Difference between revisions of "ENST00000539784.1"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
Line 42: | Line 42: | ||
sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>| | sequence = <dnaseq>GTCTGAAGCTCTGGGAACGGGGGCAGAAAGCTGTATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACCCTGTGGTGGGGATTGCTTACAGGAGGGGCCGGCTGCCTGCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:lnc-TEAD4-2]] |
Revision as of 13:30, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
ENST00000539784.1 |
Source |
Gencode19 |
Same with |
lnc-TEAD4-2:1,NONHSAT025504 |
Classification |
intronic(S) |
Length |
562 nt |
Genomic location |
chr12+:3258963..3260642 |
Exon number |
2 |
Exons |
3258963..3259032,3260151..3260642 |
Genome context |
|
Sequence |
000001 GTCTGAAGCT CTGGGAACGG GGGCAGAAAG CTGTATTTCG AAAAGCTTCC CACATGATTT TGATGCAAAG CGTCCCCAGC 000080
000081 CTCCAGCCAG CTTCGCTAGC CAGGGACACA ATTGGATTGC AATTTCTAGC ACTTCCTGGA GATCAGGTCC CTGAAGAGCT 000160 000161 ATAAAAATCC AGCGGTGTTT CTGGCCACCT TTCCATGTGG TTTGTAGTGC ACTGTCAGTC ACACACGCCT GCAGAGCATG 000240 000241 TGTGTGTTTG TGTTTGCACA CGTGTGTGCA TGTGTGTGAG TGGGTGCATG CATGCATGTG TATTTGGCTT TAAGGGAGGC 000320 000321 TCTCATATTG CATTACCTAT GTTGCTAGTT TCTGGCTGCC AGTTTGCATT TCTTAGGCGG ATTTTCTGAT TCCAGGCTCG 000400 000401 GGAGGGCTCC CCTGCACTGT ATGTAATTGG GCACGAAGCC CGTGGTGGGG TGGATTTGGG TAATGGCAGG GCTGCATTCC 000480 000481 TCCCATTCTT TTCTCACAGG AAAAAGTGCC TGGATATAAC CCTGTGGTGG GGATTGCTTA CAGGAGGGGC CGGCTGCCTG 000560 000561 CC |
Predicted Small Protein
Name | ENST00000539784.1_smProtein_194:388 |
Length | 65 |
Molecular weight | 7093.5765 |
Aromaticity | 0.109375 |
Instability index | 59.121875 |
Isoelectric point | 8.46173095703 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0558205264087 |
Amino acid sequence | MWFVVHCQSHTPAEHVCVCVCTRVCMCVSGCMHACVFGFKGGSHIALPMLLVSGCQFAFL RRIF |
Secondary structure | LEEEEEELLLLLLLEEEEEEEEEEEEEELLLEEEEEEELLLLLLEEEHHHHLLLHHHHHH HHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii iiii |