Difference between revisions of "ENST00000539299.1"

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sequence = <dnaseq>TTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCGGACAATAATGTTTTGAGCTGTTGCTGAGTCTGGCTTTTGTGACGGGAACTTTTAGCACTCAAGGAGTGGCCTTGTCTCTGGCCTGTCCCCGAGTGCTCATGGGCAGCCAAGGCCTGGGGACTGCTCAGGCAGGGTAGATGTATTTGCCAGGCCAGCTCCCGTCCCTGGGACCTCAGGGAGTAGCTTCATCCCTGAAGGCTGAGTGTCTTCTGCCTCATGTGGGTGGCCCCTCTGCAGGGTTCTCAGGCATCCAGGGAAGTGGGTGCCACAGCGTTGCCTCCAGCCTCACTGGGGCTGGCTGGACTTTGCTCTGACAACACAGCAGTGGCTGGGCCCCTGCAACTCTCCAGGGCTCAGTTTCCCTGTTGGCCGCACTATGGCATAGGCCCCTGTGTGGACACCGATGAGCTGACCCCACAAATGCCACCCGGCCGCTCCCCCAGGCTTCAGTGGCCTAACAGCTGTTGTGTCAGGAACCAGCTTAAAGAATCTTTCTTGCTTTCTCAAACTCTCCAGGAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGAGCTACCTCCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTTTTAGCTACAGATCCAGCCCCCCTCCATCACCACAACAGTCGAGTCCAAATCAAACGCGCTCCAGGCAGGTGGGGCTGGGGTTCTGCCAGCCTCCTGGCCAGCAGGGGTGGGTGGGCAGACTGGGGCCAGTATCAGCTGTTCTGCCTGGACCCAGGCCGGGCTGGGAAGGCACACTTGTGCTTATTTCCCGCCTCCACTTCTGTGCAAGCTTGTGCTGTCATAAGCAGAGATCACAGCCCCATTTCTTGGATGGAGAAAGTGGACACTGAGGTCTGAGGCTTTTGAGGACAGTCAGGAGCCCTCCTATGGGCTCCAGTGATGCACTCACCAGCTTCTGGTCCTCTTCTTCCACCTCTTAGAGTGCCTTGGCTCCCTCCTGTCGTCCTGGGGAACCTCGGCCCCAGCCCTGCCTCCCCAGCCAGTCACAGCTCCTCCCTGGTCACCCTGAGGGAGCTCAGGGCCCGGCTGGTAGCTGGGTTGCTCTGCTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTGCCTGGCCTCCCCTCTCATGGCCCAGCCACCCCAGAACCTGAAGAGGTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTCCCTGCCTGCCCTCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAAGGCTGGAGCACAACTGCCTCTCAATAAACGTGTTGC</dnaseq>|
 
sequence = <dnaseq>TTTAGTAGAGACAGGGTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTGACCTCAGGTGATCCGCCCACCTCGGCCTCCCAAAGTGCTGGGATTACAGGCATGAGCCACCGCGCCTGGCCGGACAATAATGTTTTGAGCTGTTGCTGAGTCTGGCTTTTGTGACGGGAACTTTTAGCACTCAAGGAGTGGCCTTGTCTCTGGCCTGTCCCCGAGTGCTCATGGGCAGCCAAGGCCTGGGGACTGCTCAGGCAGGGTAGATGTATTTGCCAGGCCAGCTCCCGTCCCTGGGACCTCAGGGAGTAGCTTCATCCCTGAAGGCTGAGTGTCTTCTGCCTCATGTGGGTGGCCCCTCTGCAGGGTTCTCAGGCATCCAGGGAAGTGGGTGCCACAGCGTTGCCTCCAGCCTCACTGGGGCTGGCTGGACTTTGCTCTGACAACACAGCAGTGGCTGGGCCCCTGCAACTCTCCAGGGCTCAGTTTCCCTGTTGGCCGCACTATGGCATAGGCCCCTGTGTGGACACCGATGAGCTGACCCCACAAATGCCACCCGGCCGCTCCCCCAGGCTTCAGTGGCCTAACAGCTGTTGTGTCAGGAACCAGCTTAAAGAATCTTTCTTGCTTTCTCAAACTCTCCAGGAATTCCTGGTGACTGGAAGGGGGAGTGACTCAGGCCCTCAACCTCTAGCAGGTAAGGGAGCTACCTCCTGGGTGGGCATGCCCAGTTCCTCAGTGGGCCCAGCGCGGCCCAGCCTCCGAGGAAGCTCTGAGCAGCTGGCTTGGCTCCGAGGTATTTTTAGCTACAGATCCAGCCCCCCTCCATCACCACAACAGTCGAGTCCAAATCAAACGCGCTCCAGGCAGGTGGGGCTGGGGTTCTGCCAGCCTCCTGGCCAGCAGGGGTGGGTGGGCAGACTGGGGCCAGTATCAGCTGTTCTGCCTGGACCCAGGCCGGGCTGGGAAGGCACACTTGTGCTTATTTCCCGCCTCCACTTCTGTGCAAGCTTGTGCTGTCATAAGCAGAGATCACAGCCCCATTTCTTGGATGGAGAAAGTGGACACTGAGGTCTGAGGCTTTTGAGGACAGTCAGGAGCCCTCCTATGGGCTCCAGTGATGCACTCACCAGCTTCTGGTCCTCTTCTTCCACCTCTTAGAGTGCCTTGGCTCCCTCCTGTCGTCCTGGGGAACCTCGGCCCCAGCCCTGCCTCCCCAGCCAGTCACAGCTCCTCCCTGGTCACCCTGAGGGAGCTCAGGGCCCGGCTGGTAGCTGGGTTGCTCTGCTTCTGTCCCCCACTCCTGTGGAGCCTGGCAGGCAACTCCATGATCTGACCCCGGTTACCTTGACAGCCCTGCCTGGCCTCCCCTCTCATGGCCCAGCCACCCCAGAACCTGAAGAGGTTTTCTAGCTGCCGTGCATTTGCCAGGCTGGGTTACCCACCCTACTTTCCCTGCCTGCCCTCCAGTGCTGCCAGGCCTAGTGTGCCAGCCAGCGCTCAGCCTTCAGTAAAGGGTTCCCCTGCTTCCAACCTCCATTGCACTGCTTCCCCTAAGACTGTGACCTCCTGGAAGGCTGGAGCACAACTGCCTCTCAATAAACGTGTTGC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-RHOF-1]][[Category:NONHSAG012555]]
+
[[Category:Intergenic]][[Category:lnc-RHOF-1]][[Category:NONHSAG012555]][[Category:ENSG00000212694.4]]

Revision as of 18:23, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000539299.1

Source

Gencode19

Same with

lnc-RHOF-1:16,NONHSAT031453

Classification

intergenic

Length

1603 nt

Genomic location

chr12-:122233183..122234785

Exon number

1

Exons

122233183..122234785

Genome context

Sequence
000001 TTTAGTAGAG ACAGGGTTTC TCCATGTTGG TCAGGCTGGT CTCAAACTGA CCTCAGGTGA TCCGCCCACC TCGGCCTCCC 000080
000081 AAAGTGCTGG GATTACAGGC ATGAGCCACC GCGCCTGGCC GGACAATAAT GTTTTGAGCT GTTGCTGAGT CTGGCTTTTG 000160
000161 TGACGGGAAC TTTTAGCACT CAAGGAGTGG CCTTGTCTCT GGCCTGTCCC CGAGTGCTCA TGGGCAGCCA AGGCCTGGGG 000240
000241 ACTGCTCAGG CAGGGTAGAT GTATTTGCCA GGCCAGCTCC CGTCCCTGGG ACCTCAGGGA GTAGCTTCAT CCCTGAAGGC 000320
000321 TGAGTGTCTT CTGCCTCATG TGGGTGGCCC CTCTGCAGGG TTCTCAGGCA TCCAGGGAAG TGGGTGCCAC AGCGTTGCCT 000400
000401 CCAGCCTCAC TGGGGCTGGC TGGACTTTGC TCTGACAACA CAGCAGTGGC TGGGCCCCTG CAACTCTCCA GGGCTCAGTT 000480
000481 TCCCTGTTGG CCGCACTATG GCATAGGCCC CTGTGTGGAC ACCGATGAGC TGACCCCACA AATGCCACCC GGCCGCTCCC 000560
000561 CCAGGCTTCA GTGGCCTAAC AGCTGTTGTG TCAGGAACCA GCTTAAAGAA TCTTTCTTGC TTTCTCAAAC TCTCCAGGAA 000640
000641 TTCCTGGTGA CTGGAAGGGG GAGTGACTCA GGCCCTCAAC CTCTAGCAGG TAAGGGAGCT ACCTCCTGGG TGGGCATGCC 000720
000721 CAGTTCCTCA GTGGGCCCAG CGCGGCCCAG CCTCCGAGGA AGCTCTGAGC AGCTGGCTTG GCTCCGAGGT ATTTTTAGCT 000800
000801 ACAGATCCAG CCCCCCTCCA TCACCACAAC AGTCGAGTCC AAATCAAACG CGCTCCAGGC AGGTGGGGCT GGGGTTCTGC 000880
000881 CAGCCTCCTG GCCAGCAGGG GTGGGTGGGC AGACTGGGGC CAGTATCAGC TGTTCTGCCT GGACCCAGGC CGGGCTGGGA 000960
000961 AGGCACACTT GTGCTTATTT CCCGCCTCCA CTTCTGTGCA AGCTTGTGCT GTCATAAGCA GAGATCACAG CCCCATTTCT 001040
001041 TGGATGGAGA AAGTGGACAC TGAGGTCTGA GGCTTTTGAG GACAGTCAGG AGCCCTCCTA TGGGCTCCAG TGATGCACTC 001120
001121 ACCAGCTTCT GGTCCTCTTC TTCCACCTCT TAGAGTGCCT TGGCTCCCTC CTGTCGTCCT GGGGAACCTC GGCCCCAGCC 001200
001201 CTGCCTCCCC AGCCAGTCAC AGCTCCTCCC TGGTCACCCT GAGGGAGCTC AGGGCCCGGC TGGTAGCTGG GTTGCTCTGC 001280
001281 TTCTGTCCCC CACTCCTGTG GAGCCTGGCA GGCAACTCCA TGATCTGACC CCGGTTACCT TGACAGCCCT GCCTGGCCTC 001360
001361 CCCTCTCATG GCCCAGCCAC CCCAGAACCT GAAGAGGTTT TCTAGCTGCC GTGCATTTGC CAGGCTGGGT TACCCACCCT 001440
001441 ACTTTCCCTG CCTGCCCTCC AGTGCTGCCA GGCCTAGTGT GCCAGCCAGC GCTCAGCCTT CAGTAAAGGG TTCCCCTGCT 001520
001521 TCCAACCTCC ATTGCACTGC TTCCCCTAAG ACTGTGACCT CCTGGAAGGC TGGAGCACAA CTGCCTCTCA ATAAACGTGT 001600
001601 TGC
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Predicted Small Protein

Name ENST00000539299.1_smProtein_1112:1327
Length 72
Molecular weight 7417.7871
Aromaticity 0.0422535211268
Instability index 83.6887323944
Isoelectric point 10.3460083008
Runs 7
Runs residual 0.0499629355078
Runs probability 0.0450828980241
Amino acid sequence MHSPASGPLLPPLRVPWLPPVVLGNLGPSPASPASHSSSLVTLRELRARLVAGLLCFCPP
LLWSLAGNSMI
Secondary structure LLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHLLLH
HHHHHHLLLLL
PRMN -
PiMo -