Difference between revisions of "ENST00000551334.1"

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sequence = <dnaseq>CTGCAGCAGCAGCGGCGTGGTCAGAGCGAGCTTCGGAGAAGCAGTGGTGGGTTCCATGTGATGGTGGAGTAGGAGGCAGGTCTCCGCGGTCATTTACCATGCTGTCCTCCAGGTTCAACAGTATGGCTCCAAAGGATGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGGAAAGAAAAAAGAAGAAAACAAACCTCCATACGAGAATGGGTCTAAAGGAACTTCCCAAACCTCCATGATTTTGCAGGAAACAAGATAAAGCTGGTTGGTGGAGAATTTGAACTGGAGATGAACTTTATTATCCAGGATGCTGAGAGTATAATACGCATGACAGAGCTTTTAGAGCACTGTGATGTAACATGTCAAGCAGAAATAGGGAGCATGTTTACAGCCATTCTATGAAAAAGTGTTTGGAATGTACAGACTAGCACAGAAGTTGGGCTAATTAAACAAGTATTGCTGAAAATGAGTGCTGTAGATGACATGAGAGCAGGTATGGGGTTGTCTGTTAGGAAAGTATAACTTAAAAGTTTATAAAGTTTCACATACTTCTCTTTATATTCTATAGGTAATGTAGATTTGTTGACACTACTTTGATTTAAAATAAATGGAAATGTATGGAAATTTTACTTTTTATATTAATGGAAAACCTGAAGAGTGAAAGAAGAAAAATATACTTACTATAGTAGACAAATATAATTACTAATGTTGTTTTCTAAATTTTAGAAAATCTCAGTACCACGGAGTGCTATGAAATCTATCAGAAAAATAAACAGTATCTTTTTATGTAGTATTTCATTAAGCTTTTACATAATTAAAATGCCACAATAGGTATTACAGTTCTGTATAATGAGCATTTTATCAAATTCCCCTAGTTCTGTGCCCCTCAATCTGGCATATATGCAACTATGACAGGAGGTACTAAAAGCCTTAGATAAGCATGGTGTATCTTTTTTTTTTCCCACGTATATTTTTTGTTGTTTTTTGTTTTTTTCTGTTATATGTCCTGGTTCTTCCATAACTTATAAACTTGATTTATACCGAGGAGGTGGGAAAGTGGGCGGGGCAGGGTGGACTGACCCGGGATGGGGAAGCTCCTCTCGCTGCCCCCTCGGGGCGGGCCTAGGCCCTTTGGAGGATGGGGACGCCAGGACACTCCTCCCTGAGGTCGTCTGGCCGCCTCTGCCCCTAGTGCTCAGAATCCTGTGTGCCCCTCAATTCCGGAATCCCTCCTGGGACCCCATGCCCACTGGGCACACTGCCCCTGGTACTCAGAATCCCGAAGCACCATTCGGTTCCAGAATCCCCTCCTCAGCTGCTGGGGTGGCGGGGTCCCTCCTTTCCGATGTCCCCCCCAACCCCTGAGGGGGGAGGGAAGGGAGGGGGGTCAGGTCTCCCCTCTGTGGCAGGGGGAGGTGGAGGTGGAGGTGGAATCGGAAGGGCGTGGAAGGCGGGGGCCAGGAGGGCTCAGCCGATGGTGAGTCCAGAGCCACACTGGAACTTGTTCTTGCGGTGATTCAGGAAGGCCCCAAGGGCCAGCGTCAGGGGCAGGAGCTGGAGCTTCTTCTCCAGCGTGGCACCCACGATCCAGTTGCTATCCACAGAGCCTTTGAAGAGGAGGTTGGCCTTGGGCAGGTCCAGCTGGTACCCGAAGGAGACGCTGGTATCCTGCATCCTTGTGCTGGCCTGAAAATCCACACCCACCTGCAACTGGTCACTGGCTTTGTGGTAGTATGTTGCGTCCATGCCCGCCTGGCTCAACGTTACCGTTGCCAACCAGTTGTTCAATGTGTATTTCTCAGCTAGAGACATGACAGTGCCCTCGTCCCCAGGCCGCCGGTTGTAGACCAGCTCTCCGCCCAGGGCCAGGCAAGGCCTGATGCTCTGGAGGTAGTGGGCTTCGAGAATTCTTGAACCCACGAGGACGTCTGGGATCCCCAGGGTGACGGCTGCGGTGAGTCAGAGCCCCGATACTCCCCGTCCACCTGCCAGTTCACAAACTTCGACTGCTGGGTCTGGATGGCCATCTTGGACCTGAGACCGGGGCCCAGCTGGTGAATGACCTGAGCGTGGAGACTGCCGCTGTTGTCCATGTCACCTACCAGTACAGGGAACGCCTCTGTGGGACTCAGCTGCTTTGTCCCCACATACGTGACCCCGAAGTGGTAGCTGGACTCCCCGATTGCGCTGAGGGCTACTGTGTGGTTCACCTGGAAACGGTTACTCAACCCTTTGTTGACTGTGAGCTTGACACCCTCCATCTGAATGGGAAACAGCTCCTTACACCTCCGGTGGCACTCCTGGAATGTGCCCGGGTTGGGCAGGCAGCCGCAGGCCCCATCCTCAGCGGCCCCTGAGGCGCTGGCGGTTGCAGCCCCGGGGGTCCGTTCCGAACCTCGACTCCTAGTGGTGCCGGCGCCCAGGCCGCCTCTCAGCGGCGGCAGCGTGAAGCCTGGCGGCGAGGGCGGAGGTGGCGGCCCTGCGGGCGGCGAGCTGGCGGCCAACATGTTCCCCATGGTCGCTGGCGGTGGCGCCTGCTCCCGGCCTGGTCTCCGCTCCCACCCGGTGCGCCACGCGCAACCGAACTCGCTGCCGCCGCCGCCACCCCCGTCGCCAGCATGGTGTATCTTTTGGACATGTCCATTTTGGAAGAAACTTTTGTGTTAAAATAAACTAATATATTATGGGCTAGAACATAAAATTCACCAAGAATTTCAAGATAAAAATACTAATGTTTTGCTTGTTTGGGTTATTTCAAACAATAACTTTGAAATCTATAATTTTTTCACCACCGACCCTCTACCTCCTTGCATGCTCATTCTCCTGTGTGGCTAGATGCATTTCGGAAAAGTGTTTTGAATATTATTTCAGAGCAAGTATCATTCCAGAAAATAAGTTTAAAGTTTGAAATGTTTATTTTTTGTAACCCATGAATCTTCAGCTTAAGTATCTTCTGACATAAAAGCATTTTCATAATTATAAAAGTGCTGATATTACTCTCCACAGTATTATATCTGATCCTGCAAAGTAGTTCAGATACCAGAGAATACTCTTAAACATTTTGACTCACGCATTTAATTATGTTTAAAATTTATGTAACAAGACATTAAATGAGAAAGAATGGAATGAAAAATGGGTTAAAAGAATGCAAAATCGCAAAAAGAATGCTTTGAATTTAAATATTTCCCAAAATTTGATTTTCTGAGAAAATATATTAAAAATCATACGTAATTA</dnaseq>|
 
sequence = <dnaseq>CTGCAGCAGCAGCGGCGTGGTCAGAGCGAGCTTCGGAGAAGCAGTGGTGGGTTCCATGTGATGGTGGAGTAGGAGGCAGGTCTCCGCGGTCATTTACCATGCTGTCCTCCAGGTTCAACAGTATGGCTCCAAAGGATGAAATTTCATTCTGATTTTCTGGCTGAAGACTATTCTCTTTGTGTATGTCCACCACAGTTACTTTATCCCTTCATCTGTGGATGGGCAGTCTCGCTGTATTGCCCAGGCTGGAGTGCAGTGGCATGATCTCAGCTCACTGCAAGCTCTGCTTCCTGGGTTCACGCCATTCTCCTGCCTCAGCCTCCTGAGTAGCTGGGATTACAGGCACCCGCCACCACGCCCAGGAAAGAAAAAAGAAGAAAACAAACCTCCATACGAGAATGGGTCTAAAGGAACTTCCCAAACCTCCATGATTTTGCAGGAAACAAGATAAAGCTGGTTGGTGGAGAATTTGAACTGGAGATGAACTTTATTATCCAGGATGCTGAGAGTATAATACGCATGACAGAGCTTTTAGAGCACTGTGATGTAACATGTCAAGCAGAAATAGGGAGCATGTTTACAGCCATTCTATGAAAAAGTGTTTGGAATGTACAGACTAGCACAGAAGTTGGGCTAATTAAACAAGTATTGCTGAAAATGAGTGCTGTAGATGACATGAGAGCAGGTATGGGGTTGTCTGTTAGGAAAGTATAACTTAAAAGTTTATAAAGTTTCACATACTTCTCTTTATATTCTATAGGTAATGTAGATTTGTTGACACTACTTTGATTTAAAATAAATGGAAATGTATGGAAATTTTACTTTTTATATTAATGGAAAACCTGAAGAGTGAAAGAAGAAAAATATACTTACTATAGTAGACAAATATAATTACTAATGTTGTTTTCTAAATTTTAGAAAATCTCAGTACCACGGAGTGCTATGAAATCTATCAGAAAAATAAACAGTATCTTTTTATGTAGTATTTCATTAAGCTTTTACATAATTAAAATGCCACAATAGGTATTACAGTTCTGTATAATGAGCATTTTATCAAATTCCCCTAGTTCTGTGCCCCTCAATCTGGCATATATGCAACTATGACAGGAGGTACTAAAAGCCTTAGATAAGCATGGTGTATCTTTTTTTTTTCCCACGTATATTTTTTGTTGTTTTTTGTTTTTTTCTGTTATATGTCCTGGTTCTTCCATAACTTATAAACTTGATTTATACCGAGGAGGTGGGAAAGTGGGCGGGGCAGGGTGGACTGACCCGGGATGGGGAAGCTCCTCTCGCTGCCCCCTCGGGGCGGGCCTAGGCCCTTTGGAGGATGGGGACGCCAGGACACTCCTCCCTGAGGTCGTCTGGCCGCCTCTGCCCCTAGTGCTCAGAATCCTGTGTGCCCCTCAATTCCGGAATCCCTCCTGGGACCCCATGCCCACTGGGCACACTGCCCCTGGTACTCAGAATCCCGAAGCACCATTCGGTTCCAGAATCCCCTCCTCAGCTGCTGGGGTGGCGGGGTCCCTCCTTTCCGATGTCCCCCCCAACCCCTGAGGGGGGAGGGAAGGGAGGGGGGTCAGGTCTCCCCTCTGTGGCAGGGGGAGGTGGAGGTGGAGGTGGAATCGGAAGGGCGTGGAAGGCGGGGGCCAGGAGGGCTCAGCCGATGGTGAGTCCAGAGCCACACTGGAACTTGTTCTTGCGGTGATTCAGGAAGGCCCCAAGGGCCAGCGTCAGGGGCAGGAGCTGGAGCTTCTTCTCCAGCGTGGCACCCACGATCCAGTTGCTATCCACAGAGCCTTTGAAGAGGAGGTTGGCCTTGGGCAGGTCCAGCTGGTACCCGAAGGAGACGCTGGTATCCTGCATCCTTGTGCTGGCCTGAAAATCCACACCCACCTGCAACTGGTCACTGGCTTTGTGGTAGTATGTTGCGTCCATGCCCGCCTGGCTCAACGTTACCGTTGCCAACCAGTTGTTCAATGTGTATTTCTCAGCTAGAGACATGACAGTGCCCTCGTCCCCAGGCCGCCGGTTGTAGACCAGCTCTCCGCCCAGGGCCAGGCAAGGCCTGATGCTCTGGAGGTAGTGGGCTTCGAGAATTCTTGAACCCACGAGGACGTCTGGGATCCCCAGGGTGACGGCTGCGGTGAGTCAGAGCCCCGATACTCCCCGTCCACCTGCCAGTTCACAAACTTCGACTGCTGGGTCTGGATGGCCATCTTGGACCTGAGACCGGGGCCCAGCTGGTGAATGACCTGAGCGTGGAGACTGCCGCTGTTGTCCATGTCACCTACCAGTACAGGGAACGCCTCTGTGGGACTCAGCTGCTTTGTCCCCACATACGTGACCCCGAAGTGGTAGCTGGACTCCCCGATTGCGCTGAGGGCTACTGTGTGGTTCACCTGGAAACGGTTACTCAACCCTTTGTTGACTGTGAGCTTGACACCCTCCATCTGAATGGGAAACAGCTCCTTACACCTCCGGTGGCACTCCTGGAATGTGCCCGGGTTGGGCAGGCAGCCGCAGGCCCCATCCTCAGCGGCCCCTGAGGCGCTGGCGGTTGCAGCCCCGGGGGTCCGTTCCGAACCTCGACTCCTAGTGGTGCCGGCGCCCAGGCCGCCTCTCAGCGGCGGCAGCGTGAAGCCTGGCGGCGAGGGCGGAGGTGGCGGCCCTGCGGGCGGCGAGCTGGCGGCCAACATGTTCCCCATGGTCGCTGGCGGTGGCGCCTGCTCCCGGCCTGGTCTCCGCTCCCACCCGGTGCGCCACGCGCAACCGAACTCGCTGCCGCCGCCGCCACCCCCGTCGCCAGCATGGTGTATCTTTTGGACATGTCCATTTTGGAAGAAACTTTTGTGTTAAAATAAACTAATATATTATGGGCTAGAACATAAAATTCACCAAGAATTTCAAGATAAAAATACTAATGTTTTGCTTGTTTGGGTTATTTCAAACAATAACTTTGAAATCTATAATTTTTTCACCACCGACCCTCTACCTCCTTGCATGCTCATTCTCCTGTGTGGCTAGATGCATTTCGGAAAAGTGTTTTGAATATTATTTCAGAGCAAGTATCATTCCAGAAAATAAGTTTAAAGTTTGAAATGTTTATTTTTTGTAACCCATGAATCTTCAGCTTAAGTATCTTCTGACATAAAAGCATTTTCATAATTATAAAAGTGCTGATATTACTCTCCACAGTATTATATCTGATCCTGCAAAGTAGTTCAGATACCAGAGAATACTCTTAAACATTTTGACTCACGCATTTAATTATGTTTAAAATTTATGTAACAAGACATTAAATGAGAAAGAATGGAATGAAAAATGGGTTAAAAGAATGCAAAATCGCAAAAAGAATGCTTTGAATTTAAATATTTCCCAAAATTTGATTTTCTGAGAAAATATATTAAAAATCATACGTAATTA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-POTEM-2]]
+
[[Category:Intergenic]][[Category:lnc-POTEM-2]][[Category:NONHSAG014338]]

Revision as of 14:55, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000551334.1

Source

Gencode19

Same with

lnc-POTEM-2:7,NONHSAT035498

Classification

intergenic

Length

3426 nt

Genomic location

chr14-:19854098..19925327

Exon number

5

Exons

19854098..19857070,19894700..19894790,19919138..19919273,19919492..19919629,19925240..19925327

Genome context

Sequence
000001 CTGCAGCAGC AGCGGCGTGG TCAGAGCGAG CTTCGGAGAA GCAGTGGTGG GTTCCATGTG ATGGTGGAGT AGGAGGCAGG 000080
000081 TCTCCGCGGT CATTTACCAT GCTGTCCTCC AGGTTCAACA GTATGGCTCC AAAGGATGAA ATTTCATTCT GATTTTCTGG 000160
000161 CTGAAGACTA TTCTCTTTGT GTATGTCCAC CACAGTTACT TTATCCCTTC ATCTGTGGAT GGGCAGTCTC GCTGTATTGC 000240
000241 CCAGGCTGGA GTGCAGTGGC ATGATCTCAG CTCACTGCAA GCTCTGCTTC CTGGGTTCAC GCCATTCTCC TGCCTCAGCC 000320
000321 TCCTGAGTAG CTGGGATTAC AGGCACCCGC CACCACGCCC AGGAAAGAAA AAAGAAGAAA ACAAACCTCC ATACGAGAAT 000400
000401 GGGTCTAAAG GAACTTCCCA AACCTCCATG ATTTTGCAGG AAACAAGATA AAGCTGGTTG GTGGAGAATT TGAACTGGAG 000480
000481 ATGAACTTTA TTATCCAGGA TGCTGAGAGT ATAATACGCA TGACAGAGCT TTTAGAGCAC TGTGATGTAA CATGTCAAGC 000560
000561 AGAAATAGGG AGCATGTTTA CAGCCATTCT ATGAAAAAGT GTTTGGAATG TACAGACTAG CACAGAAGTT GGGCTAATTA 000640
000641 AACAAGTATT GCTGAAAATG AGTGCTGTAG ATGACATGAG AGCAGGTATG GGGTTGTCTG TTAGGAAAGT ATAACTTAAA 000720
000721 AGTTTATAAA GTTTCACATA CTTCTCTTTA TATTCTATAG GTAATGTAGA TTTGTTGACA CTACTTTGAT TTAAAATAAA 000800
000801 TGGAAATGTA TGGAAATTTT ACTTTTTATA TTAATGGAAA ACCTGAAGAG TGAAAGAAGA AAAATATACT TACTATAGTA 000880
000881 GACAAATATA ATTACTAATG TTGTTTTCTA AATTTTAGAA AATCTCAGTA CCACGGAGTG CTATGAAATC TATCAGAAAA 000960
000961 ATAAACAGTA TCTTTTTATG TAGTATTTCA TTAAGCTTTT ACATAATTAA AATGCCACAA TAGGTATTAC AGTTCTGTAT 001040
001041 AATGAGCATT TTATCAAATT CCCCTAGTTC TGTGCCCCTC AATCTGGCAT ATATGCAACT ATGACAGGAG GTACTAAAAG 001120
001121 CCTTAGATAA GCATGGTGTA TCTTTTTTTT TTCCCACGTA TATTTTTTGT TGTTTTTTGT TTTTTTCTGT TATATGTCCT 001200
001201 GGTTCTTCCA TAACTTATAA ACTTGATTTA TACCGAGGAG GTGGGAAAGT GGGCGGGGCA GGGTGGACTG ACCCGGGATG 001280
001281 GGGAAGCTCC TCTCGCTGCC CCCTCGGGGC GGGCCTAGGC CCTTTGGAGG ATGGGGACGC CAGGACACTC CTCCCTGAGG 001360
001361 TCGTCTGGCC GCCTCTGCCC CTAGTGCTCA GAATCCTGTG TGCCCCTCAA TTCCGGAATC CCTCCTGGGA CCCCATGCCC 001440
001441 ACTGGGCACA CTGCCCCTGG TACTCAGAAT CCCGAAGCAC CATTCGGTTC CAGAATCCCC TCCTCAGCTG CTGGGGTGGC 001520
001521 GGGGTCCCTC CTTTCCGATG TCCCCCCCAA CCCCTGAGGG GGGAGGGAAG GGAGGGGGGT CAGGTCTCCC CTCTGTGGCA 001600
001601 GGGGGAGGTG GAGGTGGAGG TGGAATCGGA AGGGCGTGGA AGGCGGGGGC CAGGAGGGCT CAGCCGATGG TGAGTCCAGA 001680
001681 GCCACACTGG AACTTGTTCT TGCGGTGATT CAGGAAGGCC CCAAGGGCCA GCGTCAGGGG CAGGAGCTGG AGCTTCTTCT 001760
001761 CCAGCGTGGC ACCCACGATC CAGTTGCTAT CCACAGAGCC TTTGAAGAGG AGGTTGGCCT TGGGCAGGTC CAGCTGGTAC 001840
001841 CCGAAGGAGA CGCTGGTATC CTGCATCCTT GTGCTGGCCT GAAAATCCAC ACCCACCTGC AACTGGTCAC TGGCTTTGTG 001920
001921 GTAGTATGTT GCGTCCATGC CCGCCTGGCT CAACGTTACC GTTGCCAACC AGTTGTTCAA TGTGTATTTC TCAGCTAGAG 002000
002001 ACATGACAGT GCCCTCGTCC CCAGGCCGCC GGTTGTAGAC CAGCTCTCCG CCCAGGGCCA GGCAAGGCCT GATGCTCTGG 002080
002081 AGGTAGTGGG CTTCGAGAAT TCTTGAACCC ACGAGGACGT CTGGGATCCC CAGGGTGACG GCTGCGGTGA GTCAGAGCCC 002160
002161 CGATACTCCC CGTCCACCTG CCAGTTCACA AACTTCGACT GCTGGGTCTG GATGGCCATC TTGGACCTGA GACCGGGGCC 002240
002241 CAGCTGGTGA ATGACCTGAG CGTGGAGACT GCCGCTGTTG TCCATGTCAC CTACCAGTAC AGGGAACGCC TCTGTGGGAC 002320
002321 TCAGCTGCTT TGTCCCCACA TACGTGACCC CGAAGTGGTA GCTGGACTCC CCGATTGCGC TGAGGGCTAC TGTGTGGTTC 002400
002401 ACCTGGAAAC GGTTACTCAA CCCTTTGTTG ACTGTGAGCT TGACACCCTC CATCTGAATG GGAAACAGCT CCTTACACCT 002480
002481 CCGGTGGCAC TCCTGGAATG TGCCCGGGTT GGGCAGGCAG CCGCAGGCCC CATCCTCAGC GGCCCCTGAG GCGCTGGCGG 002560
002561 TTGCAGCCCC GGGGGTCCGT TCCGAACCTC GACTCCTAGT GGTGCCGGCG CCCAGGCCGC CTCTCAGCGG CGGCAGCGTG 002640
002641 AAGCCTGGCG GCGAGGGCGG AGGTGGCGGC CCTGCGGGCG GCGAGCTGGC GGCCAACATG TTCCCCATGG TCGCTGGCGG 002720
002721 TGGCGCCTGC TCCCGGCCTG GTCTCCGCTC CCACCCGGTG CGCCACGCGC AACCGAACTC GCTGCCGCCG CCGCCACCCC 002800
002801 CGTCGCCAGC ATGGTGTATC TTTTGGACAT GTCCATTTTG GAAGAAACTT TTGTGTTAAA ATAAACTAAT ATATTATGGG 002880
002881 CTAGAACATA AAATTCACCA AGAATTTCAA GATAAAAATA CTAATGTTTT GCTTGTTTGG GTTATTTCAA ACAATAACTT 002960
002961 TGAAATCTAT AATTTTTTCA CCACCGACCC TCTACCTCCT TGCATGCTCA TTCTCCTGTG TGGCTAGATG CATTTCGGAA 003040
003041 AAGTGTTTTG AATATTATTT CAGAGCAAGT ATCATTCCAG AAAATAAGTT TAAAGTTTGA AATGTTTATT TTTTGTAACC 003120
003121 CATGAATCTT CAGCTTAAGT ATCTTCTGAC ATAAAAGCAT TTTCATAATT ATAAAAGTGC TGATATTACT CTCCACAGTA 003200
003201 TTATATCTGA TCCTGCAAAG TAGTTCAGAT ACCAGAGAAT ACTCTTAAAC ATTTTGACTC ACGCATTTAA TTATGTTTAA 003280
003281 AATTTATGTA ACAAGACATT AAATGAGAAA GAATGGAATG AAAAATGGGT TAAAAGAATG CAAAATCGCA AAAAGAATGC 003360
003361 TTTGAATTTA AATATTTCCC AAAATTTGAT TTTCTGAGAA AATATATTAA AAATCATACG TAATTA
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