Difference between revisions of "NONHSAT018294"
Line 42: | Line 42: | ||
sequence = <dnaseq>TGGGTTCCAACCAACCCGCCCCTCGAGTGCCGGAATCAGCAGGACGAATCGGGTCCCAAAGATGTGGGCAAGACTGTTCCGAGGGTCGAAACTCTGGTTCAGGATAAGATTAGCAGGTATTTCACAGAGTCGACTTAAGGAAGCTAGTGCCGGAGAGGGAAGAAGTACGAAGGGCTTGCCAGTGAGCCTTAATGACTGATTGATCAAGTGGGAGGGCACTGCACTGGCGGTCAGAGAACTGTTCTGTCACTGACTTGCTCTTGTGATAATGGTAGGCTAGTGCATTTCTAGCTCAGGCGCAAATTTCTCCCGACTCTAAAGTCATACACTTGCCTTAGATGATGCCCAGTGGTCCTCTAATTAATGATTTTTTTTAAGCTTAAAGACCTTCATACTATACGTTGGCAAGGGTAAAGTGTAGAGCCTTTGTTTCACAAGAAGCCAGATAGTAATTTCTTCTCCAGGAAATCATTCCGTAAGTCAGAATTTCTCCTCTGTACCCACCCATAAATGATAATACAGGCCGTATTTTACCTGGTGCTGTATTTGTGTACCTGTCCGCTGTCAAAATCCAAGCCCTTGAAGGCAGGCTTCCTTCAGATCTTCATTGCCTTGCACAATGCAAGGGTAGGTACTTCCATCTTAATTGAATTTTTACTTCCCATAAAAATTCTTCATGGTGACTTACATTAGTCATCATTACACATCACCGTCAGTTTTGTAAGCACAGTGTCATTCAAGGTATTGTAAAATTTTGAGTTTGATGATGTGTGACAGTTTCAATTATTTTAGTACAGCCCTAATGAGAACAAGGCCGTAGTATTGATTCCCTTCAAAGTTGGCGTCTAAGTGAAGGTCACATTCACAAGGAGGGCCTAACTGAAAGCATGTGGAAGCATCATTATAAACTGTTGCTAACACGCACAAATAAAGGCTATTAATAGGTATTGtttttctttttctttttcttttttttttttttttgagtcactctcactccatcgcccaggctggagtgcagtagcaccatctcggctcactgcaacctccgcctcTGTTTTTCAGCTCCTTAGTTAAGCATACAGCTCCAGTCAAACCAAACTAGAGGTCTGTCTGTCCTTCCATTTTACTTGCTGTTTTATGTCTTTTAAAAGCAAGAAGGTTTTCAAACTGTTCTTAAAGCCACGGCTTAACCAGGAGTCCCTTTAATTAGAGCAACTGTACCTTTGTGAGTTGGAGGAATGCCAGGtaatatatattatttatatattttataaatgcaacatttataaatattaaaataaattttacatatatatatatatatatatatatatatatatatattttttttttttttttttttttttttttttgagacagagttttgctcttgcttcccaggctggagtgcgatagtgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctaagcctcccgagtagctgggattacaggtgcccaccaccacacccagctaattttttgtatttttagtagagacaggatttcactatgttggccaggctggtctggaactcttgacctcaggtgatccacccgcctcagcctgccagaatgttgggattacaggcgtaagccactgcgcccagccCATTTATATATTtttgttgcccaggtcatggtgcagtgatgtgaacatggcccactgcagcctcgacctccctggctcaagtgatcctcctgcctcagcctcccatgtatattgggaccacatgcgtgtgccaccatgcccagctaatttttaatttctttgtaaagatgaggtcttactttgttgcccaggctggcctcagaactcctgggctcaggtgatcctcccaccttagcctcccaaagtgctgggattacaggtgtgagtcactgtgcccagcAATATATTGTTTAAAAAAGCTTTCTTGCTGCATGTTTACTATCAGTCTTTTGCAATCTTTTAGGGTCAACACTATACCTCAATATAAAGTGTTAACTTCTTATCTATTTCATTGGAACCATGGAGGATTGAATGTGTGTGGGGAAAATGTCTTTGTGGTTTTAGAAATATGCAAAATCAGTTAATTTTTTAATGTGAAGGTAATAGTAGTTGAAATGCTTTTGAAAGTTGCTTGCCATTTCA</dnaseq>| | sequence = <dnaseq>TGGGTTCCAACCAACCCGCCCCTCGAGTGCCGGAATCAGCAGGACGAATCGGGTCCCAAAGATGTGGGCAAGACTGTTCCGAGGGTCGAAACTCTGGTTCAGGATAAGATTAGCAGGTATTTCACAGAGTCGACTTAAGGAAGCTAGTGCCGGAGAGGGAAGAAGTACGAAGGGCTTGCCAGTGAGCCTTAATGACTGATTGATCAAGTGGGAGGGCACTGCACTGGCGGTCAGAGAACTGTTCTGTCACTGACTTGCTCTTGTGATAATGGTAGGCTAGTGCATTTCTAGCTCAGGCGCAAATTTCTCCCGACTCTAAAGTCATACACTTGCCTTAGATGATGCCCAGTGGTCCTCTAATTAATGATTTTTTTTAAGCTTAAAGACCTTCATACTATACGTTGGCAAGGGTAAAGTGTAGAGCCTTTGTTTCACAAGAAGCCAGATAGTAATTTCTTCTCCAGGAAATCATTCCGTAAGTCAGAATTTCTCCTCTGTACCCACCCATAAATGATAATACAGGCCGTATTTTACCTGGTGCTGTATTTGTGTACCTGTCCGCTGTCAAAATCCAAGCCCTTGAAGGCAGGCTTCCTTCAGATCTTCATTGCCTTGCACAATGCAAGGGTAGGTACTTCCATCTTAATTGAATTTTTACTTCCCATAAAAATTCTTCATGGTGACTTACATTAGTCATCATTACACATCACCGTCAGTTTTGTAAGCACAGTGTCATTCAAGGTATTGTAAAATTTTGAGTTTGATGATGTGTGACAGTTTCAATTATTTTAGTACAGCCCTAATGAGAACAAGGCCGTAGTATTGATTCCCTTCAAAGTTGGCGTCTAAGTGAAGGTCACATTCACAAGGAGGGCCTAACTGAAAGCATGTGGAAGCATCATTATAAACTGTTGCTAACACGCACAAATAAAGGCTATTAATAGGTATTGtttttctttttctttttcttttttttttttttttgagtcactctcactccatcgcccaggctggagtgcagtagcaccatctcggctcactgcaacctccgcctcTGTTTTTCAGCTCCTTAGTTAAGCATACAGCTCCAGTCAAACCAAACTAGAGGTCTGTCTGTCCTTCCATTTTACTTGCTGTTTTATGTCTTTTAAAAGCAAGAAGGTTTTCAAACTGTTCTTAAAGCCACGGCTTAACCAGGAGTCCCTTTAATTAGAGCAACTGTACCTTTGTGAGTTGGAGGAATGCCAGGtaatatatattatttatatattttataaatgcaacatttataaatattaaaataaattttacatatatatatatatatatatatatatatatatatattttttttttttttttttttttttttttttgagacagagttttgctcttgcttcccaggctggagtgcgatagtgtgatcttggctcactgcaacctctgcctcccgggttcaagcgattctcctgcctaagcctcccgagtagctgggattacaggtgcccaccaccacacccagctaattttttgtatttttagtagagacaggatttcactatgttggccaggctggtctggaactcttgacctcaggtgatccacccgcctcagcctgccagaatgttgggattacaggcgtaagccactgcgcccagccCATTTATATATTtttgttgcccaggtcatggtgcagtgatgtgaacatggcccactgcagcctcgacctccctggctcaagtgatcctcctgcctcagcctcccatgtatattgggaccacatgcgtgtgccaccatgcccagctaatttttaatttctttgtaaagatgaggtcttactttgttgcccaggctggcctcagaactcctgggctcaggtgatcctcccaccttagcctcccaaagtgctgggattacaggtgtgagtcactgtgcccagcAATATATTGTTTAAAAAAGCTTTCTTGCTGCATGTTTACTATCAGTCTTTTGCAATCTTTTAGGGTCAACACTATACCTCAATATAAAGTGTTAACTTCTTATCTATTTCATTGGAACCATGGAGGATTGAATGTGTGTGGGGAAAATGTCTTTGTGGTTTTAGAAATATGCAAAATCAGTTAATTTTTTAATGTGAAGGTAATAGTAGTTGAAATGCTTTTGAAAGTTGCTTGCCATTTCA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG007807]] | + | [[Category:Intergenic]][[Category:NONHSAG007807]][[Category:Transcripts]] |
Latest revision as of 20:28, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT018294 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2182 nt |
Genomic location |
chr11+:18548579..18550760 |
Exon number |
1 |
Exons |
18548579..18550760 |
Genome context |
|
Sequence |
000001 TGGGTTCCAA CCAACCCGCC CCTCGAGTGC CGGAATCAGC AGGACGAATC GGGTCCCAAA GATGTGGGCA AGACTGTTCC 000080
000081 GAGGGTCGAA ACTCTGGTTC AGGATAAGAT TAGCAGGTAT TTCACAGAGT CGACTTAAGG AAGCTAGTGC CGGAGAGGGA 000160 000161 AGAAGTACGA AGGGCTTGCC AGTGAGCCTT AATGACTGAT TGATCAAGTG GGAGGGCACT GCACTGGCGG TCAGAGAACT 000240 000241 GTTCTGTCAC TGACTTGCTC TTGTGATAAT GGTAGGCTAG TGCATTTCTA GCTCAGGCGC AAATTTCTCC CGACTCTAAA 000320 000321 GTCATACACT TGCCTTAGAT GATGCCCAGT GGTCCTCTAA TTAATGATTT TTTTTAAGCT TAAAGACCTT CATACTATAC 000400 000401 GTTGGCAAGG GTAAAGTGTA GAGCCTTTGT TTCACAAGAA GCCAGATAGT AATTTCTTCT CCAGGAAATC ATTCCGTAAG 000480 000481 TCAGAATTTC TCCTCTGTAC CCACCCATAA ATGATAATAC AGGCCGTATT TTACCTGGTG CTGTATTTGT GTACCTGTCC 000560 000561 GCTGTCAAAA TCCAAGCCCT TGAAGGCAGG CTTCCTTCAG ATCTTCATTG CCTTGCACAA TGCAAGGGTA GGTACTTCCA 000640 000641 TCTTAATTGA ATTTTTACTT CCCATAAAAA TTCTTCATGG TGACTTACAT TAGTCATCAT TACACATCAC CGTCAGTTTT 000720 000721 GTAAGCACAG TGTCATTCAA GGTATTGTAA AATTTTGAGT TTGATGATGT GTGACAGTTT CAATTATTTT AGTACAGCCC 000800 000801 TAATGAGAAC AAGGCCGTAG TATTGATTCC CTTCAAAGTT GGCGTCTAAG TGAAGGTCAC ATTCACAAGG AGGGCCTAAC 000880 000881 TGAAAGCATG TGGAAGCATC ATTATAAACT GTTGCTAACA CGCACAAATA AAGGCTATTA ATAGGTATTG tttttctttt 000960 000961 tctttttctt tttttttttt ttttgagtca ctctcactcc atcgcccagg ctggagtgca gtagcaccat ctcggctcac 001040 001041 tgcaacctcc gcctcTGTTT TTCAGCTCCT TAGTTAAGCA TACAGCTCCA GTCAAACCAA ACTAGAGGTC TGTCTGTCCT 001120 001121 TCCATTTTAC TTGCTGTTTT ATGTCTTTTA AAAGCAAGAA GGTTTTCAAA CTGTTCTTAA AGCCACGGCT TAACCAGGAG 001200 001201 TCCCTTTAAT TAGAGCAACT GTACCTTTGT GAGTTGGAGG AATGCCAGGt aatatatatt atttatatat tttataaatg 001280 001281 caacatttat aaatattaaa ataaatttta catatatata tatatatata tatatatata tatatatttt tttttttttt 001360 001361 tttttttttt ttttttgaga cagagttttg ctcttgcttc ccaggctgga gtgcgatagt gtgatcttgg ctcactgcaa 001440 001441 cctctgcctc ccgggttcaa gcgattctcc tgcctaagcc tcccgagtag ctgggattac aggtgcccac caccacaccc 001520 001521 agctaatttt ttgtattttt agtagagaca ggatttcact atgttggcca ggctggtctg gaactcttga cctcaggtga 001600 001601 tccacccgcc tcagcctgcc agaatgttgg gattacaggc gtaagccact gcgcccagcc CATTTATATA TTtttgttgc 001680 001681 ccaggtcatg gtgcagtgat gtgaacatgg cccactgcag cctcgacctc cctggctcaa gtgatcctcc tgcctcagcc 001760 001761 tcccatgtat attgggacca catgcgtgtg ccaccatgcc cagctaattt ttaatttctt tgtaaagatg aggtcttact 001840 001841 ttgttgccca ggctggcctc agaactcctg ggctcaggtg atcctcccac cttagcctcc caaagtgctg ggattacagg 001920 001921 tgtgagtcac tgtgcccagc AATATATTGT TTAAAAAAGC TTTCTTGCTG CATGTTTACT ATCAGTCTTT TGCAATCTTT 002000 002001 TAGGGTCAAC ACTATACCTC AATATAAAGT GTTAACTTCT TATCTATTTC ATTGGAACCA TGGAGGATTG AATGTGTGTG 002080 002081 GGGAAAATGT CTTTGTGGTT TTAGAAATAT GCAAAATCAG TTAATTTTTT AATGTGAAGG TAATAGTAGT TGAAATGCTT 002160 002161 TTGAAAGTTG CTTGCCATTT CA |
Predicted Small Protein
Name | NONHSAT018294_smProtein_1706:1813 |
Length | 36 |
Molecular weight | 3794.2362 |
Aromaticity | 0.0857142857143 |
Instability index | 41.1171428571 |
Isoelectric point | 5.69525146484 |
Runs | 5 |
Runs residual | 0.0382566585956 |
Runs probability | 0.018212329977 |
Amino acid sequence | MAHCSLDLPGSSDPPASASHVYWDHMRVPPCPANF |
Secondary structure | LLEEELLLLLLLLLLLLLLLLHHHHLLLLLLLLLL |
PRMN | - |
PiMo | - |