACTACTTAGTGATGATTTACAGAGTGAAATATTTTACTGTTTTGTAGTAAGCACATTTTAGTAACTGTACACTAGTACAATGTTTTTAAGATTTTATCTCATTTTTGTCATATTAGCCTAAAATGTTTATTTTTATTTAAAAAGTAGCCAATAGGAAGGTAAGATTGGGGAGAAAGGTCAGTAAATGTCACAAAAGAGACTCCTAGTAACACAATCTGAGGGAGCTTTTTCTTTTGAAATAAAGATGGTGCATCTGTCCCTTTACAGATTTCTCTCCTGTCCCCTGGGACTGGGGAAGGTGAATCTCCTGCCTGACACCTTGTAGAGATTAGTGTATCCAGCTATTCTATTGCCACCTCNTGCCAAGCTTGGGCGT</dnaseq>|
 
sequence = <dnaseq>GGCGGCCGCAGGNAATTTTTTTTTTTTTTTTTTTTGCATTTAACATTTTATTGAGATTCTCAACAGCTGCCATTTGGTTTGTATAGCAAATTTTTTACAAAGTAACTTTTTTCCATTTTTGATATTTTTATGAAAATTATTTTCTTCAGTTTTAAAGCCCTGTCCCTCCCCCAAAGAAGGATTAATAACTACCAAGTAAGGATTATTTAGGAGAAAAACAAAAGCAAAACAGCTTTATAAACACTTGTGAAACAGGGGTAAGTGTCCGAAGTCAAGACCTTCTGGGCCCAGTGGAGGTGCTGGGCTGCTCCAGGACAACCCATCACCACTTCACCATCCACAACATCCTCAAGAGCTGAGCAGCCCTGCACAGGACCCTGGGGGGCTTCCGTGTTCCACAAGCTCCACGTCCCGTTTTTCCGTCTCCATCTTTGCTGTTGGGCCTTCCCCTCCCAAATCTGCCTAACAAAGGCAGCACGATCTTTAATACCTTGTGCAGCTTTGTAAATGGAGCCMGGATACTCTATTTTGAAAGTTGAGATTCCCTATCCCGTCTGGGGGAGGAAAAATTATCCCAATGTAGCATGGATGGTTTCACTTTCTTGTCCCACTCAGACACATGCTCATACTTATTAAATGGATTTATTGGATGCTTCAAAAGTCCTGATGTGTAGTAGCACAAAGTTCCTTGTAAAAAAAGAAGTTGCAAAATTATAAAAATTTCTGCAGCAGTTCTGGCTCTGGATGACAAAGCTCATTCTGATTAGTAGTTTTTTTGACATGCACAGCAGCTTCCCCTATAAGTCCTACGTTCGGAGGGTTCCGTTTAGACAACAGGAAGTTGGAATCCAAGTTTAAAAAGCTCTCTGCTGACAAAATGTGGTACATCCATCAACAGAATTCTACTCAGCAATAAAAGGAACAAACTACCAAGACGTTATCTGTCATGGACAAACCTCAAAAACATTAGCTAAGTAAAAAAGCCAGACCCAAGGGACCACATATTGTATGATTCCATTGATTTGAACTGTCCAGAAAGGGCAAATTTATAGAGAAAGTAGATTAGTGGTTGCTGGGGGTAAGAACAGGATTAACTGTAAAAGAGCATGAAGGATCTTATTGGGAGGGATAAAAATGTTCTAAAACTGAGTAATAGTTACAGCTACACCACTGAGGGAAGTTACTAAAATCACTGAAATGTACACTTGAAATGGGTGTTTTATGATATGTAACATATGCCTCATTAAAGTTGTTTTAAGAAAAGGATTCCCTGCCTCCCAAACCATCCTTCAAGCATTAAACATTTTTGGAGGCTCATAATCAACAGGACAGAATAACTACTTAGTGATGATTTACAGAGTGAAATATTTTACTGTTTTGTAGTAAGCACATTTTAGTAACTGTACACTAGTACAATGTTTTTAAGATTTTATCTCATTTTTGTCATATTAGCCTAAAATGTTTATTTTTATTTAAAAAGTAGCCAATAGGAAGGTAAGATTGGGGAGAAAGGTCAGTAAATGTCACAAAAGAGACTCCTAGTAACACAATCTGAGGGAGCTTTTTCTTTTGAAATAAAGATGGTGCATCTGTCCCTTTACAGATTTCTCTCCTGTCCCCTGGGACTGGGGAAGGTGAATCTCCTGCCTGACACCTTGTAGAGATTAGTGTATCCAGCTATTCTATTGCCACCTCNTGCCAAGCTTGGGCGT</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG028145]]
+
[[Category:Antisense]][[Category:NONHSAG028145]][[Category:Transcripts]]

Revision as of 11:44, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT071553

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1712 nt

Genomic location

chr2+:71409868..71411508

Exon number

2

Exons

71409868..71410038,71410046..71411508

Genome context

Sequence
000001 GGCGGCCGCA GGNAATTTTT TTTTTTTTTT TTTTTGCATT TAACATTTTA TTGAGATTCT CAACAGCTGC CATTTGGTTT 000080
000081 GTATAGCAAA TTTTTTACAA AGTAACTTTT TTCCATTTTT GATATTTTTA TGAAAATTAT TTTCTTCAGT TTTAAAGCCC 000160
000161 TGTCCCTCCC CCAAAGAAGG ATTAATAACT ACCAAGTAAG GATTATTTAG GAGAAAAACA AAAGCAAAAC AGCTTTATAA 000240
000241 ACACTTGTGA AACAGGGGTA AGTGTCCGAA GTCAAGACCT TCTGGGCCCA GTGGAGGTGC TGGGCTGCTC CAGGACAACC 000320
000321 CATCACCACT TCACCATCCA CAACATCCTC AAGAGCTGAG CAGCCCTGCA CAGGACCCTG GGGGGCTTCC GTGTTCCACA 000400
000401 AGCTCCACGT CCCGTTTTTC CGTCTCCATC TTTGCTGTTG GGCCTTCCCC TCCCAAATCT GCCTAACAAA GGCAGCACGA 000480
000481 TCTTTAATAC CTTGTGCAGC TTTGTAAATG GAGCCMGGAT ACTCTATTTT GAAAGTTGAG ATTCCCTATC CCGTCTGGGG 000560
000561 GAGGAAAAAT TATCCCAATG TAGCATGGAT GGTTTCACTT TCTTGTCCCA CTCAGACACA TGCTCATACT TATTAAATGG 000640
000641 ATTTATTGGA TGCTTCAAAA GTCCTGATGT GTAGTAGCAC AAAGTTCCTT GTAAAAAAAG AAGTTGCAAA ATTATAAAAA 000720
000721 TTTCTGCAGC AGTTCTGGCT CTGGATGACA AAGCTCATTC TGATTAGTAG TTTTTTTGAC ATGCACAGCA GCTTCCCCTA 000800
000801 TAAGTCCTAC GTTCGGAGGG TTCCGTTTAG ACAACAGGAA GTTGGAATCC AAGTTTAAAA AGCTCTCTGC TGACAAAATG 000880
000881 TGGTACATCC ATCAACAGAA TTCTACTCAG CAATAAAAGG AACAAACTAC CAAGACGTTA TCTGTCATGG ACAAACCTCA 000960
000961 AAAACATTAG CTAAGTAAAA AAGCCAGACC CAAGGGACCA CATATTGTAT GATTCCATTG ATTTGAACTG TCCAGAAAGG 001040
001041 GCAAATTTAT AGAGAAAGTA GATTAGTGGT TGCTGGGGGT AAGAACAGGA TTAACTGTAA AAGAGCATGA AGGATCTTAT 001120
001121 TGGGAGGGAT AAAAATGTTC TAAAACTGAG TAATAGTTAC AGCTACACCA CTGAGGGAAG TTACTAAAAT CACTGAAATG 001200
001201 TACACTTGAA ATGGGTGTTT TATGATATGT AACATATGCC TCATTAAAGT TGTTTTAAGA AAAGGATTCC CTGCCTCCCA 001280
001281 AACCATCCTT CAAGCATTAA ACATTTTTGG AGGCTCATAA TCAACAGGAC AGAATAACTA CTTAGTGATG ATTTACAGAG 001360
001361 TGAAATATTT TACTGTTTTG TAGTAAGCAC ATTTTAGTAA CTGTACACTA GTACAATGTT TTTAAGATTT TATCTCATTT 001440
001441 TTGTCATATT AGCCTAAAAT GTTTATTTTT ATTTAAAAAG TAGCCAATAG GAAGGTAAGA TTGGGGAGAA AGGTCAGTAA 001520
001521 ATGTCACAAA AGAGACTCCT AGTAACACAA TCTGAGGGAG CTTTTTCTTT TGAAATAAAG ATGGTGCATC TGTCCCTTTA 001600
001601 CAGATTTCTC TCCTGTCCCC TGGGACTGGG GAAGGTGAAT CTCCTGCCTG ACACCTTGTA GAGATTAGTG TATCCAGCTA 001680
001681 TTCTATTGCC ACCTCNTGCC AAGCTTGGGC GT
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Predicted Small Protein

Name NONHSAT071553_smProtein_1520:1660
Length 47
Molecular weight 5182.1319
Aromaticity 0.0869565217391
Instability index 51.6326086957
Isoelectric point 9.10101318359
Runs 6
Runs residual 0.0309265010352
Runs probability 0.0499322852265
Amino acid sequence MSQKRLLVTQSEGAFSFEIKMVHLSLYRFLSCPLGLGKVNLLPDTL
Secondary structure LLLEEEEEELLLLLEEEEEEHHHHHHHHHHLLLLLLLLLLLLLLLL
PRMN -
PiMo -