Difference between revisions of "NONHSAT021364"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ATGGGAACAAGTAATAATGTTACAGAATTTGTCCTCCCAGGCCTCTCTCAGGATCCTGATGTGCAAAAAGCATTATTTGTAATGTTTTTACTCACATACAATGTGACTATGGTGGGCAACCTTCTCATTGTGGTGACCATTATTGCCATCGCCTCCTTGGACTCCCCAGTGTCCTTCTTCCTCGCATGCCTGTCATTTATTGATGCTGTATATTCCACTTCCTTTTCCCCTAAGTTGATGATAGACTTACTCTGTGATAAAAAAGACTGTTTCTTTCCTGGCTTGCATGGGCCAGCTATTTATAAACTACCCATTTGGTGGTATTGAGGTCTTTCTTTTGGTGGGTATGGCCTGTGATCACTATGTGGACATCTGTAAGCTACTGCACTATTTGACCATCATGAACTGGCAGGTTTGCATCCTCCTGTTTATGGTGGCTGTGACTGGAGGTTTTTGCATTCTATGTTTCAAATTGTTGTTGTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCATTTTGTGACATGTACCCATTATTGGAAATGGTGTGCACTGACACTTACTTTATAGGCCTCACTGTGATTGCCAATGGTGGAGCAGTCTGTATGGTCATCTTCATCCTTCTACTAATCTCCTATGGAGTCATCCTAAACTCCCTTAAAACTTATAGTCAGGAAGGCGGGCATAAAGCCCTGTCTACCTGCAGCTCCAACATTACTGTTGTGTCCCCTTTTTTGATCCCTGTATTTTCATCTATGTTAGACCTGATTCAAACTTTCCTATTGATAAATTCATGACTGTGTTTTATACAATTATCACATCCATGTTGAATCCATTAATATACACACTGAGAAATTTAGAGGTGAGAATTGCTGTGAAAAAACTCTGGTGTAAAAAC</dnaseq>| | sequence = <dnaseq>ATGGGAACAAGTAATAATGTTACAGAATTTGTCCTCCCAGGCCTCTCTCAGGATCCTGATGTGCAAAAAGCATTATTTGTAATGTTTTTACTCACATACAATGTGACTATGGTGGGCAACCTTCTCATTGTGGTGACCATTATTGCCATCGCCTCCTTGGACTCCCCAGTGTCCTTCTTCCTCGCATGCCTGTCATTTATTGATGCTGTATATTCCACTTCCTTTTCCCCTAAGTTGATGATAGACTTACTCTGTGATAAAAAAGACTGTTTCTTTCCTGGCTTGCATGGGCCAGCTATTTATAAACTACCCATTTGGTGGTATTGAGGTCTTTCTTTTGGTGGGTATGGCCTGTGATCACTATGTGGACATCTGTAAGCTACTGCACTATTTGACCATCATGAACTGGCAGGTTTGCATCCTCCTGTTTATGGTGGCTGTGACTGGAGGTTTTTGCATTCTATGTTTCAAATTGTTGTTGTGTACAGTCTCCCTTTCTGTGGCCCCAATGTCATTGACCATTTTGTGACATGTACCCATTATTGGAAATGGTGTGCACTGACACTTACTTTATAGGCCTCACTGTGATTGCCAATGGTGGAGCAGTCTGTATGGTCATCTTCATCCTTCTACTAATCTCCTATGGAGTCATCCTAAACTCCCTTAAAACTTATAGTCAGGAAGGCGGGCATAAAGCCCTGTCTACCTGCAGCTCCAACATTACTGTTGTGTCCCCTTTTTTGATCCCTGTATTTTCATCTATGTTAGACCTGATTCAAACTTTCCTATTGATAAATTCATGACTGTGTTTTATACAATTATCACATCCATGTTGAATCCATTAATATACACACTGAGAAATTTAGAGGTGAGAATTGCTGTGAAAAAACTCTGGTGTAAAAAC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG008317]] |
Revision as of 13:31, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT021364 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
904 nt |
| Genomic location |
chr11+:55211911..55212814 |
| Exon number |
1 |
| Exons |
55211911..55212814 |
| Genome context |
|
| Sequence |
000001 ATGGGAACAA GTAATAATGT TACAGAATTT GTCCTCCCAG GCCTCTCTCA GGATCCTGAT GTGCAAAAAG CATTATTTGT 000080
000081 AATGTTTTTA CTCACATACA ATGTGACTAT GGTGGGCAAC CTTCTCATTG TGGTGACCAT TATTGCCATC GCCTCCTTGG 000160 000161 ACTCCCCAGT GTCCTTCTTC CTCGCATGCC TGTCATTTAT TGATGCTGTA TATTCCACTT CCTTTTCCCC TAAGTTGATG 000240 000241 ATAGACTTAC TCTGTGATAA AAAAGACTGT TTCTTTCCTG GCTTGCATGG GCCAGCTATT TATAAACTAC CCATTTGGTG 000320 000321 GTATTGAGGT CTTTCTTTTG GTGGGTATGG CCTGTGATCA CTATGTGGAC ATCTGTAAGC TACTGCACTA TTTGACCATC 000400 000401 ATGAACTGGC AGGTTTGCAT CCTCCTGTTT ATGGTGGCTG TGACTGGAGG TTTTTGCATT CTATGTTTCA AATTGTTGTT 000480 000481 GTGTACAGTC TCCCTTTCTG TGGCCCCAAT GTCATTGACC ATTTTGTGAC ATGTACCCAT TATTGGAAAT GGTGTGCACT 000560 000561 GACACTTACT TTATAGGCCT CACTGTGATT GCCAATGGTG GAGCAGTCTG TATGGTCATC TTCATCCTTC TACTAATCTC 000640 000641 CTATGGAGTC ATCCTAAACT CCCTTAAAAC TTATAGTCAG GAAGGCGGGC ATAAAGCCCT GTCTACCTGC AGCTCCAACA 000720 000721 TTACTGTTGT GTCCCCTTTT TTGATCCCTG TATTTTCATC TATGTTAGAC CTGATTCAAA CTTTCCTATT GATAAATTCA 000800 000801 TGACTGTGTT TTATACAATT ATCACATCCA TGTTGAATCC ATTAATATAC ACACTGAGAA ATTTAGAGGT GAGAATTGCT 000880 000881 GTGAAAAAAC TCTGGTGTAA AAAC |
Predicted Small Protein
| Name | NONHSAT021364_smProtein_530:802 |
| Length | 91 |
| Molecular weight | 9769.5631 |
| Aromaticity | 0.1 |
| Instability index | 48.2744444444 |
| Isoelectric point | 4.74908447266 |
| Runs | 16 |
| Runs residual | 0.0379188712522 |
| Runs probability | 0.0295828917152 |
| Amino acid sequence | MYPLLEMVCTDTYFIGLTVIANGGAVCMVIFILLLISYGVILNSLKTYSQEGGHKALSTC SSNITVVSPFLIPVFSSMLDLIQTFLLINS |
| Secondary structure | LLLLEEEEEELLEEEEEEEEELLLEEEHHHHHHHHHHHHHHHHHHHHHLLLLLLEEEEEL LLLEEEELLLEEHHHHHHHHHHHHHHEELL |
| PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLL LLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
| PiMo | ooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiii iiiTTTTTTTTTTTTTTTTTTooooooooo |
