Difference between revisions of "NONHSAT093949"
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sequence = <dnaseq>GATCCAGGTCTCCGGGGTCCGCTTTGGCCAGAGGCGCGGAAGGAAGCAGTGCCCGGCGACACTGCACCCATCCCGGCTGCTTTTGCTGCGCCCTCTCAGCTTCCCAAGAAAGgcatcgtcatgtgatcatcacctaagaactagaacatcagcaggccctagaagcctcactcttgcccctccctttaatatctcaaagGATGACACTTCTGTGGTGTGTAGTGAGTCTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGGTAAGTGAATGGCTTTTGACAATGTATTAAAATGCAAGTCATGCGTAGGGTAATGAGTCCACTCTTCCTGAAAATGAATTTAAATAAACATAATGTTATTCATGTCCATTGTCTTCTGCGGTAGCAAATAATCATAAAGCAGAATAATAGAATTTTGATGATGG</dnaseq>| | sequence = <dnaseq>GATCCAGGTCTCCGGGGTCCGCTTTGGCCAGAGGCGCGGAAGGAAGCAGTGCCCGGCGACACTGCACCCATCCCGGCTGCTTTTGCTGCGCCCTCTCAGCTTCCCAAGAAAGgcatcgtcatgtgatcatcacctaagaactagaacatcagcaggccctagaagcctcactcttgcccctccctttaatatctcaaagGATGACACTTCTGTGGTGTGTAGTGAGTCTCTACTTTTATGGAATCCTGCAAAGTGATGCCTCAGGTAAGTGAATGGCTTTTGACAATGTATTAAAATGCAAGTCATGCGTAGGGTAATGAGTCCACTCTTCCTGAAAATGAATTTAAATAAACATAATGTTATTCATGTCCATTGTCTTCTGCGGTAGCAAATAATCATAAAGCAGAATAATAGAATTTTGATGATGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG036966]] | + | [[Category:Sense]][[Category:NONHSAG036966]][[Category:Transcripts]] |
Latest revision as of 00:49, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT093949 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
428 nt |
| Genomic location |
chr3+:190231897..190282306 |
| Exon number |
3 |
| Exons |
190231897..190232008,190273919..190274005,190282078..190282306 |
| Genome context |
|
| Sequence |
000001 GATCCAGGTC TCCGGGGTCC GCTTTGGCCA GAGGCGCGGA AGGAAGCAGT GCCCGGCGAC ACTGCACCCA TCCCGGCTGC 000080
000081 TTTTGCTGCG CCCTCTCAGC TTCCCAAGAA AGgcatcgtc atgtgatcat cacctaagaa ctagaacatc agcaggccct 000160 000161 agaagcctca ctcttgcccc tccctttaat atctcaaagG ATGACACTTC TGTGGTGTGT AGTGAGTCTC TACTTTTATG 000240 000241 GAATCCTGCA AAGTGATGCC TCAGGTAAGT GAATGGCTTT TGACAATGTA TTAAAATGCA AGTCATGCGT AGGGTAATGA 000320 000321 GTCCACTCTT CCTGAAAATG AATTTAAATA AACATAATGT TATTCATGTC CATTGTCTTC TGCGGTAGCA AATAATCATA 000400 000401 AAGCAGAATA ATAGAATTTT GATGATGG |
Predicted Small Protein
| Name | NONHSAT093949_smProtein_200:271 |
| Length | 24 |
| Molecular weight | 2595.0395 |
| Aromaticity | 0.173913043478 |
| Instability index | 60.0830434783 |
| Isoelectric point | 5.58477783203 |
| Runs | 5 |
| Runs residual | 0.0103519668737 |
| Runs probability | 0.0471294824237 |
| Amino acid sequence | MTLLWCVVSLYFYGILQSDASGK |
| Secondary structure | LEEEHHHHHHHHEEEEELLLLLL |
| PRMN | - |
| PiMo | - |
