Difference between revisions of "NONHSAT021316"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>ataaaacttgcctaaggttacacagccgAGTTTTTCAGTTTTATTCTTCTAGAGCACAATTTTCCGGCCTGTTACTGAGTACGGTCTTCTAACAGGTACACAATTAACTCATAAGTAGACAACACAATGGCAGTATTTGGGATCCGCCGGATAAGCTGGGCAAACAGTCCTCTATAAAAGGCGAGGTAGCCTTCTTCCTGGAACACCAGGCGCGCCGTCTGGACAAAAGACTTGTACTTGGTGCCCTCTTCCCGGAGCCTCGTCCTTATAACTTCGTGTGGATAAGCAATGCAGGAGGCACAGCCCTTAGAAAGAGCAGCAGCTGCCATAAGTCCAAAAAAACTTGTGGAATTTTTCTCAGTCCCATTTGCAGAAGAGGCTAATGGAGCTTCTTTCAGATACTTCTTTAAACTTTCATAAATAGCAAAGCAGATTATAGTTTCGGAAATTCCAGCATACGAGGCAGTTAATCCTCTATAGAAGCCACGAATGCCTTCGGTCTGGTAAACGTAACGAGCACACTGGAGTGTATTCACCTGCTTAAAGCCCCTCACTTTCTGTTCTAGCTGCATTCGGGTTTTAACCATCCATATAGGATTCATTAAGGAATTTGTGATAAAAGCTGCAGAGCCAGCTGAGAAAATATGCACAATATTGCTGTTAGGCACGAAAATGCCATTAAATTGCTCTTTGGCTTTGGAGTAACATGCAAAGTATACAGCCCTTGATGGTGCAACTCCAACCAAATTTGGACCCAAGCCTCTAAAAAGTGACTTTGGTCCCTCTTTCTCCAAGATCGACTTCAGAACCTGAAAGAGTCCAGGTGTCACGGATGTTGGTCTCACCATTCCAGCTCCACTAATGGTCCCCAGATGAACCTGAGGATAGTAGACTGTCCGGAGAGCTAATCTTAAAGACTGCAACCGTGTCTTAATGACTTCTAGTGGACAAGTGAAAATAGCACCAACTGTGCCTCCACACCCGCCGGCGAAGAGGTGAAGCAGCGTGTTCTCCTTCTGCTGGCCGCCCGTCGCCATGGCCGCGCCGGCTCCGCGGCCCGTCGCCGCCCGGTGGCGAGAGCGCGTGGCGGCTCGAGGGATGCGCGGAGGTCGCCGGGTCTTGT</dnaseq>| | sequence = <dnaseq>ataaaacttgcctaaggttacacagccgAGTTTTTCAGTTTTATTCTTCTAGAGCACAATTTTCCGGCCTGTTACTGAGTACGGTCTTCTAACAGGTACACAATTAACTCATAAGTAGACAACACAATGGCAGTATTTGGGATCCGCCGGATAAGCTGGGCAAACAGTCCTCTATAAAAGGCGAGGTAGCCTTCTTCCTGGAACACCAGGCGCGCCGTCTGGACAAAAGACTTGTACTTGGTGCCCTCTTCCCGGAGCCTCGTCCTTATAACTTCGTGTGGATAAGCAATGCAGGAGGCACAGCCCTTAGAAAGAGCAGCAGCTGCCATAAGTCCAAAAAAACTTGTGGAATTTTTCTCAGTCCCATTTGCAGAAGAGGCTAATGGAGCTTCTTTCAGATACTTCTTTAAACTTTCATAAATAGCAAAGCAGATTATAGTTTCGGAAATTCCAGCATACGAGGCAGTTAATCCTCTATAGAAGCCACGAATGCCTTCGGTCTGGTAAACGTAACGAGCACACTGGAGTGTATTCACCTGCTTAAAGCCCCTCACTTTCTGTTCTAGCTGCATTCGGGTTTTAACCATCCATATAGGATTCATTAAGGAATTTGTGATAAAAGCTGCAGAGCCAGCTGAGAAAATATGCACAATATTGCTGTTAGGCACGAAAATGCCATTAAATTGCTCTTTGGCTTTGGAGTAACATGCAAAGTATACAGCCCTTGATGGTGCAACTCCAACCAAATTTGGACCCAAGCCTCTAAAAAGTGACTTTGGTCCCTCTTTCTCCAAGATCGACTTCAGAACCTGAAAGAGTCCAGGTGTCACGGATGTTGGTCTCACCATTCCAGCTCCACTAATGGTCCCCAGATGAACCTGAGGATAGTAGACTGTCCGGAGAGCTAATCTTAAAGACTGCAACCGTGTCTTAATGACTTCTAGTGGACAAGTGAAAATAGCACCAACTGTGCCTCCACACCCGCCGGCGAAGAGGTGAAGCAGCGTGTTCTCCTTCTGCTGGCCGCCCGTCGCCATGGCCGCGCCGGCTCCGCGGCCCGTCGCCGCCCGGTGGCGAGAGCGCGTGGCGGCTCGAGGGATGCGCGGAGGTCGCCGGGTCTTGT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG008284]] |
Revision as of 13:29, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT021316 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1123 nt |
| Genomic location |
chr11+:49453962..49456076 |
| Exon number |
2 |
| Exons |
49453962..49453989,49454982..49456076 |
| Genome context |
|
| Sequence |
000001 ataaaacttg cctaaggtta cacagccgAG TTTTTCAGTT TTATTCTTCT AGAGCACAAT TTTCCGGCCT GTTACTGAGT 000080
000081 ACGGTCTTCT AACAGGTACA CAATTAACTC ATAAGTAGAC AACACAATGG CAGTATTTGG GATCCGCCGG ATAAGCTGGG 000160 000161 CAAACAGTCC TCTATAAAAG GCGAGGTAGC CTTCTTCCTG GAACACCAGG CGCGCCGTCT GGACAAAAGA CTTGTACTTG 000240 000241 GTGCCCTCTT CCCGGAGCCT CGTCCTTATA ACTTCGTGTG GATAAGCAAT GCAGGAGGCA CAGCCCTTAG AAAGAGCAGC 000320 000321 AGCTGCCATA AGTCCAAAAA AACTTGTGGA ATTTTTCTCA GTCCCATTTG CAGAAGAGGC TAATGGAGCT TCTTTCAGAT 000400 000401 ACTTCTTTAA ACTTTCATAA ATAGCAAAGC AGATTATAGT TTCGGAAATT CCAGCATACG AGGCAGTTAA TCCTCTATAG 000480 000481 AAGCCACGAA TGCCTTCGGT CTGGTAAACG TAACGAGCAC ACTGGAGTGT ATTCACCTGC TTAAAGCCCC TCACTTTCTG 000560 000561 TTCTAGCTGC ATTCGGGTTT TAACCATCCA TATAGGATTC ATTAAGGAAT TTGTGATAAA AGCTGCAGAG CCAGCTGAGA 000640 000641 AAATATGCAC AATATTGCTG TTAGGCACGA AAATGCCATT AAATTGCTCT TTGGCTTTGG AGTAACATGC AAAGTATACA 000720 000721 GCCCTTGATG GTGCAACTCC AACCAAATTT GGACCCAAGC CTCTAAAAAG TGACTTTGGT CCCTCTTTCT CCAAGATCGA 000800 000801 CTTCAGAACC TGAAAGAGTC CAGGTGTCAC GGATGTTGGT CTCACCATTC CAGCTCCACT AATGGTCCCC AGATGAACCT 000880 000881 GAGGATAGTA GACTGTCCGG AGAGCTAATC TTAAAGACTG CAACCGTGTC TTAATGACTT CTAGTGGACA AGTGAAAATA 000960 000961 GCACCAACTG TGCCTCCACA CCCGCCGGCG AAGAGGTGAA GCAGCGTGTT CTCCTTCTGC TGGCCGCCCG TCGCCATGGC 001040 001041 CGCGCCGGCT CCGCGGCCCG TCGCCGCCCG GTGGCGAGAG CGCGTGGCGG CTCGAGGGAT GCGCGGAGGT CGCCGGGTCT 001120 001121 TGT |
Predicted Small Protein
| Name | NONHSAT021316_smProtein_644:727 |
| Length | 28 |
| Molecular weight | 3045.5813 |
| Aromaticity | 0.111111111111 |
| Instability index | 63.9259259259 |
| Isoelectric point | 9.18719482422 |
| Runs | 5 |
| Runs residual | 0.0214707461084 |
| Runs probability | 0.0414944356122 |
| Amino acid sequence | MHNIAVRHENAIKLLFGFGVTCKVYSP |
| Secondary structure | LLLHHHHHHHHHHHHHLLLLEEEEELL |
| PRMN | - |
| PiMo | - |
