Difference between revisions of "NONHSAT137621"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ctggaattacaggcatgagccaccgtgcctggccTCTTAGCTATTGTTATCAAAAGACTGCTATAAAAAAAAGAATGCACTGCTTAGAATGGAAAAACAGGTAAAAGATGATTAAGAGATATTTAAATGAggccgggcatagtggcttattcctataatcccccagcactttgggaggctgaggcaggcagatcacttgaggtcaggagttggagaccagcctggtcaacatggtgaaaccccgtccctactaaaaatacaaaaattagccaggagtggtggtgtccacctgtagtcccagctactcgggaagctggggcaggagaattgcttgaacccaggagacagaggccgcagtgagccaagatcacgacactgcactccagcctgggtgacagagcgaaaccctgtctcaaaaataaataaataaaTATTTAAATGAGAAGTAACACAGTTGTTTTTGATGGAAAAGTACTGCAAAAGCAGATTACAAGCGTAGAATAACCTTACAGTCATTAAAAAAATCTAGTGAAAGAGAAACGAACACAGCCATGTCCTAGCATAGGGATGAAACTAGAAAACAAAGAATAGAAATGCAAAACACGCGCGCATGCGCGcacacacacacacacacacacacacacacacacacaaaatcagGTCACTAACAAGTTTGGTTTGTAATAAGAGAAATTGTCAGAGAAATATGCCCACAAAAATGTATCCGTAAGTATGTTAAATATATTATGTTCAAATTTAATAAAAAACTAAGTCCTAATATTTAAAAGGAAAAAAATTTAATCAAAAAATAAAGGAAATGTTTTAAAACGATCCTGGTCCAAATGAAAGAATTCTATGCATTCACATCTAAAGAGAGGAAAATGTTCTTGTTAAGAGCCACCTAAAAATGTCATCAATATCCGTACACACTAGAAAGAAAGAAATATAGCAATAATCCAAGTTGGTTCTGCATATGCTTTAATTGTGCCATGCCTTTTTTTTTCAAATATTTGAAAATGAATACCTATGGCCTTTTATAATTTTTTTAATACAAAGTATACTGGAGGCAAAGAAAATATTCTTTGTAACCCTAAGTCATAGATACATATTTGAACTTATTATTTCCTTTAAAAAAATTGACTGAAGGCCCTCAGAGAATATGGAGGAAATACCAAGGAATAAAAGAGAAAGCATCACATGTTCAGGTAGTGGACATCAATTTACATAACACACTGACCTACATTAAAAATAATAGCTTAAAAAAAGAATGATTTTTAAATCATAAAACTATTTTAATGTAATTGTTTCACTTTAATCAAGGAGGAAAAGAATGAACAGTGATGCCAAAGATATCACATCTAGAATAGAAAATATTTGTGTTAATTTTTGGAAAACCTGTGGTAATATTGCTATGGCTGCCTCAATCCCAGTACATTGAAGTTGCATCTTACTACTTCAGAGTCAACATCAAGATTTTTATTGCAAAAGTTAAACGATTCTTGATTTTATATGTTACTATGACCAAGCTCATTAGCTTAATAAAATGTATAAGCAATTAACAAAAGCATCACATGAATGTTCCAGAGCAGCATAATCCATTAGATAGCAGAAAAACAAAATGTGGTATACAAGCAAATTGTATATCTAAACAAATACATACTAATAGATGTATATAAACAAAACATGGTACATAAACAAAatgaatgataaacaaaatgtggcatatacacacaatgaaatattattcagctataaaaaagaataaagttctgacatatgctataacatggatgaaccttgaaggcattgtgctaagtgaaatacgccagaagcaaaaggacaaatattgtatgattccacttatacaaaatatttggaataggcaaattcagagactgaaagtagattagaggttaccaagggcaaaaaggagaaggagacaaatgtactatactaattcaagatattaacaatagggaaaactggtcgggctcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggatcacgag</dnaseq>| | sequence = <dnaseq>ctggaattacaggcatgagccaccgtgcctggccTCTTAGCTATTGTTATCAAAAGACTGCTATAAAAAAAAGAATGCACTGCTTAGAATGGAAAAACAGGTAAAAGATGATTAAGAGATATTTAAATGAggccgggcatagtggcttattcctataatcccccagcactttgggaggctgaggcaggcagatcacttgaggtcaggagttggagaccagcctggtcaacatggtgaaaccccgtccctactaaaaatacaaaaattagccaggagtggtggtgtccacctgtagtcccagctactcgggaagctggggcaggagaattgcttgaacccaggagacagaggccgcagtgagccaagatcacgacactgcactccagcctgggtgacagagcgaaaccctgtctcaaaaataaataaataaaTATTTAAATGAGAAGTAACACAGTTGTTTTTGATGGAAAAGTACTGCAAAAGCAGATTACAAGCGTAGAATAACCTTACAGTCATTAAAAAAATCTAGTGAAAGAGAAACGAACACAGCCATGTCCTAGCATAGGGATGAAACTAGAAAACAAAGAATAGAAATGCAAAACACGCGCGCATGCGCGcacacacacacacacacacacacacacacacacacaaaatcagGTCACTAACAAGTTTGGTTTGTAATAAGAGAAATTGTCAGAGAAATATGCCCACAAAAATGTATCCGTAAGTATGTTAAATATATTATGTTCAAATTTAATAAAAAACTAAGTCCTAATATTTAAAAGGAAAAAAATTTAATCAAAAAATAAAGGAAATGTTTTAAAACGATCCTGGTCCAAATGAAAGAATTCTATGCATTCACATCTAAAGAGAGGAAAATGTTCTTGTTAAGAGCCACCTAAAAATGTCATCAATATCCGTACACACTAGAAAGAAAGAAATATAGCAATAATCCAAGTTGGTTCTGCATATGCTTTAATTGTGCCATGCCTTTTTTTTTCAAATATTTGAAAATGAATACCTATGGCCTTTTATAATTTTTTTAATACAAAGTATACTGGAGGCAAAGAAAATATTCTTTGTAACCCTAAGTCATAGATACATATTTGAACTTATTATTTCCTTTAAAAAAATTGACTGAAGGCCCTCAGAGAATATGGAGGAAATACCAAGGAATAAAAGAGAAAGCATCACATGTTCAGGTAGTGGACATCAATTTACATAACACACTGACCTACATTAAAAATAATAGCTTAAAAAAAGAATGATTTTTAAATCATAAAACTATTTTAATGTAATTGTTTCACTTTAATCAAGGAGGAAAAGAATGAACAGTGATGCCAAAGATATCACATCTAGAATAGAAAATATTTGTGTTAATTTTTGGAAAACCTGTGGTAATATTGCTATGGCTGCCTCAATCCCAGTACATTGAAGTTGCATCTTACTACTTCAGAGTCAACATCAAGATTTTTATTGCAAAAGTTAAACGATTCTTGATTTTATATGTTACTATGACCAAGCTCATTAGCTTAATAAAATGTATAAGCAATTAACAAAAGCATCACATGAATGTTCCAGAGCAGCATAATCCATTAGATAGCAGAAAAACAAAATGTGGTATACAAGCAAATTGTATATCTAAACAAATACATACTAATAGATGTATATAAACAAAACATGGTACATAAACAAAatgaatgataaacaaaatgtggcatatacacacaatgaaatattattcagctataaaaaagaataaagttctgacatatgctataacatggatgaaccttgaaggcattgtgctaagtgaaatacgccagaagcaaaaggacaaatattgtatgattccacttatacaaaatatttggaataggcaaattcagagactgaaagtagattagaggttaccaagggcaaaaaggagaaggagacaaatgtactatactaattcaagatattaacaatagggaaaactggtcgggctcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggatcacgag</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG054803]] |
Revision as of 13:30, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT137621 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2051 nt |
Genomic location |
chrX+:73463465..73465515 |
Exon number |
1 |
Exons |
73463465..73465515 |
Genome context |
|
Sequence |
000001 ctggaattac aggcatgagc caccgtgcct ggccTCTTAG CTATTGTTAT CAAAAGACTG CTATAAAAAA AAGAATGCAC 000080
000081 TGCTTAGAAT GGAAAAACAG GTAAAAGATG ATTAAGAGAT ATTTAAATGA ggccgggcat agtggcttat tcctataatc 000160 000161 ccccagcact ttgggaggct gaggcaggca gatcacttga ggtcaggagt tggagaccag cctggtcaac atggtgaaac 000240 000241 cccgtcccta ctaaaaatac aaaaattagc caggagtggt ggtgtccacc tgtagtccca gctactcggg aagctggggc 000320 000321 aggagaattg cttgaaccca ggagacagag gccgcagtga gccaagatca cgacactgca ctccagcctg ggtgacagag 000400 000401 cgaaaccctg tctcaaaaat aaataaataa aTATTTAAAT GAGAAGTAAC ACAGTTGTTT TTGATGGAAA AGTACTGCAA 000480 000481 AAGCAGATTA CAAGCGTAGA ATAACCTTAC AGTCATTAAA AAAATCTAGT GAAAGAGAAA CGAACACAGC CATGTCCTAG 000560 000561 CATAGGGATG AAACTAGAAA ACAAAGAATA GAAATGCAAA ACACGCGCGC ATGCGCGcac acacacacac acacacacac 000640 000641 acacacacac acaaaatcag GTCACTAACA AGTTTGGTTT GTAATAAGAG AAATTGTCAG AGAAATATGC CCACAAAAAT 000720 000721 GTATCCGTAA GTATGTTAAA TATATTATGT TCAAATTTAA TAAAAAACTA AGTCCTAATA TTTAAAAGGA AAAAAATTTA 000800 000801 ATCAAAAAAT AAAGGAAATG TTTTAAAACG ATCCTGGTCC AAATGAAAGA ATTCTATGCA TTCACATCTA AAGAGAGGAA 000880 000881 AATGTTCTTG TTAAGAGCCA CCTAAAAATG TCATCAATAT CCGTACACAC TAGAAAGAAA GAAATATAGC AATAATCCAA 000960 000961 GTTGGTTCTG CATATGCTTT AATTGTGCCA TGCCTTTTTT TTTCAAATAT TTGAAAATGA ATACCTATGG CCTTTTATAA 001040 001041 TTTTTTTAAT ACAAAGTATA CTGGAGGCAA AGAAAATATT CTTTGTAACC CTAAGTCATA GATACATATT TGAACTTATT 001120 001121 ATTTCCTTTA AAAAAATTGA CTGAAGGCCC TCAGAGAATA TGGAGGAAAT ACCAAGGAAT AAAAGAGAAA GCATCACATG 001200 001201 TTCAGGTAGT GGACATCAAT TTACATAACA CACTGACCTA CATTAAAAAT AATAGCTTAA AAAAAGAATG ATTTTTAAAT 001280 001281 CATAAAACTA TTTTAATGTA ATTGTTTCAC TTTAATCAAG GAGGAAAAGA ATGAACAGTG ATGCCAAAGA TATCACATCT 001360 001361 AGAATAGAAA ATATTTGTGT TAATTTTTGG AAAACCTGTG GTAATATTGC TATGGCTGCC TCAATCCCAG TACATTGAAG 001440 001441 TTGCATCTTA CTACTTCAGA GTCAACATCA AGATTTTTAT TGCAAAAGTT AAACGATTCT TGATTTTATA TGTTACTATG 001520 001521 ACCAAGCTCA TTAGCTTAAT AAAATGTATA AGCAATTAAC AAAAGCATCA CATGAATGTT CCAGAGCAGC ATAATCCATT 001600 001601 AGATAGCAGA AAAACAAAAT GTGGTATACA AGCAAATTGT ATATCTAAAC AAATACATAC TAATAGATGT ATATAAACAA 001680 001681 AACATGGTAC ATAAACAAAa tgaatgataa acaaaatgtg gcatatacac acaatgaaat attattcagc tataaaaaag 001760 001761 aataaagttc tgacatatgc tataacatgg atgaaccttg aaggcattgt gctaagtgaa atacgccaga agcaaaagga 001840 001841 caaatattgt atgattccac ttatacaaaa tatttggaat aggcaaattc agagactgaa agtagattag aggttaccaa 001920 001921 gggcaaaaag gagaaggaga caaatgtact atactaattc aagatattaa caatagggaa aactggtcgg gctcggtggc 002000 002001 tcaggcctgt aatcccagca ctttgggagg ccgaggcggg cggatcacga g |
Predicted Small Protein
Name | NONHSAT137621_smProtein_1703:1909 |
Length | 69 |
Molecular weight | 8352.9545 |
Aromaticity | 0.102941176471 |
Instability index | 55.3338235294 |
Isoelectric point | 9.94342041016 |
Runs | 10 |
Runs residual | 0.00655802861685 |
Runs probability | 0.0452570217276 |
Amino acid sequence | MINKMWHIHTMKYYSAIKKNKVLTYAITWMNLEGIVLSEIRQKQKDKYCMIPLIQNIWNR QIQRLKVD |
Secondary structure | LLLLLLHHHHHHHHHHHHLLLEEEEHHHHHHHHLLLHHHHHHHHLLLLLLLHHHHHHHHH HHHHHLLL |
PRMN | - |
PiMo | - |