Difference between revisions of "NONHSAT137621"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>ctggaattacaggcatgagccaccgtgcctggccTCTTAGCTATTGTTATCAAAAGACTGCTATAAAAAAAAGAATGCACTGCTTAGAATGGAAAAACAGGTAAAAGATGATTAAGAGATATTTAAATGAggccgggcatagtggcttattcctataatcccccagcactttgggaggctgaggcaggcagatcacttgaggtcaggagttggagaccagcctggtcaacatggtgaaaccccgtccctactaaaaatacaaaaattagccaggagtggtggtgtccacctgtagtcccagctactcgggaagctggggcaggagaattgcttgaacccaggagacagaggccgcagtgagccaagatcacgacactgcactccagcctgggtgacagagcgaaaccctgtctcaaaaataaataaataaaTATTTAAATGAGAAGTAACACAGTTGTTTTTGATGGAAAAGTACTGCAAAAGCAGATTACAAGCGTAGAATAACCTTACAGTCATTAAAAAAATCTAGTGAAAGAGAAACGAACACAGCCATGTCCTAGCATAGGGATGAAACTAGAAAACAAAGAATAGAAATGCAAAACACGCGCGCATGCGCGcacacacacacacacacacacacacacacacacacaaaatcagGTCACTAACAAGTTTGGTTTGTAATAAGAGAAATTGTCAGAGAAATATGCCCACAAAAATGTATCCGTAAGTATGTTAAATATATTATGTTCAAATTTAATAAAAAACTAAGTCCTAATATTTAAAAGGAAAAAAATTTAATCAAAAAATAAAGGAAATGTTTTAAAACGATCCTGGTCCAAATGAAAGAATTCTATGCATTCACATCTAAAGAGAGGAAAATGTTCTTGTTAAGAGCCACCTAAAAATGTCATCAATATCCGTACACACTAGAAAGAAAGAAATATAGCAATAATCCAAGTTGGTTCTGCATATGCTTTAATTGTGCCATGCCTTTTTTTTTCAAATATTTGAAAATGAATACCTATGGCCTTTTATAATTTTTTTAATACAAAGTATACTGGAGGCAAAGAAAATATTCTTTGTAACCCTAAGTCATAGATACATATTTGAACTTATTATTTCCTTTAAAAAAATTGACTGAAGGCCCTCAGAGAATATGGAGGAAATACCAAGGAATAAAAGAGAAAGCATCACATGTTCAGGTAGTGGACATCAATTTACATAACACACTGACCTACATTAAAAATAATAGCTTAAAAAAAGAATGATTTTTAAATCATAAAACTATTTTAATGTAATTGTTTCACTTTAATCAAGGAGGAAAAGAATGAACAGTGATGCCAAAGATATCACATCTAGAATAGAAAATATTTGTGTTAATTTTTGGAAAACCTGTGGTAATATTGCTATGGCTGCCTCAATCCCAGTACATTGAAGTTGCATCTTACTACTTCAGAGTCAACATCAAGATTTTTATTGCAAAAGTTAAACGATTCTTGATTTTATATGTTACTATGACCAAGCTCATTAGCTTAATAAAATGTATAAGCAATTAACAAAAGCATCACATGAATGTTCCAGAGCAGCATAATCCATTAGATAGCAGAAAAACAAAATGTGGTATACAAGCAAATTGTATATCTAAACAAATACATACTAATAGATGTATATAAACAAAACATGGTACATAAACAAAatgaatgataaacaaaatgtggcatatacacacaatgaaatattattcagctataaaaaagaataaagttctgacatatgctataacatggatgaaccttgaaggcattgtgctaagtgaaatacgccagaagcaaaaggacaaatattgtatgattccacttatacaaaatatttggaataggcaaattcagagactgaaagtagattagaggttaccaagggcaaaaaggagaaggagacaaatgtactatactaattcaagatattaacaatagggaaaactggtcgggctcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggatcacgag</dnaseq>|
 
sequence = <dnaseq>ctggaattacaggcatgagccaccgtgcctggccTCTTAGCTATTGTTATCAAAAGACTGCTATAAAAAAAAGAATGCACTGCTTAGAATGGAAAAACAGGTAAAAGATGATTAAGAGATATTTAAATGAggccgggcatagtggcttattcctataatcccccagcactttgggaggctgaggcaggcagatcacttgaggtcaggagttggagaccagcctggtcaacatggtgaaaccccgtccctactaaaaatacaaaaattagccaggagtggtggtgtccacctgtagtcccagctactcgggaagctggggcaggagaattgcttgaacccaggagacagaggccgcagtgagccaagatcacgacactgcactccagcctgggtgacagagcgaaaccctgtctcaaaaataaataaataaaTATTTAAATGAGAAGTAACACAGTTGTTTTTGATGGAAAAGTACTGCAAAAGCAGATTACAAGCGTAGAATAACCTTACAGTCATTAAAAAAATCTAGTGAAAGAGAAACGAACACAGCCATGTCCTAGCATAGGGATGAAACTAGAAAACAAAGAATAGAAATGCAAAACACGCGCGCATGCGCGcacacacacacacacacacacacacacacacacacaaaatcagGTCACTAACAAGTTTGGTTTGTAATAAGAGAAATTGTCAGAGAAATATGCCCACAAAAATGTATCCGTAAGTATGTTAAATATATTATGTTCAAATTTAATAAAAAACTAAGTCCTAATATTTAAAAGGAAAAAAATTTAATCAAAAAATAAAGGAAATGTTTTAAAACGATCCTGGTCCAAATGAAAGAATTCTATGCATTCACATCTAAAGAGAGGAAAATGTTCTTGTTAAGAGCCACCTAAAAATGTCATCAATATCCGTACACACTAGAAAGAAAGAAATATAGCAATAATCCAAGTTGGTTCTGCATATGCTTTAATTGTGCCATGCCTTTTTTTTTCAAATATTTGAAAATGAATACCTATGGCCTTTTATAATTTTTTTAATACAAAGTATACTGGAGGCAAAGAAAATATTCTTTGTAACCCTAAGTCATAGATACATATTTGAACTTATTATTTCCTTTAAAAAAATTGACTGAAGGCCCTCAGAGAATATGGAGGAAATACCAAGGAATAAAAGAGAAAGCATCACATGTTCAGGTAGTGGACATCAATTTACATAACACACTGACCTACATTAAAAATAATAGCTTAAAAAAAGAATGATTTTTAAATCATAAAACTATTTTAATGTAATTGTTTCACTTTAATCAAGGAGGAAAAGAATGAACAGTGATGCCAAAGATATCACATCTAGAATAGAAAATATTTGTGTTAATTTTTGGAAAACCTGTGGTAATATTGCTATGGCTGCCTCAATCCCAGTACATTGAAGTTGCATCTTACTACTTCAGAGTCAACATCAAGATTTTTATTGCAAAAGTTAAACGATTCTTGATTTTATATGTTACTATGACCAAGCTCATTAGCTTAATAAAATGTATAAGCAATTAACAAAAGCATCACATGAATGTTCCAGAGCAGCATAATCCATTAGATAGCAGAAAAACAAAATGTGGTATACAAGCAAATTGTATATCTAAACAAATACATACTAATAGATGTATATAAACAAAACATGGTACATAAACAAAatgaatgataaacaaaatgtggcatatacacacaatgaaatattattcagctataaaaaagaataaagttctgacatatgctataacatggatgaaccttgaaggcattgtgctaagtgaaatacgccagaagcaaaaggacaaatattgtatgattccacttatacaaaatatttggaataggcaaattcagagactgaaagtagattagaggttaccaagggcaaaaaggagaaggagacaaatgtactatactaattcaagatattaacaatagggaaaactggtcgggctcggtggctcaggcctgtaatcccagcactttgggaggccgaggcgggcggatcacgag</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG054803]]

Revision as of 13:30, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT137621

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2051 nt

Genomic location

chrX+:73463465..73465515

Exon number

1

Exons

73463465..73465515

Genome context

Sequence
000001 ctggaattac aggcatgagc caccgtgcct ggccTCTTAG CTATTGTTAT CAAAAGACTG CTATAAAAAA AAGAATGCAC 000080
000081 TGCTTAGAAT GGAAAAACAG GTAAAAGATG ATTAAGAGAT ATTTAAATGA ggccgggcat agtggcttat tcctataatc 000160
000161 ccccagcact ttgggaggct gaggcaggca gatcacttga ggtcaggagt tggagaccag cctggtcaac atggtgaaac 000240
000241 cccgtcccta ctaaaaatac aaaaattagc caggagtggt ggtgtccacc tgtagtccca gctactcggg aagctggggc 000320
000321 aggagaattg cttgaaccca ggagacagag gccgcagtga gccaagatca cgacactgca ctccagcctg ggtgacagag 000400
000401 cgaaaccctg tctcaaaaat aaataaataa aTATTTAAAT GAGAAGTAAC ACAGTTGTTT TTGATGGAAA AGTACTGCAA 000480
000481 AAGCAGATTA CAAGCGTAGA ATAACCTTAC AGTCATTAAA AAAATCTAGT GAAAGAGAAA CGAACACAGC CATGTCCTAG 000560
000561 CATAGGGATG AAACTAGAAA ACAAAGAATA GAAATGCAAA ACACGCGCGC ATGCGCGcac acacacacac acacacacac 000640
000641 acacacacac acaaaatcag GTCACTAACA AGTTTGGTTT GTAATAAGAG AAATTGTCAG AGAAATATGC CCACAAAAAT 000720
000721 GTATCCGTAA GTATGTTAAA TATATTATGT TCAAATTTAA TAAAAAACTA AGTCCTAATA TTTAAAAGGA AAAAAATTTA 000800
000801 ATCAAAAAAT AAAGGAAATG TTTTAAAACG ATCCTGGTCC AAATGAAAGA ATTCTATGCA TTCACATCTA AAGAGAGGAA 000880
000881 AATGTTCTTG TTAAGAGCCA CCTAAAAATG TCATCAATAT CCGTACACAC TAGAAAGAAA GAAATATAGC AATAATCCAA 000960
000961 GTTGGTTCTG CATATGCTTT AATTGTGCCA TGCCTTTTTT TTTCAAATAT TTGAAAATGA ATACCTATGG CCTTTTATAA 001040
001041 TTTTTTTAAT ACAAAGTATA CTGGAGGCAA AGAAAATATT CTTTGTAACC CTAAGTCATA GATACATATT TGAACTTATT 001120
001121 ATTTCCTTTA AAAAAATTGA CTGAAGGCCC TCAGAGAATA TGGAGGAAAT ACCAAGGAAT AAAAGAGAAA GCATCACATG 001200
001201 TTCAGGTAGT GGACATCAAT TTACATAACA CACTGACCTA CATTAAAAAT AATAGCTTAA AAAAAGAATG ATTTTTAAAT 001280
001281 CATAAAACTA TTTTAATGTA ATTGTTTCAC TTTAATCAAG GAGGAAAAGA ATGAACAGTG ATGCCAAAGA TATCACATCT 001360
001361 AGAATAGAAA ATATTTGTGT TAATTTTTGG AAAACCTGTG GTAATATTGC TATGGCTGCC TCAATCCCAG TACATTGAAG 001440
001441 TTGCATCTTA CTACTTCAGA GTCAACATCA AGATTTTTAT TGCAAAAGTT AAACGATTCT TGATTTTATA TGTTACTATG 001520
001521 ACCAAGCTCA TTAGCTTAAT AAAATGTATA AGCAATTAAC AAAAGCATCA CATGAATGTT CCAGAGCAGC ATAATCCATT 001600
001601 AGATAGCAGA AAAACAAAAT GTGGTATACA AGCAAATTGT ATATCTAAAC AAATACATAC TAATAGATGT ATATAAACAA 001680
001681 AACATGGTAC ATAAACAAAa tgaatgataa acaaaatgtg gcatatacac acaatgaaat attattcagc tataaaaaag 001760
001761 aataaagttc tgacatatgc tataacatgg atgaaccttg aaggcattgt gctaagtgaa atacgccaga agcaaaagga 001840
001841 caaatattgt atgattccac ttatacaaaa tatttggaat aggcaaattc agagactgaa agtagattag aggttaccaa 001920
001921 gggcaaaaag gagaaggaga caaatgtact atactaattc aagatattaa caatagggaa aactggtcgg gctcggtggc 002000
002001 tcaggcctgt aatcccagca ctttgggagg ccgaggcggg cggatcacga g
[back to top]

Predicted Small Protein

Name NONHSAT137621_smProtein_1703:1909
Length 69
Molecular weight 8352.9545
Aromaticity 0.102941176471
Instability index 55.3338235294
Isoelectric point 9.94342041016
Runs 10
Runs residual 0.00655802861685
Runs probability 0.0452570217276
Amino acid sequence MINKMWHIHTMKYYSAIKKNKVLTYAITWMNLEGIVLSEIRQKQKDKYCMIPLIQNIWNR
QIQRLKVD
Secondary structure LLLLLLHHHHHHHHHHHHLLLEEEEHHHHHHHHLLLHHHHHHHHLLLLLLLHHHHHHHHH
HHHHHLLL
PRMN -
PiMo -