Difference between revisions of "Lnc-MTHFSD-2:8"

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sequence = <dnaseq>GACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGGCAAGAGGCCATGGGAAGGGACGGAGGTGGAACAGGACTGGACAGAAGCTGATAAATGGTTGTTGCTGAGTACTGGGCAGATAGGGGTTGGTTATCCTATTGTCTTTACTTTCATATATTTTATTTTTTCTGTAATAAAACAAATTAAAATCACCTGTCGTGACCTCACAGGGGCCAGTGTGGGTTGTGGCGTGAGGCAGGAAGCTCTGCAGAGTTCCTTGGTCAAAAGGATTAATTACAAAAGAACTCCATGAACACCGAGAAGAAGAGAAGGGAATCCTGGCATTTAAAGCCACAAAGAAACTTGATATGGTCTTGTCTCCTTCTCTCAATTGACAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGTAAACTTTTTATTGAAACATCACATACACACAGAGACGTCCACCAATTGGCTCGATGAGCTTTCTCAAAGGAAACACATTCTCTGAGCAGTGTGCACATCCAGACACATCATCTCCATCCTCCAGAAGCCCCCTCCTGTTATCGCCACTCACAGGTCACCCGTCTCCTGACTTGCAGCCACAGAGATAGTCCTGCCTAATTCTGAACGTGGTACAAACGGAATCATACAGAATGGGCTTGGCTTCTTTCACTCTGGGCTGTGTTTATGAGCATCACCCAGATTGCTGCATGGAAGCCATCGTTTGTTCATTTTCACCACCATAGAGTATTCTACTGTTGATGGGACATAGGCTATTTATTCCTTCTACTGTTGAGGGACGCATAGTTATTTCCAGCTGGAGACTGGTATATGTCTCTTGGCTACCTTCTGCATGCATTTCTGTTGGAGGTTGTTTCAGGTATCTCTTAACGTATAACAGACCACCCTCAAATTGAGTCCTTGAAACAATTACCATTTTCTTCTTTCTCAGGATTTGGTGCATGGGATGGGCTCAGTTGGGCAGTTCTTCTGTTCCATGTGATGGTACTGGGGCTGCAGTCATTCAGAGGCTCAACTGGGCTGAACGTGCAAGGTTTCTTGCTCACGTGGCCATCAGTGGTGCTGGCTGCTGTTGGGAGCTCCACTGGACTTCTGTCCAGAGCTCCTCAGCTCACCTCTCTGTATCCTTGCCCTGTGGCTCAGGCTTCTAACAATACAGAGGCTGGATTCCAAGAGGAGGGAATTAGAAGCGTTCAGCCTTCTTAAGACCAGGATTCAGATGTCCCAGACTGTCACTGTATTGACCGGAGCATTTACAGGCCAGCCTAGTAATTTTTCCATCTTGGGCAGGAATGGGTGGCATATGCTGGGGGTAGGGGTAGCATTGTTGGGGATCATCTTTGGAGCTGTGTGCCAAGGAGTAAATTGCTGGGCTGCTTTCTACCTGAGGAAGTCCACTATGCTTGCTTGTGGAGAGTGGATTGTGTGCTCAGAGTCCACAAGGATTTAAGAATCCGAGCCCTGCTGCCCTTGCCTCAGCCTGTGCATTAGGGCCCGGTGGTGAGAGCACTGAGCCATTGTGAATCAAGGCCCCTCCCTCGACCTGCATACTAACAGGCCAGAAGAGCTTGCTTGATTTTGGTCCTAGGCTCCTGCCTGTGGGTTGGATTCCAGGGGCACTCTCTCCTCCACAAACCAGACGGTGGCAGGTACATCCCCTCAATGGAAATTGCCCACACTTCACCCTAAAGACAGATCCTGCTGTTCAGCAACAATGTGAGTGGCCCACACATTTGTCCAGCATGAAACCGTTTGCAGATTCCTTTCCAGTACACAGTCCCGTCAGCCGGTCACTTCACGATGACAGCTCCTCGAAGCACCTTTTGGTTTGCAGTTGTGTAGCTTAGAAGTAGGAGCCTGCACGGCTTCAGGAATTCACAGAAGGAGCACACTTTGTGCTTGGAGAAGTTAATTATAGGAATATCCTGCAACCTGCTGCTCTGAGCCTGTGCACCTGGGGTGTTTCCCTGGAGGTCCTGTGTATGAGGATACTCATCAGCATGGGGTTTGGGAAGCCTAGCAGTGGAGACAACCTAGGTGGTCCTCTCCAGGGGAGTAGGTAAGAGCCCTACAGCAGTGAAAAGCATTGAAGGAAAAGTGTGTTCAGCAGTGCTCTTAATCTGATCAGAGCAGCCTGAACACATTCTAAACACAGGGCATTTAGAACTAGGGTAGAGGCACTAGAGCACCATAGATACAAACTCAGATTCTGAAGGTAAATGCCCAGGTTCAAATCCAAGCCCCCTCGCCAAGTGACCATGACTCCCCCGAGTCACCTGACCTCTGTGTTTACATCCTCAAAGTTAAGTAGTCAGGAAAGGGGGCTTGGGGCTTGCCACATGGATGGTTGCCACTCTCCTTTGCAAAGTGTAGTCCCCAAAAACAGGTGGAAGAGGGAAGGGTCCAATTAGAAGGCCGAGTACCAGCTGCCATGAATATGCCAGAGCTGCTGGCTAGTGATAAATAACTGAAACCCAGGGGGACAGCAGAGCTTGGGTGACCATACATTCTAGGAAAGAAAACATGCCTGTTGTCCTGGCTTTTTATCCAGCTTAGACAAAGATGGGCAAAGAAAATAATTTAGAAAATGGTAGAGATGGGCACAGAGAAAGGGCACGGAGGGAGGCACAAACAGAAGGCCAAGTGATGGTGGAGGCAGACATTGGAGAAATGCCTTTACAAGCCGGGGAATGCCAAGGATGCTGGCAACCCTGGGAGTGGGAAGAACCTGGAACACACCCTCCGTCAGAGTCTCCAGAAGGAACTGGCCCTTCATCACCTTTCGGACTTCTGGCCTCCAGAACTGGGCAAGAAAATGTTTCTGCTGTTGGAGGCCATCCAGCTGGTGGTCATTTGTTATGGTTGCCACAGAAAACGAATATAGATTTAGACATCTAATTTGCATATATAGATATGCATGTGTATTTGTTAAATAAAAGATAAAGCATGAC</dnaseq>|
 
sequence = <dnaseq>GACGGTTGGGAGTGGGAGGCCTCGGCGCTGTTCTCTGGATGCAACTGAGATTGCCGCTAGAGGGTGACGCCTGGGTCGGAATCCAAGGATTTGTGAAGAGGTGACCCAAATTTCAAGACAATGTTGGATGCAAACGGATTTGCCAGCAACTGCATCACTGTCAAAACCAGCTCTGCCCGTGTCTTCCGAAGATACCAAGTGAAATACATGTAGATGGGATTTACATCTGAAAAACCAAGGCAAGAGGCCATGGGAAGGGACGGAGGTGGAACAGGACTGGACAGAAGCTGATAAATGGTTGTTGCTGAGTACTGGGCAGATAGGGGTTGGTTATCCTATTGTCTTTACTTTCATATATTTTATTTTTTCTGTAATAAAACAAATTAAAATCACCTGTCGTGACCTCACAGGGGCCAGTGTGGGTTGTGGCGTGAGGCAGGAAGCTCTGCAGAGTTCCTTGGTCAAAAGGATTAATTACAAAAGAACTCCATGAACACCGAGAAGAAGAGAAGGGAATCCTGGCATTTAAAGCCACAAAGAAACTTGATATGGTCTTGTCTCCTTCTCTCAATTGACAGTGAGAAACTGAAGACCAGAGAGGGTGAGTGGTTTACTCAGTTTGGCACAACTGACCCCAACCTAGCCCTCCATGAGGACTGAGCGCATGAGAGATCCTGAGCCACAGCCGCCCAGCCCTGCTCCTCTCGAATTTCTGACCTACAGGAACTGCAAGAAGTAATGAAAGACTGCTGTTTAAAGCCACTGCATTTTGGCATGATTTGTTATGCAGTCGTAGATAACCAGAAAACATCGGATTTACATTTTAAGGTAAACTTTTTATTGAAACATCACATACACACAGAGACGTCCACCAATTGGCTCGATGAGCTTTCTCAAAGGAAACACATTCTCTGAGCAGTGTGCACATCCAGACACATCATCTCCATCCTCCAGAAGCCCCCTCCTGTTATCGCCACTCACAGGTCACCCGTCTCCTGACTTGCAGCCACAGAGATAGTCCTGCCTAATTCTGAACGTGGTACAAACGGAATCATACAGAATGGGCTTGGCTTCTTTCACTCTGGGCTGTGTTTATGAGCATCACCCAGATTGCTGCATGGAAGCCATCGTTTGTTCATTTTCACCACCATAGAGTATTCTACTGTTGATGGGACATAGGCTATTTATTCCTTCTACTGTTGAGGGACGCATAGTTATTTCCAGCTGGAGACTGGTATATGTCTCTTGGCTACCTTCTGCATGCATTTCTGTTGGAGGTTGTTTCAGGTATCTCTTAACGTATAACAGACCACCCTCAAATTGAGTCCTTGAAACAATTACCATTTTCTTCTTTCTCAGGATTTGGTGCATGGGATGGGCTCAGTTGGGCAGTTCTTCTGTTCCATGTGATGGTACTGGGGCTGCAGTCATTCAGAGGCTCAACTGGGCTGAACGTGCAAGGTTTCTTGCTCACGTGGCCATCAGTGGTGCTGGCTGCTGTTGGGAGCTCCACTGGACTTCTGTCCAGAGCTCCTCAGCTCACCTCTCTGTATCCTTGCCCTGTGGCTCAGGCTTCTAACAATACAGAGGCTGGATTCCAAGAGGAGGGAATTAGAAGCGTTCAGCCTTCTTAAGACCAGGATTCAGATGTCCCAGACTGTCACTGTATTGACCGGAGCATTTACAGGCCAGCCTAGTAATTTTTCCATCTTGGGCAGGAATGGGTGGCATATGCTGGGGGTAGGGGTAGCATTGTTGGGGATCATCTTTGGAGCTGTGTGCCAAGGAGTAAATTGCTGGGCTGCTTTCTACCTGAGGAAGTCCACTATGCTTGCTTGTGGAGAGTGGATTGTGTGCTCAGAGTCCACAAGGATTTAAGAATCCGAGCCCTGCTGCCCTTGCCTCAGCCTGTGCATTAGGGCCCGGTGGTGAGAGCACTGAGCCATTGTGAATCAAGGCCCCTCCCTCGACCTGCATACTAACAGGCCAGAAGAGCTTGCTTGATTTTGGTCCTAGGCTCCTGCCTGTGGGTTGGATTCCAGGGGCACTCTCTCCTCCACAAACCAGACGGTGGCAGGTACATCCCCTCAATGGAAATTGCCCACACTTCACCCTAAAGACAGATCCTGCTGTTCAGCAACAATGTGAGTGGCCCACACATTTGTCCAGCATGAAACCGTTTGCAGATTCCTTTCCAGTACACAGTCCCGTCAGCCGGTCACTTCACGATGACAGCTCCTCGAAGCACCTTTTGGTTTGCAGTTGTGTAGCTTAGAAGTAGGAGCCTGCACGGCTTCAGGAATTCACAGAAGGAGCACACTTTGTGCTTGGAGAAGTTAATTATAGGAATATCCTGCAACCTGCTGCTCTGAGCCTGTGCACCTGGGGTGTTTCCCTGGAGGTCCTGTGTATGAGGATACTCATCAGCATGGGGTTTGGGAAGCCTAGCAGTGGAGACAACCTAGGTGGTCCTCTCCAGGGGAGTAGGTAAGAGCCCTACAGCAGTGAAAAGCATTGAAGGAAAAGTGTGTTCAGCAGTGCTCTTAATCTGATCAGAGCAGCCTGAACACATTCTAAACACAGGGCATTTAGAACTAGGGTAGAGGCACTAGAGCACCATAGATACAAACTCAGATTCTGAAGGTAAATGCCCAGGTTCAAATCCAAGCCCCCTCGCCAAGTGACCATGACTCCCCCGAGTCACCTGACCTCTGTGTTTACATCCTCAAAGTTAAGTAGTCAGGAAAGGGGGCTTGGGGCTTGCCACATGGATGGTTGCCACTCTCCTTTGCAAAGTGTAGTCCCCAAAAACAGGTGGAAGAGGGAAGGGTCCAATTAGAAGGCCGAGTACCAGCTGCCATGAATATGCCAGAGCTGCTGGCTAGTGATAAATAACTGAAACCCAGGGGGACAGCAGAGCTTGGGTGACCATACATTCTAGGAAAGAAAACATGCCTGTTGTCCTGGCTTTTTATCCAGCTTAGACAAAGATGGGCAAAGAAAATAATTTAGAAAATGGTAGAGATGGGCACAGAGAAAGGGCACGGAGGGAGGCACAAACAGAAGGCCAAGTGATGGTGGAGGCAGACATTGGAGAAATGCCTTTACAAGCCGGGGAATGCCAAGGATGCTGGCAACCCTGGGAGTGGGAAGAACCTGGAACACACCCTCCGTCAGAGTCTCCAGAAGGAACTGGCCCTTCATCACCTTTCGGACTTCTGGCCTCCAGAACTGGGCAAGAAAATGTTTCTGCTGTTGGAGGCCATCCAGCTGGTGGTCATTTGTTATGGTTGCCACAGAAAACGAATATAGATTTAGACATCTAATTTGCATATATAGATATGCATGTGTATTTGTTAAATAAAAGATAAAGCATGAC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-MTHFSD-2]]
+
[[Category:Intergenic]][[Category:lnc-MTHFSD-2]][[Category:NONHSAG020218]]

Revision as of 14:36, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

lnc-MTHFSD-2:8

Source

LNCipedia2.1

Same with

NONHSAT144210

Classification

intergenic

Length

3379 nt

Genomic location

chr16-:86521319..86532116

Exon number

2

Exons

86521319..86524610,86532030..86532116

Genome context

Sequence
000001 GACGGTTGGG AGTGGGAGGC CTCGGCGCTG TTCTCTGGAT GCAACTGAGA TTGCCGCTAG AGGGTGACGC CTGGGTCGGA 000080
000081 ATCCAAGGAT TTGTGAAGAG GTGACCCAAA TTTCAAGACA ATGTTGGATG CAAACGGATT TGCCAGCAAC TGCATCACTG 000160
000161 TCAAAACCAG CTCTGCCCGT GTCTTCCGAA GATACCAAGT GAAATACATG TAGATGGGAT TTACATCTGA AAAACCAAGG 000240
000241 CAAGAGGCCA TGGGAAGGGA CGGAGGTGGA ACAGGACTGG ACAGAAGCTG ATAAATGGTT GTTGCTGAGT ACTGGGCAGA 000320
000321 TAGGGGTTGG TTATCCTATT GTCTTTACTT TCATATATTT TATTTTTTCT GTAATAAAAC AAATTAAAAT CACCTGTCGT 000400
000401 GACCTCACAG GGGCCAGTGT GGGTTGTGGC GTGAGGCAGG AAGCTCTGCA GAGTTCCTTG GTCAAAAGGA TTAATTACAA 000480
000481 AAGAACTCCA TGAACACCGA GAAGAAGAGA AGGGAATCCT GGCATTTAAA GCCACAAAGA AACTTGATAT GGTCTTGTCT 000560
000561 CCTTCTCTCA ATTGACAGTG AGAAACTGAA GACCAGAGAG GGTGAGTGGT TTACTCAGTT TGGCACAACT GACCCCAACC 000640
000641 TAGCCCTCCA TGAGGACTGA GCGCATGAGA GATCCTGAGC CACAGCCGCC CAGCCCTGCT CCTCTCGAAT TTCTGACCTA 000720
000721 CAGGAACTGC AAGAAGTAAT GAAAGACTGC TGTTTAAAGC CACTGCATTT TGGCATGATT TGTTATGCAG TCGTAGATAA 000800
000801 CCAGAAAACA TCGGATTTAC ATTTTAAGGT AAACTTTTTA TTGAAACATC ACATACACAC AGAGACGTCC ACCAATTGGC 000880
000881 TCGATGAGCT TTCTCAAAGG AAACACATTC TCTGAGCAGT GTGCACATCC AGACACATCA TCTCCATCCT CCAGAAGCCC 000960
000961 CCTCCTGTTA TCGCCACTCA CAGGTCACCC GTCTCCTGAC TTGCAGCCAC AGAGATAGTC CTGCCTAATT CTGAACGTGG 001040
001041 TACAAACGGA ATCATACAGA ATGGGCTTGG CTTCTTTCAC TCTGGGCTGT GTTTATGAGC ATCACCCAGA TTGCTGCATG 001120
001121 GAAGCCATCG TTTGTTCATT TTCACCACCA TAGAGTATTC TACTGTTGAT GGGACATAGG CTATTTATTC CTTCTACTGT 001200
001201 TGAGGGACGC ATAGTTATTT CCAGCTGGAG ACTGGTATAT GTCTCTTGGC TACCTTCTGC ATGCATTTCT GTTGGAGGTT 001280
001281 GTTTCAGGTA TCTCTTAACG TATAACAGAC CACCCTCAAA TTGAGTCCTT GAAACAATTA CCATTTTCTT CTTTCTCAGG 001360
001361 ATTTGGTGCA TGGGATGGGC TCAGTTGGGC AGTTCTTCTG TTCCATGTGA TGGTACTGGG GCTGCAGTCA TTCAGAGGCT 001440
001441 CAACTGGGCT GAACGTGCAA GGTTTCTTGC TCACGTGGCC ATCAGTGGTG CTGGCTGCTG TTGGGAGCTC CACTGGACTT 001520
001521 CTGTCCAGAG CTCCTCAGCT CACCTCTCTG TATCCTTGCC CTGTGGCTCA GGCTTCTAAC AATACAGAGG CTGGATTCCA 001600
001601 AGAGGAGGGA ATTAGAAGCG TTCAGCCTTC TTAAGACCAG GATTCAGATG TCCCAGACTG TCACTGTATT GACCGGAGCA 001680
001681 TTTACAGGCC AGCCTAGTAA TTTTTCCATC TTGGGCAGGA ATGGGTGGCA TATGCTGGGG GTAGGGGTAG CATTGTTGGG 001760
001761 GATCATCTTT GGAGCTGTGT GCCAAGGAGT AAATTGCTGG GCTGCTTTCT ACCTGAGGAA GTCCACTATG CTTGCTTGTG 001840
001841 GAGAGTGGAT TGTGTGCTCA GAGTCCACAA GGATTTAAGA ATCCGAGCCC TGCTGCCCTT GCCTCAGCCT GTGCATTAGG 001920
001921 GCCCGGTGGT GAGAGCACTG AGCCATTGTG AATCAAGGCC CCTCCCTCGA CCTGCATACT AACAGGCCAG AAGAGCTTGC 002000
002001 TTGATTTTGG TCCTAGGCTC CTGCCTGTGG GTTGGATTCC AGGGGCACTC TCTCCTCCAC AAACCAGACG GTGGCAGGTA 002080
002081 CATCCCCTCA ATGGAAATTG CCCACACTTC ACCCTAAAGA CAGATCCTGC TGTTCAGCAA CAATGTGAGT GGCCCACACA 002160
002161 TTTGTCCAGC ATGAAACCGT TTGCAGATTC CTTTCCAGTA CACAGTCCCG TCAGCCGGTC ACTTCACGAT GACAGCTCCT 002240
002241 CGAAGCACCT TTTGGTTTGC AGTTGTGTAG CTTAGAAGTA GGAGCCTGCA CGGCTTCAGG AATTCACAGA AGGAGCACAC 002320
002321 TTTGTGCTTG GAGAAGTTAA TTATAGGAAT ATCCTGCAAC CTGCTGCTCT GAGCCTGTGC ACCTGGGGTG TTTCCCTGGA 002400
002401 GGTCCTGTGT ATGAGGATAC TCATCAGCAT GGGGTTTGGG AAGCCTAGCA GTGGAGACAA CCTAGGTGGT CCTCTCCAGG 002480
002481 GGAGTAGGTA AGAGCCCTAC AGCAGTGAAA AGCATTGAAG GAAAAGTGTG TTCAGCAGTG CTCTTAATCT GATCAGAGCA 002560
002561 GCCTGAACAC ATTCTAAACA CAGGGCATTT AGAACTAGGG TAGAGGCACT AGAGCACCAT AGATACAAAC TCAGATTCTG 002640
002641 AAGGTAAATG CCCAGGTTCA AATCCAAGCC CCCTCGCCAA GTGACCATGA CTCCCCCGAG TCACCTGACC TCTGTGTTTA 002720
002721 CATCCTCAAA GTTAAGTAGT CAGGAAAGGG GGCTTGGGGC TTGCCACATG GATGGTTGCC ACTCTCCTTT GCAAAGTGTA 002800
002801 GTCCCCAAAA ACAGGTGGAA GAGGGAAGGG TCCAATTAGA AGGCCGAGTA CCAGCTGCCA TGAATATGCC AGAGCTGCTG 002880
002881 GCTAGTGATA AATAACTGAA ACCCAGGGGG ACAGCAGAGC TTGGGTGACC ATACATTCTA GGAAAGAAAA CATGCCTGTT 002960
002961 GTCCTGGCTT TTTATCCAGC TTAGACAAAG ATGGGCAAAG AAAATAATTT AGAAAATGGT AGAGATGGGC ACAGAGAAAG 003040
003041 GGCACGGAGG GAGGCACAAA CAGAAGGCCA AGTGATGGTG GAGGCAGACA TTGGAGAAAT GCCTTTACAA GCCGGGGAAT 003120
003121 GCCAAGGATG CTGGCAACCC TGGGAGTGGG AAGAACCTGG AACACACCCT CCGTCAGAGT CTCCAGAAGG AACTGGCCCT 003200
003201 TCATCACCTT TCGGACTTCT GGCCTCCAGA ACTGGGCAAG AAAATGTTTC TGCTGTTGGA GGCCATCCAG CTGGTGGTCA 003280
003281 TTTGTTATGG TTGCCACAGA AAACGAATAT AGATTTAGAC ATCTAATTTG CATATATAGA TATGCATGTG TATTTGTTAA 003360
003361 ATAAAAGATA AAGCATGAC
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