Difference between revisions of "NONHSAT021823"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>CTCTACCCACAACTCCCCGGGGTCGCATGCGGTCAACGTATGCGCGTGCGCTCGCCGTAGCCCCGCCCCCAAATCCCGTGGGCCTCTGCGGCATGGTATTTAATCGTCTCCCCGGGGAGATTCGTTCTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTTTTTCTTTTATTTTCTTTTGAGCGATTGTGCGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAAAGTAGCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTTCGAAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTATGCTCTTACAGAGGAGACCTTGTAGATAACCACTCCATGATGAACACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGAAGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACTATTTTTAGGTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTTTTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTTTCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCCATATATCGATCACGTTACTGTCAGATGATTTGAATTGATAAGCTGATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTTGTTTATGAATAAGCTTCATTCCATCCTAATACCTTAAAATAACTAATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTTAGTTGATATTTTTTGTTCCTTACAGCTTATGCCACCAAGTAGGCAGTTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATGAACACCTGAGAAACTGGAGAACGCAGGGAGTGGGGGGTAACCATGTCTGAGGAATCTTTCACCCACAGCTTTGTTTTTCTCTAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTACATGGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACTCTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCACTACTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCTATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAACCACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAAACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTGAGTAAACCTAAATGTAAGGTGGACTATGCTAAAAATTCCCAATGAAGAAACTTTCACATGTCTTACTCTCTGTCCTAGTCCCAGAGCCTGTAAAGGTGAACCCACTGGGACTGGCTGGGGGAGAAGAGGAAGATTTGTTCCAGAAGGAACTGTCTGAGGGATGATAAAGATTTCTATACAGAGAAAGGGAGTAATCATCACTTGTTGAAAACATTGGTTTTATTTTTTCCAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAATTTTCCAAGTTCTTGGACAACCTAGCTGTTGAAAAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACACTGGGAGCCAATGAAACAGCAGTTGAGGGTTTGCTGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCCCttttgttttttagatacaagggcttggttttgttacccaggctggtttcaaggccatagctttaagagatcctctcaccacagatttccaaagtgctgggattgcaggtgtgattcatggcacccagACTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGCCTTTAGGTCTCCATTTGCATATTGCAAATACTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAGCATCAGTGTGTAA</dnaseq>| | sequence = <dnaseq>CTCTACCCACAACTCCCCGGGGTCGCATGCGGTCAACGTATGCGCGTGCGCTCGCCGTAGCCCCGCCCCCAAATCCCGTGGGCCTCTGCGGCATGGTATTTAATCGTCTCCCCGGGGAGATTCGTTCTCATTTTTCTACTGCTCGTGGTAAGTGGCTTCGTGGTCTTTATAGCTGTTACTCTTTTGTACTTTGTCTTTTTCTTTTATTTTCTTTTGAGCGATTGTGCGAACATAGCATAGCACGCACTATGCCTTCTGTGTTGTAGCTGCCTGGCCAGGGCGACTGGCGGATAAGGTCTTGTGCGTGGCCTCGAGGCTTAAAAGTAGCAGTGGGGCTTTGTGAAGGACAAAATGGCGATGGCGGGCCGTGTAGGTCCCCCTTCCTATGATGAGGACCTTTTCACAGACCTGTACTGAGCTCCGTGAGGATAAATAACTCTGAGGAGATGGGCCCTGCAAGCCTCTTGCTTAGCCGTCTGTTCAGAAAATAGCGTTTTCGAAATGCCCTGAGTTGACCTAATGTCTTATTGGGCTCCTGTCTGCAGGATTTACGCGCACGTTGGAACCGAAGAGAGCTCTGTTGTTGCAATGTTCAGCCCACAAGAGCTTACTGGTGAAGGAATGGGACAAGACCCATCTTTATGCAAAGCCAGCGTTACAGTAATGTTCCAGGTAGGTGTACATGGTTTATGCTCTTACAGAGGAGACCTTGTAGATAACCACTCCATGATGAACACAAAATGACAAGCATATGGCTGAACTTTCAAGTGATGTCATCTTACTACTGAGAAGTGAGAGAGAGGTCTTAAGGGGTCTTTGAATGACTATTTTTAGGTACATAAAATGCTTTCCTCTGTTGTCTACAGCATCTCATAATCTATCCTGGGGAATTCAGCTGCCTCCCAGGGTGAATACAGGTAATTATCCAAATTGGTGTATGTCATCTTTGTAAATGTTCAAGAAAACAAGTGGCCGGCGGAACAATGTTTTTTGGCGCCTTCCATCTTGTTCCTCTTGAAATGATTTTCTGGGGAGGGAGATCGCAACCCGGTACTACAGTTCTTGTAAGGGTGTGCTGTTACCCTCATCCATATATCGATCACGTTACTGTCAGATGATTTGAATTGATAAGCTGATGTTCTGTGAGGTACAAAAGTTAATAGCATGTTAGAGTTCTGATGGCAGTTGTTGTTTATGAATAAGCTTCATTCCATCCTAATACCTTAAAATAACTAATTTGCTTTCCTTTCCAGGTATTCCTGATGACAGTCTGCCTCTATCTTACAGAGCAGCTTGTTGCTATATACCATTGAAAAGCCTTCAGAGCTGAGAGGTTAGTTGATATTTTTTGTTCCTTACAGCTTATGCCACCAAGTAGGCAGTTTCTATGATGAATCAAACTAGCTCACTATGACCGACAGTGAAAATACATGAACACCTGAGAAACTGGAGAACGCAGGGAGTGGGGGGTAACCATGTCTGAGGAATCTTTCACCCACAGCTTTGTTTTTCTCTAGGTACTACTAACCAATAACCTGCTTGGCTCAAAGGTGAGTAATTTCACGGTATTCAATGCACTCAGTATATAGGGTAGGAAAAAGTGCCTTTTTAGGCCTGTGTTTGTGATGACTTACATGGAATCTCGTTCGGCTGATGACTTGCTGTTGAGACTCTGAAATCTGATTTTCTGAGAATGATGGGTGGGAACAACATAATGCGGGATATGAGAAGCACTACTGACTTGGTCTTCCTCCTTTCAGGGCCAGCACCTTCTCTCTAAAGCCCAAGAGGAGTTTGAGGTAAATGGCTTTGCAATAGTTACCATCAATGGCTGCTATATAAAATTTTCTGTGATTTTTGTGTGTGATAGCACTGTGGTCTGGGTGAATGTACACAGACATAACTGGCTTAACCCAAAGTCTTTGATCTCCTGAACCACCAGTGATGAATTGCTGCTCACCAGTGATGAGTTGAATACCGCCCCAGTCTGATCAATGTGTGACTGAAAGGTATTTTCTGAGCTGTGAGCCTGCCTTCCAGTGACATGTTCTAAAAATTGCAAGTTATTTGAGGAGGCTTTACAGCCAATAGGAAGTTCTTGGGCTAAGTAGTGTTTCCTATAAAATGTGCCCTGAAACTTCTTTCTGCCAAGCAATAGATACAATTGAGAGATTGTAAAATGTGACATAGAATGAAAGTCTCTCAAGACTACATTTTTCTTTCTTGATTTTGCAGGAAAACTAGGTGTCTGTGTTCACTCCAGGCTGAAGTTACAGGTGAGTAAACCTAAATGTAAGGTGGACTATGCTAAAAATTCCCAATGAAGAAACTTTCACATGTCTTACTCTCTGTCCTAGTCCCAGAGCCTGTAAAGGTGAACCCACTGGGACTGGCTGGGGGAGAAGAGGAAGATTTGTTCCAGAAGGAACTGTCTGAGGGATGATAAAGATTTCTATACAGAGAAAGGGAGTAATCATCACTTGTTGAAAACATTGGTTTTATTTTTTCCAGGTCTGAGCAAATAAGGTGTATAAAAAATGGAATCTGTCTTGGAGGACATCAGAAGGTGAATTTTCCAAGTTCTTGGACAACCTAGCTGTTGAAAAGCTTTCTGGGTTTGGGGGGTATTTCAGATGTACCTTAAAGTGTTAGCAGACACAGATTAAGACACTGGGAGCCAATGAAACAGCAGTTGAGGGTTTGCTGTGTATCACATTTCTGTATTTTATCACCCCCTTCCTGCAACATTATTTATCTGGAATCTACCTGCCCttttgttttttagatacaagggcttggttttgttacccaggctggtttcaaggccatagctttaagagatcctctcaccacagatttccaaagtgctgggattgcaggtgtgattcatggcacccagACTTTGCTGCCTTTCTTACATGATCCAGGCCCAGAACCCAAACTCAGGCACTGTATAGATGACCACTTTCGTAAACTACTGACCTAGCTTGTTGCCAATTGTTGATTGAACTTCCCATAACTCCACTTCGTGTCTGTTCCTCTGTATACAGCCACCTTCTGTTCCCGTCATGAGCCTTTAGGTCTCCATTTGCATATTGCAAATACTATGTTCCATGTAGGTAGCTCATTCAGGGCCTTGCTCTTCACTTCAAAAAAGGTTCCCTTGAGGACTGGCTGTCAATTTGTGTTGCTGTGTTGGTTGTTGATGAAAATAATAAAATGATTGATTACATAGTCCTGTTTACTTTTTTTGTGTGTATGTGTCTCTTAGCATCAGTGTGTAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG008552]] |
Revision as of 13:43, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT021823 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
3284 nt |
| Genomic location |
chr11-:62619410..62623483 |
| Exon number |
4 |
| Exons |
62619410..62620153,62620283..62621536,62621991..62622688,62622896..62623483 |
| Genome context |
|
| Sequence |
000001 CTCTACCCAC AACTCCCCGG GGTCGCATGC GGTCAACGTA TGCGCGTGCG CTCGCCGTAG CCCCGCCCCC AAATCCCGTG 000080
000081 GGCCTCTGCG GCATGGTATT TAATCGTCTC CCCGGGGAGA TTCGTTCTCA TTTTTCTACT GCTCGTGGTA AGTGGCTTCG 000160 000161 TGGTCTTTAT AGCTGTTACT CTTTTGTACT TTGTCTTTTT CTTTTATTTT CTTTTGAGCG ATTGTGCGAA CATAGCATAG 000240 000241 CACGCACTAT GCCTTCTGTG TTGTAGCTGC CTGGCCAGGG CGACTGGCGG ATAAGGTCTT GTGCGTGGCC TCGAGGCTTA 000320 000321 AAAGTAGCAG TGGGGCTTTG TGAAGGACAA AATGGCGATG GCGGGCCGTG TAGGTCCCCC TTCCTATGAT GAGGACCTTT 000400 000401 TCACAGACCT GTACTGAGCT CCGTGAGGAT AAATAACTCT GAGGAGATGG GCCCTGCAAG CCTCTTGCTT AGCCGTCTGT 000480 000481 TCAGAAAATA GCGTTTTCGA AATGCCCTGA GTTGACCTAA TGTCTTATTG GGCTCCTGTC TGCAGGATTT ACGCGCACGT 000560 000561 TGGAACCGAA GAGAGCTCTG TTGTTGCAAT GTTCAGCCCA CAAGAGCTTA CTGGTGAAGG AATGGGACAA GACCCATCTT 000640 000641 TATGCAAAGC CAGCGTTACA GTAATGTTCC AGGTAGGTGT ACATGGTTTA TGCTCTTACA GAGGAGACCT TGTAGATAAC 000720 000721 CACTCCATGA TGAACACAAA ATGACAAGCA TATGGCTGAA CTTTCAAGTG ATGTCATCTT ACTACTGAGA AGTGAGAGAG 000800 000801 AGGTCTTAAG GGGTCTTTGA ATGACTATTT TTAGGTACAT AAAATGCTTT CCTCTGTTGT CTACAGCATC TCATAATCTA 000880 000881 TCCTGGGGAA TTCAGCTGCC TCCCAGGGTG AATACAGGTA ATTATCCAAA TTGGTGTATG TCATCTTTGT AAATGTTCAA 000960 000961 GAAAACAAGT GGCCGGCGGA ACAATGTTTT TTGGCGCCTT CCATCTTGTT CCTCTTGAAA TGATTTTCTG GGGAGGGAGA 001040 001041 TCGCAACCCG GTACTACAGT TCTTGTAAGG GTGTGCTGTT ACCCTCATCC ATATATCGAT CACGTTACTG TCAGATGATT 001120 001121 TGAATTGATA AGCTGATGTT CTGTGAGGTA CAAAAGTTAA TAGCATGTTA GAGTTCTGAT GGCAGTTGTT GTTTATGAAT 001200 001201 AAGCTTCATT CCATCCTAAT ACCTTAAAAT AACTAATTTG CTTTCCTTTC CAGGTATTCC TGATGACAGT CTGCCTCTAT 001280 001281 CTTACAGAGC AGCTTGTTGC TATATACCAT TGAAAAGCCT TCAGAGCTGA GAGGTTAGTT GATATTTTTT GTTCCTTACA 001360 001361 GCTTATGCCA CCAAGTAGGC AGTTTCTATG ATGAATCAAA CTAGCTCACT ATGACCGACA GTGAAAATAC ATGAACACCT 001440 001441 GAGAAACTGG AGAACGCAGG GAGTGGGGGG TAACCATGTC TGAGGAATCT TTCACCCACA GCTTTGTTTT TCTCTAGGTA 001520 001521 CTACTAACCA ATAACCTGCT TGGCTCAAAG GTGAGTAATT TCACGGTATT CAATGCACTC AGTATATAGG GTAGGAAAAA 001600 001601 GTGCCTTTTT AGGCCTGTGT TTGTGATGAC TTACATGGAA TCTCGTTCGG CTGATGACTT GCTGTTGAGA CTCTGAAATC 001680 001681 TGATTTTCTG AGAATGATGG GTGGGAACAA CATAATGCGG GATATGAGAA GCACTACTGA CTTGGTCTTC CTCCTTTCAG 001760 001761 GGCCAGCACC TTCTCTCTAA AGCCCAAGAG GAGTTTGAGG TAAATGGCTT TGCAATAGTT ACCATCAATG GCTGCTATAT 001840 001841 AAAATTTTCT GTGATTTTTG TGTGTGATAG CACTGTGGTC TGGGTGAATG TACACAGACA TAACTGGCTT AACCCAAAGT 001920 001921 CTTTGATCTC CTGAACCACC AGTGATGAAT TGCTGCTCAC CAGTGATGAG TTGAATACCG CCCCAGTCTG ATCAATGTGT 002000 002001 GACTGAAAGG TATTTTCTGA GCTGTGAGCC TGCCTTCCAG TGACATGTTC TAAAAATTGC AAGTTATTTG AGGAGGCTTT 002080 002081 ACAGCCAATA GGAAGTTCTT GGGCTAAGTA GTGTTTCCTA TAAAATGTGC CCTGAAACTT CTTTCTGCCA AGCAATAGAT 002160 002161 ACAATTGAGA GATTGTAAAA TGTGACATAG AATGAAAGTC TCTCAAGACT ACATTTTTCT TTCTTGATTT TGCAGGAAAA 002240 002241 CTAGGTGTCT GTGTTCACTC CAGGCTGAAG TTACAGGTGA GTAAACCTAA ATGTAAGGTG GACTATGCTA AAAATTCCCA 002320 002321 ATGAAGAAAC TTTCACATGT CTTACTCTCT GTCCTAGTCC CAGAGCCTGT AAAGGTGAAC CCACTGGGAC TGGCTGGGGG 002400 002401 AGAAGAGGAA GATTTGTTCC AGAAGGAACT GTCTGAGGGA TGATAAAGAT TTCTATACAG AGAAAGGGAG TAATCATCAC 002480 002481 TTGTTGAAAA CATTGGTTTT ATTTTTTCCA GGTCTGAGCA AATAAGGTGT ATAAAAAATG GAATCTGTCT TGGAGGACAT 002560 002561 CAGAAGGTGA ATTTTCCAAG TTCTTGGACA ACCTAGCTGT TGAAAAGCTT TCTGGGTTTG GGGGGTATTT CAGATGTACC 002640 002641 TTAAAGTGTT AGCAGACACA GATTAAGACA CTGGGAGCCA ATGAAACAGC AGTTGAGGGT TTGCTGTGTA TCACATTTCT 002720 002721 GTATTTTATC ACCCCCTTCC TGCAACATTA TTTATCTGGA ATCTACCTGC CCttttgttt tttagataca agggcttggt 002800 002801 tttgttaccc aggctggttt caaggccata gctttaagag atcctctcac cacagatttc caaagtgctg ggattgcagg 002880 002881 tgtgattcat ggcacccagA CTTTGCTGCC TTTCTTACAT GATCCAGGCC CAGAACCCAA ACTCAGGCAC TGTATAGATG 002960 002961 ACCACTTTCG TAAACTACTG ACCTAGCTTG TTGCCAATTG TTGATTGAAC TTCCCATAAC TCCACTTCGT GTCTGTTCCT 003040 003041 CTGTATACAG CCACCTTCTG TTCCCGTCAT GAGCCTTTAG GTCTCCATTT GCATATTGCA AATACTATGT TCCATGTAGG 003120 003121 TAGCTCATTC AGGGCCTTGC TCTTCACTTC AAAAAAGGTT CCCTTGAGGA CTGGCTGTCA ATTTGTGTTG CTGTGTTGGT 003200 003201 TGTTGATGAA AATAATAAAA TGATTGATTA CATAGTCCTG TTTACTTTTT TTGTGTGTAT GTGTCTCTTA GCATCAGTGT 003280 003281 GTAA |
Predicted Small Protein
| Name | NONHSAT021823_smProtein_26:265 |
| Length | 80 |
| Molecular weight | 8911.4799 |
| Aromaticity | 0.126582278481 |
| Instability index | 48.3481012658 |
| Isoelectric point | 9.78570556641 |
| Runs | 9 |
| Runs residual | 0.0263568579851 |
| Runs probability | 0.0638089069462 |
| Amino acid sequence | MRSTYARALAVAPPPNPVGLCGMVFNRLPGEIRSHFSTARGKWLRGLYSCYSFVLCLFLL FSFERLCEHSIARTMPSVL |
| Secondary structure | LLLHHHHHHHLLLLLLLLEEEEEELLLLLLHHHHHLLLLLLHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTTooooooooooooooo |
