Difference between revisions of "NONHSAT018294"

From LncRNAWiki
Jump to: navigation, search
 
Line 42: Line 42:
 
sequence = <dnaseq>TGGGTTCCAACCAACCCGCCCCTCGAGTGCCGGAATCAGCAGGACGAATCGGGTCCCAAAGATGTGGGCAAGACTGTTCCGAGGGTCGAAACTCTGGTTCAGGATAAGATTAGCAGGTATTTCACAGAGTCGACTTAAGGAAGCTAGTGCCGGAGAGGGAAGAAGTACGAAGGGCTTGCCAGTGAGCCTTAATGACTGATTGATCAAGTGGGAGGGCACTGCACTGGCGGTCAGAGAACTGTTCTGTCACTGACTTGCTCTTGTGATAATGGTAGGCTAGTGCATTTCTAGCTCAGGCGCAAATTTCTCCCGACTCTAAAGTCATACACTTGCCTTAGATGATGCCCAGTGGTCCTCTAATTAATGATTTTTTTTAAGCTTAAAGACCTTCATACTATACGTTGGCAAGGGTAAAGTGTAGAGCCTTTGTTTCACAAGAAGCCAGATAGTAATTTCTTCTCCAGGAAATCATTCCGTAAGTCAGAATTTCTCCTCTGTACCCACCCATAAATGATAATACAGGCCGTATTTTACCTGGTGCTGTATTTGTGTACCTGTCCGCTGTCAAAATCCAAGCCCTTGAAGGCAGGCTTCCTTCAGATCTTCATTGCCTTGCACAATGCAAGGGTAGGTACTTCCATCTTAATTGAATTTTTACTTCCCATAAAAATTCTTCATGGTGACTTACATTAGTCATCATTACACATCACCGTCAGTTTTGTAAGCACAGTGTCATTCAAGGTATTGTAAAATTTTGAGTTTGATGATGTGTGACAGTTTCAATTATTTTAGTACAGCCCTAATGAGAACAAGGCCGTAGTATTGATTCCCTTCAAAGTTGGCGTCTAAGTGAAGGTCACATTCACAAGGAGGGCCTAACTGAAAGCATGTGGAAGCATCATTATAAACTGTTGCTAACACGCACAAATAAAGGCTATTAATAGGTATTGtttttctttttctttttcttttttttttttttttgagtcactctcactccatcgcccaggctggagtgcagtagcaccatctcggctcactgcaacctccgcctcTGTTTTTCAGCTCCTTAGTTAAGCATACAGCTCCAGTCAAACCAAACTAGAGGTCTGTCTGTCCTTCCATTTTACTTGCTGTTTTATGTCTTTTAAAAGCAAGAAGGTTTTCAAACTGTTCTTAAAGCCACGGCTTAACCAGGAGTCCCTTTAATTAGAGCAACTGTACCTTTGTGAGTTGGAGGAATGCCAGGtaatatatattatttatatattttataaatgcaacatttataaatattaaaataaattttacatatatatatatatatatatatatatatatatatattttttttttttttttttttttttttttttgagacagagttttgctcttgcttcccaggctggagtgcgatagtgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctaagcctcccgagtagctgggattacaggtgcccaccaccacacccagctaattttttgtatttttagtagagacaggatttcactatgttggccaggctggtctggaactcttgacctcaggtgatccacccgcctcagcctgccagaatgttgggattacaggcgtaagccactgcgcccagccCATTTATATATTtttgttgcccaggtcatggtgcagtgatgtgaacatggcccactgcagcctcgacctccctggctcaagtgatcctcctgcctcagcctcccatgtatattgggaccacatgcgtgtgccaccatgcccagctaatttttaatttctttgtaaagatgaggtcttactttgttgcccaggctggcctcagaactcctgggctcaggtgatcctcccaccttagcctcccaaagtgctgggattacaggtgtgagtcactgtgcccagcAATATATTGTTTAAAAAAGCTTTCTTGCTGCATGTTTACTATCAGTCTTTTGCAATCTTTTAGGGTCAACACTATACCTCAATATAAAGTGTTAACTTCTTATCTATTTCATTGGAACCATGGAGGATTGAATGTGTGTGGGGAAAATGTCTTTGTGGTTTTAGAAATATGCAAAATCAGTTAATTTTTTAATGTGAAGGTAATAGTAGTTGAAATGCTTTTGAAAGTTGCTTGCCATTTCA</dnaseq>|
 
sequence = <dnaseq>TGGGTTCCAACCAACCCGCCCCTCGAGTGCCGGAATCAGCAGGACGAATCGGGTCCCAAAGATGTGGGCAAGACTGTTCCGAGGGTCGAAACTCTGGTTCAGGATAAGATTAGCAGGTATTTCACAGAGTCGACTTAAGGAAGCTAGTGCCGGAGAGGGAAGAAGTACGAAGGGCTTGCCAGTGAGCCTTAATGACTGATTGATCAAGTGGGAGGGCACTGCACTGGCGGTCAGAGAACTGTTCTGTCACTGACTTGCTCTTGTGATAATGGTAGGCTAGTGCATTTCTAGCTCAGGCGCAAATTTCTCCCGACTCTAAAGTCATACACTTGCCTTAGATGATGCCCAGTGGTCCTCTAATTAATGATTTTTTTTAAGCTTAAAGACCTTCATACTATACGTTGGCAAGGGTAAAGTGTAGAGCCTTTGTTTCACAAGAAGCCAGATAGTAATTTCTTCTCCAGGAAATCATTCCGTAAGTCAGAATTTCTCCTCTGTACCCACCCATAAATGATAATACAGGCCGTATTTTACCTGGTGCTGTATTTGTGTACCTGTCCGCTGTCAAAATCCAAGCCCTTGAAGGCAGGCTTCCTTCAGATCTTCATTGCCTTGCACAATGCAAGGGTAGGTACTTCCATCTTAATTGAATTTTTACTTCCCATAAAAATTCTTCATGGTGACTTACATTAGTCATCATTACACATCACCGTCAGTTTTGTAAGCACAGTGTCATTCAAGGTATTGTAAAATTTTGAGTTTGATGATGTGTGACAGTTTCAATTATTTTAGTACAGCCCTAATGAGAACAAGGCCGTAGTATTGATTCCCTTCAAAGTTGGCGTCTAAGTGAAGGTCACATTCACAAGGAGGGCCTAACTGAAAGCATGTGGAAGCATCATTATAAACTGTTGCTAACACGCACAAATAAAGGCTATTAATAGGTATTGtttttctttttctttttcttttttttttttttttgagtcactctcactccatcgcccaggctggagtgcagtagcaccatctcggctcactgcaacctccgcctcTGTTTTTCAGCTCCTTAGTTAAGCATACAGCTCCAGTCAAACCAAACTAGAGGTCTGTCTGTCCTTCCATTTTACTTGCTGTTTTATGTCTTTTAAAAGCAAGAAGGTTTTCAAACTGTTCTTAAAGCCACGGCTTAACCAGGAGTCCCTTTAATTAGAGCAACTGTACCTTTGTGAGTTGGAGGAATGCCAGGtaatatatattatttatatattttataaatgcaacatttataaatattaaaataaattttacatatatatatatatatatatatatatatatatatattttttttttttttttttttttttttttttgagacagagttttgctcttgcttcccaggctggagtgcgatagtgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctaagcctcccgagtagctgggattacaggtgcccaccaccacacccagctaattttttgtatttttagtagagacaggatttcactatgttggccaggctggtctggaactcttgacctcaggtgatccacccgcctcagcctgccagaatgttgggattacaggcgtaagccactgcgcccagccCATTTATATATTtttgttgcccaggtcatggtgcagtgatgtgaacatggcccactgcagcctcgacctccctggctcaagtgatcctcctgcctcagcctcccatgtatattgggaccacatgcgtgtgccaccatgcccagctaatttttaatttctttgtaaagatgaggtcttactttgttgcccaggctggcctcagaactcctgggctcaggtgatcctcccaccttagcctcccaaagtgctgggattacaggtgtgagtcactgtgcccagcAATATATTGTTTAAAAAAGCTTTCTTGCTGCATGTTTACTATCAGTCTTTTGCAATCTTTTAGGGTCAACACTATACCTCAATATAAAGTGTTAACTTCTTATCTATTTCATTGGAACCATGGAGGATTGAATGTGTGTGGGGAAAATGTCTTTGTGGTTTTAGAAATATGCAAAATCAGTTAATTTTTTAATGTGAAGGTAATAGTAGTTGAAATGCTTTTGAAAGTTGCTTGCCATTTCA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG007807]]
+
[[Category:Intergenic]][[Category:NONHSAG007807]][[Category:Transcripts]]

Latest revision as of 20:28, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT018294

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2182 nt

Genomic location

chr11+:18548579..18550760

Exon number

1

Exons

18548579..18550760

Genome context

Sequence
000001 TGGGTTCCAA CCAACCCGCC CCTCGAGTGC CGGAATCAGC AGGACGAATC GGGTCCCAAA GATGTGGGCA AGACTGTTCC 000080
000081 GAGGGTCGAA ACTCTGGTTC AGGATAAGAT TAGCAGGTAT TTCACAGAGT CGACTTAAGG AAGCTAGTGC CGGAGAGGGA 000160
000161 AGAAGTACGA AGGGCTTGCC AGTGAGCCTT AATGACTGAT TGATCAAGTG GGAGGGCACT GCACTGGCGG TCAGAGAACT 000240
000241 GTTCTGTCAC TGACTTGCTC TTGTGATAAT GGTAGGCTAG TGCATTTCTA GCTCAGGCGC AAATTTCTCC CGACTCTAAA 000320
000321 GTCATACACT TGCCTTAGAT GATGCCCAGT GGTCCTCTAA TTAATGATTT TTTTTAAGCT TAAAGACCTT CATACTATAC 000400
000401 GTTGGCAAGG GTAAAGTGTA GAGCCTTTGT TTCACAAGAA GCCAGATAGT AATTTCTTCT CCAGGAAATC ATTCCGTAAG 000480
000481 TCAGAATTTC TCCTCTGTAC CCACCCATAA ATGATAATAC AGGCCGTATT TTACCTGGTG CTGTATTTGT GTACCTGTCC 000560
000561 GCTGTCAAAA TCCAAGCCCT TGAAGGCAGG CTTCCTTCAG ATCTTCATTG CCTTGCACAA TGCAAGGGTA GGTACTTCCA 000640
000641 TCTTAATTGA ATTTTTACTT CCCATAAAAA TTCTTCATGG TGACTTACAT TAGTCATCAT TACACATCAC CGTCAGTTTT 000720
000721 GTAAGCACAG TGTCATTCAA GGTATTGTAA AATTTTGAGT TTGATGATGT GTGACAGTTT CAATTATTTT AGTACAGCCC 000800
000801 TAATGAGAAC AAGGCCGTAG TATTGATTCC CTTCAAAGTT GGCGTCTAAG TGAAGGTCAC ATTCACAAGG AGGGCCTAAC 000880
000881 TGAAAGCATG TGGAAGCATC ATTATAAACT GTTGCTAACA CGCACAAATA AAGGCTATTA ATAGGTATTG tttttctttt 000960
000961 tctttttctt tttttttttt ttttgagtca ctctcactcc atcgcccagg ctggagtgca gtagcaccat ctcggctcac 001040
001041 tgcaacctcc gcctcTGTTT TTCAGCTCCT TAGTTAAGCA TACAGCTCCA GTCAAACCAA ACTAGAGGTC TGTCTGTCCT 001120
001121 TCCATTTTAC TTGCTGTTTT ATGTCTTTTA AAAGCAAGAA GGTTTTCAAA CTGTTCTTAA AGCCACGGCT TAACCAGGAG 001200
001201 TCCCTTTAAT TAGAGCAACT GTACCTTTGT GAGTTGGAGG AATGCCAGGt aatatatatt atttatatat tttataaatg 001280
001281 caacatttat aaatattaaa ataaatttta catatatata tatatatata tatatatata tatatatttt tttttttttt 001360
001361 tttttttttt ttttttgaga cagagttttg ctcttgcttc ccaggctgga gtgcgatagt gtgatcttgg ctcactgcaa 001440
001441 cctctgcctc ccgggttcaa gcgattctcc tgcctaagcc tcccgagtag ctgggattac aggtgcccac caccacaccc 001520
001521 agctaatttt ttgtattttt agtagagaca ggatttcact atgttggcca ggctggtctg gaactcttga cctcaggtga 001600
001601 tccacccgcc tcagcctgcc agaatgttgg gattacaggc gtaagccact gcgcccagcc CATTTATATA TTtttgttgc 001680
001681 ccaggtcatg gtgcagtgat gtgaacatgg cccactgcag cctcgacctc cctggctcaa gtgatcctcc tgcctcagcc 001760
001761 tcccatgtat attgggacca catgcgtgtg ccaccatgcc cagctaattt ttaatttctt tgtaaagatg aggtcttact 001840
001841 ttgttgccca ggctggcctc agaactcctg ggctcaggtg atcctcccac cttagcctcc caaagtgctg ggattacagg 001920
001921 tgtgagtcac tgtgcccagc AATATATTGT TTAAAAAAGC TTTCTTGCTG CATGTTTACT ATCAGTCTTT TGCAATCTTT 002000
002001 TAGGGTCAAC ACTATACCTC AATATAAAGT GTTAACTTCT TATCTATTTC ATTGGAACCA TGGAGGATTG AATGTGTGTG 002080
002081 GGGAAAATGT CTTTGTGGTT TTAGAAATAT GCAAAATCAG TTAATTTTTT AATGTGAAGG TAATAGTAGT TGAAATGCTT 002160
002161 TTGAAAGTTG CTTGCCATTT CA
[back to top]

Predicted Small Protein

Name NONHSAT018294_smProtein_1706:1813
Length 36
Molecular weight 3794.2362
Aromaticity 0.0857142857143
Instability index 41.1171428571
Isoelectric point 5.69525146484
Runs 5
Runs residual 0.0382566585956
Runs probability 0.018212329977
Amino acid sequence MAHCSLDLPGSSDPPASASHVYWDHMRVPPCPANF
Secondary structure LLEEELLLLLLLLLLLLLLLLHHHHLLLLLLLLLL
PRMN -
PiMo -