Difference between revisions of "ENST00000561386.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTTTCATAATTTGTTCTAGGGCTATGGAGATGCTCATAAAGGATTCTCATTCCTATTGTAAGCCAGAGAGAATGCAATCCAATGCAATGTTTCGATCATGGAGTCTTTATTGGACACAGGCTGGCATGAGTTGATGGCACCTGAAAATCAGCAAGCTACAAATGCTCCTGGGAGGAACAGCATCTTCAGTCTCTAAACCTTGGTGCAGCTGAGTTTATTAGAGGTTTTCCAGACCTTAACAAGAGCCTGTGACAGTACTAAGACCCTGGGGATGGTGCGAAGGAGTCTGGAACCAGGAGGCTGCTGCGTTTTACAGGATACTGGAGCCCAGTTCTCAATCAAACGCTAGAGCTCAGAAAGACATGCCTCTCAGATCTGTCTACCTTTAAGCATTTTTTTAATTAATAACTGGATATTGACCATTAAAACCATCACAGGTATAGGAGTTTGTTGACTAAAATTTGTATTATAGATACAACTGAAATGTTTACAAATCTTTATAAGAAAATCATTACTACTTGGGTCAGAAGCAATGCAAGTCAAGCTTAGGTCTATGGTTTTTGCTCCTGATCAGTAATATGTAGATGGCATGTGTTCTCTTACCCTCTCTAAATCTGGAAAGATGCATTTCATAGTACCTCTAATCTCAAAAATTTTAACTTTCACTTTTAATTGTTGAAAATGTCATTCTGAAATCCAACAATGAATGAGTGAATGTGTATATATTCATCATATACTTGTACACACACACACAAATAAAACCTGTATCTCACGGCCCACATATCTTGCTTAAGCTGCTCTTTCAGGAAGATTTATGACACTCTGCTTCACAAAGAAAGTTTAAAAGAGAGAAAGAAAACGAAATGAAACAGTGACTGTTCCCTAGTGCAATTACTCTGTCAAATACTCCCCTAGGGAAAGGAATTTGCTCTTATTGTGAAATAAATTAATATAGAAACCAGA</dnaseq>| | sequence = <dnaseq>CTTTCATAATTTGTTCTAGGGCTATGGAGATGCTCATAAAGGATTCTCATTCCTATTGTAAGCCAGAGAGAATGCAATCCAATGCAATGTTTCGATCATGGAGTCTTTATTGGACACAGGCTGGCATGAGTTGATGGCACCTGAAAATCAGCAAGCTACAAATGCTCCTGGGAGGAACAGCATCTTCAGTCTCTAAACCTTGGTGCAGCTGAGTTTATTAGAGGTTTTCCAGACCTTAACAAGAGCCTGTGACAGTACTAAGACCCTGGGGATGGTGCGAAGGAGTCTGGAACCAGGAGGCTGCTGCGTTTTACAGGATACTGGAGCCCAGTTCTCAATCAAACGCTAGAGCTCAGAAAGACATGCCTCTCAGATCTGTCTACCTTTAAGCATTTTTTTAATTAATAACTGGATATTGACCATTAAAACCATCACAGGTATAGGAGTTTGTTGACTAAAATTTGTATTATAGATACAACTGAAATGTTTACAAATCTTTATAAGAAAATCATTACTACTTGGGTCAGAAGCAATGCAAGTCAAGCTTAGGTCTATGGTTTTTGCTCCTGATCAGTAATATGTAGATGGCATGTGTTCTCTTACCCTCTCTAAATCTGGAAAGATGCATTTCATAGTACCTCTAATCTCAAAAATTTTAACTTTCACTTTTAATTGTTGAAAATGTCATTCTGAAATCCAACAATGAATGAGTGAATGTGTATATATTCATCATATACTTGTACACACACACACAAATAAAACCTGTATCTCACGGCCCACATATCTTGCTTAAGCTGCTCTTTCAGGAAGATTTATGACACTCTGCTTCACAAAGAAAGTTTAAAAGAGAGAAAGAAAACGAAATGAAACAGTGACTGTTCCCTAGTGCAATTACTCTGTCAAATACTCCCCTAGGGAAAGGAATTTGCTCTTATTGTGAAATAAATTAATATAGAAACCAGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000259284.1]] |
Revision as of 13:39, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000561386.1 |
Source |
Gencode19 |
Same with |
lnc-C2CD4A-3:1 |
Classification |
intergenic |
Length |
963 nt |
Genomic location |
chr15+:62022049..62023588 |
Exon number |
2 |
Exons |
62022049..62022203,62022781..62023588 |
Genome context |
|
Sequence |
000001 CTTTCATAAT TTGTTCTAGG GCTATGGAGA TGCTCATAAA GGATTCTCAT TCCTATTGTA AGCCAGAGAG AATGCAATCC 000080
000081 AATGCAATGT TTCGATCATG GAGTCTTTAT TGGACACAGG CTGGCATGAG TTGATGGCAC CTGAAAATCA GCAAGCTACA 000160 000161 AATGCTCCTG GGAGGAACAG CATCTTCAGT CTCTAAACCT TGGTGCAGCT GAGTTTATTA GAGGTTTTCC AGACCTTAAC 000240 000241 AAGAGCCTGT GACAGTACTA AGACCCTGGG GATGGTGCGA AGGAGTCTGG AACCAGGAGG CTGCTGCGTT TTACAGGATA 000320 000321 CTGGAGCCCA GTTCTCAATC AAACGCTAGA GCTCAGAAAG ACATGCCTCT CAGATCTGTC TACCTTTAAG CATTTTTTTA 000400 000401 ATTAATAACT GGATATTGAC CATTAAAACC ATCACAGGTA TAGGAGTTTG TTGACTAAAA TTTGTATTAT AGATACAACT 000480 000481 GAAATGTTTA CAAATCTTTA TAAGAAAATC ATTACTACTT GGGTCAGAAG CAATGCAAGT CAAGCTTAGG TCTATGGTTT 000560 000561 TTGCTCCTGA TCAGTAATAT GTAGATGGCA TGTGTTCTCT TACCCTCTCT AAATCTGGAA AGATGCATTT CATAGTACCT 000640 000641 CTAATCTCAA AAATTTTAAC TTTCACTTTT AATTGTTGAA AATGTCATTC TGAAATCCAA CAATGAATGA GTGAATGTGT 000720 000721 ATATATTCAT CATATACTTG TACACACACA CACAAATAAA ACCTGTATCT CACGGCCCAC ATATCTTGCT TAAGCTGCTC 000800 000801 TTTCAGGAAG ATTTATGACA CTCTGCTTCA CAAAGAAAGT TTAAAAGAGA GAAAGAAAAC GAAATGAAAC AGTGACTGTT 000880 000881 CCCTAGTGCA ATTACTCTGT CAAATACTCC CCTAGGGAAA GGAATTTGCT CTTATTGTGA AATAAATTAA TATAGAAACC 000960 000961 AGA |
Predicted Small Protein
Name | ENST00000561386.1_smProtein_23:133 |
Length | 37 |
Molecular weight | 4331.9727 |
Aromaticity | 0.138888888889 |
Instability index | 40.8194444444 |
Isoelectric point | 7.93963623047 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0207030559972 |
Amino acid sequence | MEMLIKDSHSYCKPERMQSNAMFRSWSLYWTQAGMS |
Secondary structure | LEEEELLLLLLLLHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |