Difference between revisions of "ENST00000366397.3"
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sequence = <dnaseq>CATCTCTTTTGCATTTTTTTTCCTTTGTGAGGTAAAGCAGCATTTTCCTGGCTACTCTGACTTTGCTCATGAGAAATAGTCTCATTACTATGAATGAAATGTGTGGGGATCTGATCTCTTCTAACAGCTCAGGAGTCTTTTTTTCTGAGATAGGGTTTCTCTCTGTTGCCTAGGCTGGAGTACAGTGGTGTGATCATGGCTAACTGTAGCCTCGAACTCCTGGGCTCAAGTCATCCTCCTGCCTCAGCCTCCCGATAGCTGGGATTAAAGGTGCCTGCCACCACACTCAGCTAATTTTTGTATTTTTAGTAGACATGGGGTTTCACCACATTGGCCACGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTAGCATCGTATTTTTGAGGTTAGCCTTGCCTATTTAAAAATGTTTTGATATCTTTTTAAATCTATGGGTTCCCCCTCCACCCCTTTCTTTCAAGTTATCTGTTGAAGAAGTTGGG</dnaseq>| | sequence = <dnaseq>CATCTCTTTTGCATTTTTTTTCCTTTGTGAGGTAAAGCAGCATTTTCCTGGCTACTCTGACTTTGCTCATGAGAAATAGTCTCATTACTATGAATGAAATGTGTGGGGATCTGATCTCTTCTAACAGCTCAGGAGTCTTTTTTTCTGAGATAGGGTTTCTCTCTGTTGCCTAGGCTGGAGTACAGTGGTGTGATCATGGCTAACTGTAGCCTCGAACTCCTGGGCTCAAGTCATCCTCCTGCCTCAGCCTCCCGATAGCTGGGATTAAAGGTGCCTGCCACCACACTCAGCTAATTTTTGTATTTTTAGTAGACATGGGGTTTCACCACATTGGCCACGCTGGTCTCGAACTCCTGACCTCAAGTGATCTGCCTGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGTGTGAGCCACTGCGCCTGGCCTAGCATCGTATTTTTGAGGTTAGCCTTGCCTATTTAAAAATGTTTTGATATCTTTTTAAATCTATGGGTTCCCCCTCCACCCCTTTCTTTCAAGTTATCTGTTGAAGAAGTTGGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(AS)]][[Category:lnc-P2RY4-1]] | + | [[Category:Intronic(AS)]][[Category:lnc-P2RY4-1]][[Category:NONHSAG054692]] |
Revision as of 13:36, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000366397.3 |
| Source |
Gencode19 |
| Same with |
lnc-P2RY4-1:1,NONHSAT137400 |
| Classification |
intronic(AS) |
| Length |
542 nt |
| Genomic location |
chrX-:69383692..69385056 |
| Exon number |
2 |
| Exons |
69383692..69383978,69384802..69385056 |
| Genome context |
|
| Sequence |
000001 CATCTCTTTT GCATTTTTTT TCCTTTGTGA GGTAAAGCAG CATTTTCCTG GCTACTCTGA CTTTGCTCAT GAGAAATAGT 000080
000081 CTCATTACTA TGAATGAAAT GTGTGGGGAT CTGATCTCTT CTAACAGCTC AGGAGTCTTT TTTTCTGAGA TAGGGTTTCT 000160 000161 CTCTGTTGCC TAGGCTGGAG TACAGTGGTG TGATCATGGC TAACTGTAGC CTCGAACTCC TGGGCTCAAG TCATCCTCCT 000240 000241 GCCTCAGCCT CCCGATAGCT GGGATTAAAG GTGCCTGCCA CCACACTCAG CTAATTTTTG TATTTTTAGT AGACATGGGG 000320 000321 TTTCACCACA TTGGCCACGC TGGTCTCGAA CTCCTGACCT CAAGTGATCT GCCTGCCTCG GCCTCCCAAA GTGCTGGGAT 000400 000401 TACAGGTGTG AGCCACTGCG CCTGGCCTAG CATCGTATTT TTGAGGTTAG CCTTGCCTAT TTAAAAATGT TTTGATATCT 000480 000481 TTTTAAATCT ATGGGTTCCC CCTCCACCCC TTTCTTTCAA GTTATCTGTT GAAGAAGTTG GG |
Predicted Small Protein
| Name | ENST00000366397.3_smProtein_314:463 |
| Length | 50 |
| Molecular weight | 5067.7992 |
| Aromaticity | 0.0612244897959 |
| Instability index | 50.0469387755 |
| Isoelectric point | 6.36297607422 |
| Runs | 7 |
| Runs residual | 0.019194704909 |
| Runs probability | 0.0268629974513 |
| Amino acid sequence | MGFHHIGHAGLELLTSSDLPASASQSAGITGVSHCAWPSIVFLRLALPI |
| Secondary structure | LLLLLLLLLLLEELLLLLLLLLLLLLLLLLLEELLLHHHHHHHHHHLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
| PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTii |
