Difference between revisions of "NONHSAT021426"

From LncRNAWiki
Jump to: navigation, search
(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
Line 42: Line 42:
 
sequence = <dnaseq>CCCGTGGGCTTCTCTCTGTGGAAAATGGTGGAGGCTGCTTCTGCCCCAGGAGGGAGAAACACCGACTCCCTGGCTTTGGCGCCAGAAGCCTGGATCGGCTGCCAGGTGACTTCTATTTCTATCTGGTTCTCGTCTGGGGGGGCCCTGGCCGGGCAGCCCCCCAACACTTCTCCTGCCCTGAAACACGGCTCTAGCCAACCTGCTCCGCTGCTTCACCTGCGACCGTCTCTGCGGGGGCTGCACGGCGCCAGCCCCTCCAGCCCACCAGGGCATTGTCCTCCAGCCCGTCATGCCCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCCCCGCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTTATTTCCAAGTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGTGAGTCTACCTCTTTCCTTGTGCGTGTGCTTGTGCTTGTGTGTGAGTGAGTAATTTTCCTCTGTGGAGAAAGGGGGGAATCCATCAGGTGATCTTGTGCCTTCAGTCTTTGCCTCCCCTTTTGCAAAGAGGGTCTCAATCTGAAGTTCTCACATGGGGAGCCGGGGGAGAATTGAAATCATAACGGTGGAAAAAGAAGGCCCAGGCTCTAGTCTTAAAGGGGTGGATTATCAAAGGCAGGGGCTGTCCAGTTCTCTCCAGATGGAAGTTCCCTTGGGCTGTCTGGGGACTGGACTGACAGTGCAACCCCACTGGGTGCTGGGTCCTTCCTGTTTCCTGAGACAGGGTCAACGTGGGTTGCGGGCCAGCTGAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTGTGAGAGCTGCAAAACCACACTGGGCTGGAAATATGAGCAAGCTTTTGAGACGAGCCAGAAGTACAAGGAAGGGAAATACATCATTGAAATGTCACACATGGTGAAGGACAACGGCTGGGACTGAGGGGCTCAGGCAGGGTGTGCCCTTCCTCCGCATGCCCCTCCCTCCCCACGGCCCTGCCAAGCAGTCTATACCAGCATGAGTACTGCCCCACCCCTGGGGGAAACCTGGCTCCAACCAACCCCTCCCCTGCCTCCACCATATCCACTACCAGGCACCCTTTAGAACAGGGGTCTGGGGGTACCCCAGGGGTGTTAAGGCTCAGGAGTGGGCAGCAGTCAGGGAGAGACAGAACTGGGGGAAAGGGATGGTTGTGGGTCTTTCTGTTCCCAAGATCCTGAACATGGAAGCGATGGCAGGGCATAGACTCAGGCAGAGAGGATTGTGGGAGGAATCCGTTTTTGCTCCACCTCTTTTTGAGTGAACAGAGGACAAACCTTGGGTCACAGGGCAAGTAGATCATGGACCACAGAACAGCAGATGAGAAAAGACTTGGGTTGGAGTGAAATTCTGGTCTCAGACACCAGGAGACCAGAGTCTCTGAGGATGAAGTTTCCTACCCCTATTTGTAGGGAAAAGGACTTGAGTGCAGGGAAAACTCAAATCCCAGGCCCTGGGAAATAGTAAAATAATCAAAGGGTTTTCCATTTCACTCCACTTGTTAGTTTATCTTGGCACTGAAGAGGCACTTTCGAGTATCTAACTTTTGCCATTGGGTGGGGTGGGGACAGCTGCTCGCGGAACAGCCCCTAGTCGGCTGCTTCCAGAGTAAGCAGTCTTTATGGGCTTTCTCTGAGGCCCAGTCACTGCTCCTGGGACCCAGTCCCCTGGAGGGGAGGTGGAAAATCAGTGCTACGGGGCCAGTCTTTCCCGTGGCTGCCACCAGCGAATGAAACTTTTGTATGATACATAAAGTGCTTGAGTCTATTTTTAATAAAAAGGGAAAAAGCAACTTGA</dnaseq>|
 
sequence = <dnaseq>CCCGTGGGCTTCTCTCTGTGGAAAATGGTGGAGGCTGCTTCTGCCCCAGGAGGGAGAAACACCGACTCCCTGGCTTTGGCGCCAGAAGCCTGGATCGGCTGCCAGGTGACTTCTATTTCTATCTGGTTCTCGTCTGGGGGGGCCCTGGCCGGGCAGCCCCCCAACACTTCTCCTGCCCTGAAACACGGCTCTAGCCAACCTGCTCCGCTGCTTCACCTGCGACCGTCTCTGCGGGGGCTGCACGGCGCCAGCCCCTCCAGCCCACCAGGGCATTGTCCTCCAGCCCGTCATGCCCAGCTGTGACCCCGGTCCGGGCCCTGCCTGCCTCCCCACCAAGACTTTCCGCAGCTATCTGCCCCGCTGTCACCGCACTTACAGCTGTGTCCACTGCCGTGCACACCTGGCCAAACACGATGAGCTTATTTCCAAGTCCTTCCAAGGGAGCCATGGCCGAGCCTACCTGTTTAACTCCGTGTGAGTCTACCTCTTTCCTTGTGCGTGTGCTTGTGCTTGTGTGTGAGTGAGTAATTTTCCTCTGTGGAGAAAGGGGGGAATCCATCAGGTGATCTTGTGCCTTCAGTCTTTGCCTCCCCTTTTGCAAAGAGGGTCTCAATCTGAAGTTCTCACATGGGGAGCCGGGGGAGAATTGAAATCATAACGGTGGAAAAAGAAGGCCCAGGCTCTAGTCTTAAAGGGGTGGATTATCAAAGGCAGGGGCTGTCCAGTTCTCTCCAGATGGAAGTTCCCTTGGGCTGTCTGGGGACTGGACTGACAGTGCAACCCCACTGGGTGCTGGGTCCTTCCTGTTTCCTGAGACAGGGTCAACGTGGGTTGCGGGCCAGCTGAACAGCGCCTCTTGCTCACGGGGCTCCACTCGGTAGCTGACATTTTCTGTGAGAGCTGCAAAACCACACTGGGCTGGAAATATGAGCAAGCTTTTGAGACGAGCCAGAAGTACAAGGAAGGGAAATACATCATTGAAATGTCACACATGGTGAAGGACAACGGCTGGGACTGAGGGGCTCAGGCAGGGTGTGCCCTTCCTCCGCATGCCCCTCCCTCCCCACGGCCCTGCCAAGCAGTCTATACCAGCATGAGTACTGCCCCACCCCTGGGGGAAACCTGGCTCCAACCAACCCCTCCCCTGCCTCCACCATATCCACTACCAGGCACCCTTTAGAACAGGGGTCTGGGGGTACCCCAGGGGTGTTAAGGCTCAGGAGTGGGCAGCAGTCAGGGAGAGACAGAACTGGGGGAAAGGGATGGTTGTGGGTCTTTCTGTTCCCAAGATCCTGAACATGGAAGCGATGGCAGGGCATAGACTCAGGCAGAGAGGATTGTGGGAGGAATCCGTTTTTGCTCCACCTCTTTTTGAGTGAACAGAGGACAAACCTTGGGTCACAGGGCAAGTAGATCATGGACCACAGAACAGCAGATGAGAAAAGACTTGGGTTGGAGTGAAATTCTGGTCTCAGACACCAGGAGACCAGAGTCTCTGAGGATGAAGTTTCCTACCCCTATTTGTAGGGAAAAGGACTTGAGTGCAGGGAAAACTCAAATCCCAGGCCCTGGGAAATAGTAAAATAATCAAAGGGTTTTCCATTTCACTCCACTTGTTAGTTTATCTTGGCACTGAAGAGGCACTTTCGAGTATCTAACTTTTGCCATTGGGTGGGGTGGGGACAGCTGCTCGCGGAACAGCCCCTAGTCGGCTGCTTCCAGAGTAAGCAGTCTTTATGGGCTTTCTCTGAGGCCCAGTCACTGCTCCTGGGACCCAGTCCCCTGGAGGGGAGGTGGAAAATCAGTGCTACGGGGCCAGTCTTTCCCGTGGCTGCCACCAGCGAATGAAACTTTTGTATGATACATAAAGTGCTTGAGTCTATTTTTAATAAAAAGGGAAAAAGCAACTTGA</dnaseq>|
 
}}
 
}}
[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG008359]]

Revision as of 13:32, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT021426

Source

NONCODE4.0

Same with

,

Classification

sense

Length

1912 nt

Genomic location

chr11-:57412560..57415050

Exon number

4

Exons

57412560..57413543,57413770..57414267,57414440..57414764,57414946..57415050

Genome context

Sequence
000001 CCCGTGGGCT TCTCTCTGTG GAAAATGGTG GAGGCTGCTT CTGCCCCAGG AGGGAGAAAC ACCGACTCCC TGGCTTTGGC 000080
000081 GCCAGAAGCC TGGATCGGCT GCCAGGTGAC TTCTATTTCT ATCTGGTTCT CGTCTGGGGG GGCCCTGGCC GGGCAGCCCC 000160
000161 CCAACACTTC TCCTGCCCTG AAACACGGCT CTAGCCAACC TGCTCCGCTG CTTCACCTGC GACCGTCTCT GCGGGGGCTG 000240
000241 CACGGCGCCA GCCCCTCCAG CCCACCAGGG CATTGTCCTC CAGCCCGTCA TGCCCAGCTG TGACCCCGGT CCGGGCCCTG 000320
000321 CCTGCCTCCC CACCAAGACT TTCCGCAGCT ATCTGCCCCG CTGTCACCGC ACTTACAGCT GTGTCCACTG CCGTGCACAC 000400
000401 CTGGCCAAAC ACGATGAGCT TATTTCCAAG TCCTTCCAAG GGAGCCATGG CCGAGCCTAC CTGTTTAACT CCGTGTGAGT 000480
000481 CTACCTCTTT CCTTGTGCGT GTGCTTGTGC TTGTGTGTGA GTGAGTAATT TTCCTCTGTG GAGAAAGGGG GGAATCCATC 000560
000561 AGGTGATCTT GTGCCTTCAG TCTTTGCCTC CCCTTTTGCA AAGAGGGTCT CAATCTGAAG TTCTCACATG GGGAGCCGGG 000640
000641 GGAGAATTGA AATCATAACG GTGGAAAAAG AAGGCCCAGG CTCTAGTCTT AAAGGGGTGG ATTATCAAAG GCAGGGGCTG 000720
000721 TCCAGTTCTC TCCAGATGGA AGTTCCCTTG GGCTGTCTGG GGACTGGACT GACAGTGCAA CCCCACTGGG TGCTGGGTCC 000800
000801 TTCCTGTTTC CTGAGACAGG GTCAACGTGG GTTGCGGGCC AGCTGAACAG CGCCTCTTGC TCACGGGGCT CCACTCGGTA 000880
000881 GCTGACATTT TCTGTGAGAG CTGCAAAACC ACACTGGGCT GGAAATATGA GCAAGCTTTT GAGACGAGCC AGAAGTACAA 000960
000961 GGAAGGGAAA TACATCATTG AAATGTCACA CATGGTGAAG GACAACGGCT GGGACTGAGG GGCTCAGGCA GGGTGTGCCC 001040
001041 TTCCTCCGCA TGCCCCTCCC TCCCCACGGC CCTGCCAAGC AGTCTATACC AGCATGAGTA CTGCCCCACC CCTGGGGGAA 001120
001121 ACCTGGCTCC AACCAACCCC TCCCCTGCCT CCACCATATC CACTACCAGG CACCCTTTAG AACAGGGGTC TGGGGGTACC 001200
001201 CCAGGGGTGT TAAGGCTCAG GAGTGGGCAG CAGTCAGGGA GAGACAGAAC TGGGGGAAAG GGATGGTTGT GGGTCTTTCT 001280
001281 GTTCCCAAGA TCCTGAACAT GGAAGCGATG GCAGGGCATA GACTCAGGCA GAGAGGATTG TGGGAGGAAT CCGTTTTTGC 001360
001361 TCCACCTCTT TTTGAGTGAA CAGAGGACAA ACCTTGGGTC ACAGGGCAAG TAGATCATGG ACCACAGAAC AGCAGATGAG 001440
001441 AAAAGACTTG GGTTGGAGTG AAATTCTGGT CTCAGACACC AGGAGACCAG AGTCTCTGAG GATGAAGTTT CCTACCCCTA 001520
001521 TTTGTAGGGA AAAGGACTTG AGTGCAGGGA AAACTCAAAT CCCAGGCCCT GGGAAATAGT AAAATAATCA AAGGGTTTTC 001600
001601 CATTTCACTC CACTTGTTAG TTTATCTTGG CACTGAAGAG GCACTTTCGA GTATCTAACT TTTGCCATTG GGTGGGGTGG 001680
001681 GGACAGCTGC TCGCGGAACA GCCCCTAGTC GGCTGCTTCC AGAGTAAGCA GTCTTTATGG GCTTTCTCTG AGGCCCAGTC 001760
001761 ACTGCTCCTG GGACCCAGTC CCCTGGAGGG GAGGTGGAAA ATCAGTGCTA CGGGGCCAGT CTTTCCCGTG GCTGCCACCA 001840
001841 GCGAATGAAA CTTTTGTATG ATACATAAAG TGCTTGAGTC TATTTTTAAT AAAAAGGGAA AAAGCAACTT GA
[back to top]

Predicted Small Protein

Name NONHSAT021426_smProtein_1262:1378
Length 39
Molecular weight 4310.0747
Aromaticity 0.0789473684211
Instability index 56.5710526316
Isoelectric point 6.54669189453
Runs 7
Runs residual 0.0115997229917
Runs probability 0.0176142529084
Amino acid sequence MVVGLSVPKILNMEAMAGHRLRQRGLWEESVFAPPLFE
Secondary structure LEEELLLHHHHHHHHHHHHHHHHLLLLLLEEELLLLLL
PRMN -
PiMo -