Difference between revisions of "ENST00000540882.1"

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sequence = <dnaseq>AGAAAAACAGGGACATCAACCAGCAAAGATGCATCCTCATTTAATAGAGCTTGAAATTACTATAATCTGTAAAGTACAGCGAGAAGAAGAAGTTTCACCTGCCTGCACATCTGTCGTTGACTCTCCATCTGACTTGGAGGGACTCTGAGGGACCAACCTGAGCCTGAGAAGAGGCAAGATTCCCCTTCAAGGACACACTGGGAACTTACGGACCTCTTTCTCCATGGTGCAGAGCGCAGAGGTGAACAAACAGACGCATAATAGCTCTTGAGCTTGCCATTGGGAAGTGAAAATCAACTGCTTGAATAAATGTAAGGACTCAGAACACCAGACATGGGTGCTCCAATCCACGTAGTGTTGAGGCAGTGAAGTTTGTGTTCCAGGAACTTCAGAACTCCTGAATGTATTGGTGTTGATAAAAGGTGATGAGATGAAGTAGAATGACCATAAACTTAGAGGTAGACATCACCTTGTGACTCAACAGCAGCCAATAAGATGGAAATAAAGGCCATGAAGTTATCGGATGGCATCTACAAGGAATACTTAGATGAGGAGGTGACTCTGGTAGCAATTGTTCTTTTGTCTTTCTCACCTTCCTTCTTGTCCTGTCTGGGATGCTGAAGTGATGGCTGGTATACAGATGCCCTGTTGTGATGTTGAGATAAACATGAGAATAAAAGTCGGCGATTACAGATGGCAGAGAAGAGAGAGAAAGATAGGATGTAGGTGGATATTGACGGAACTAAGTTTCTATTGCACAAGTTCTACCACCAACCTCTGGACTTCATGATATGTGAGGGAGAAATAAACTCCTATTTTAGAAGAGATCTATGTTACCTGCAACTGAACGGAATGCTTAATTGGCACATCCTATGTGCTCCAAACCTTCCTTAATTTCTGTGTGTAAGGCATACTTAGTCTTTACCCATTATTCTGTTCACATTCATTCACTTGATCAGCCTCCCAACTCTATGGTAAAGAGTTTACTACAGTTTACTCTATTAGTAAGGGAGATTCTGGAGCAAGCCCCACAAATCATAGATTGAATACCCATTCATTAAGAGAGAGATTTAAAGATACTTCTATCCAAACACATTTTAAATTTCCAGCACCTTTGAGGTGGTGGAGGTTCATGGTGGTTGATAGGGTTTAAATGACTTGTGATTCAAGCTCCATATTACAATGTAACAGTGCAAAAGTTCATTTTTTTAAATTTATTTTACTTTAAGTTCTGGTATACATGTGTAGAACATGCGGGTTTGTTACATAGGTATACATGTGCCATGGTGGTTTGCTGCACCTATCAAACCGTCACCTAGGTTTTAAGAACCACATGCATTAGGTATTTGACCTAATGCTCTCCCTCATGTTGCCCCCCAACTCCCTGACAGGGCCCAGTGTGTGATGTTCCCCTCCCTGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGAACATGTGGTGTTTGATTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGCTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGAACTCATTCTTTTTTATGGCTTCATAATATTCCATGAGTCTGGATTTGGTTACAGATAGAGCTGGACAAGCCTTAGCTATATCTAATGGCTTTTGACATGTTATATCAATTTCTTACTGCTTTTGTAAATGAATATATTAAGAAGAAAAAATTACAAATGACCCTTTCTTCACAAACTTTTAGGGTAATCAAGTTCAGTTATTAAAAAATGGATGTTTGCAACATTCATAGTAATTATTTTCAGAAAATTAAAAATGATTAAAAATTATATTTTCATCCCATTCAGATATTATATATTTAACTGTGAGATAATTCTCAGAGATAAATGTCAACTTTTAAAAAATGCTAAATAAATTAAATCAAAATATCCCCTCTAAAATAAATAAA</dnaseq>|
 
sequence = <dnaseq>AGAAAAACAGGGACATCAACCAGCAAAGATGCATCCTCATTTAATAGAGCTTGAAATTACTATAATCTGTAAAGTACAGCGAGAAGAAGAAGTTTCACCTGCCTGCACATCTGTCGTTGACTCTCCATCTGACTTGGAGGGACTCTGAGGGACCAACCTGAGCCTGAGAAGAGGCAAGATTCCCCTTCAAGGACACACTGGGAACTTACGGACCTCTTTCTCCATGGTGCAGAGCGCAGAGGTGAACAAACAGACGCATAATAGCTCTTGAGCTTGCCATTGGGAAGTGAAAATCAACTGCTTGAATAAATGTAAGGACTCAGAACACCAGACATGGGTGCTCCAATCCACGTAGTGTTGAGGCAGTGAAGTTTGTGTTCCAGGAACTTCAGAACTCCTGAATGTATTGGTGTTGATAAAAGGTGATGAGATGAAGTAGAATGACCATAAACTTAGAGGTAGACATCACCTTGTGACTCAACAGCAGCCAATAAGATGGAAATAAAGGCCATGAAGTTATCGGATGGCATCTACAAGGAATACTTAGATGAGGAGGTGACTCTGGTAGCAATTGTTCTTTTGTCTTTCTCACCTTCCTTCTTGTCCTGTCTGGGATGCTGAAGTGATGGCTGGTATACAGATGCCCTGTTGTGATGTTGAGATAAACATGAGAATAAAAGTCGGCGATTACAGATGGCAGAGAAGAGAGAGAAAGATAGGATGTAGGTGGATATTGACGGAACTAAGTTTCTATTGCACAAGTTCTACCACCAACCTCTGGACTTCATGATATGTGAGGGAGAAATAAACTCCTATTTTAGAAGAGATCTATGTTACCTGCAACTGAACGGAATGCTTAATTGGCACATCCTATGTGCTCCAAACCTTCCTTAATTTCTGTGTGTAAGGCATACTTAGTCTTTACCCATTATTCTGTTCACATTCATTCACTTGATCAGCCTCCCAACTCTATGGTAAAGAGTTTACTACAGTTTACTCTATTAGTAAGGGAGATTCTGGAGCAAGCCCCACAAATCATAGATTGAATACCCATTCATTAAGAGAGAGATTTAAAGATACTTCTATCCAAACACATTTTAAATTTCCAGCACCTTTGAGGTGGTGGAGGTTCATGGTGGTTGATAGGGTTTAAATGACTTGTGATTCAAGCTCCATATTACAATGTAACAGTGCAAAAGTTCATTTTTTTAAATTTATTTTACTTTAAGTTCTGGTATACATGTGTAGAACATGCGGGTTTGTTACATAGGTATACATGTGCCATGGTGGTTTGCTGCACCTATCAAACCGTCACCTAGGTTTTAAGAACCACATGCATTAGGTATTTGACCTAATGCTCTCCCTCATGTTGCCCCCCAACTCCCTGACAGGGCCCAGTGTGTGATGTTCCCCTCCCTGTGTCCATGTGTTCTCATTGTTCAACTCCCACTTATGAGTGAGAACATGTGGTGTTTGATTTTCTGTTCCTGTGTTAGTTTGCTGAGAATGATGGCTTCCAGCTTCATCCATGTCCCTGCAAAGGACACGAACTCATTCTTTTTTATGGCTTCATAATATTCCATGAGTCTGGATTTGGTTACAGATAGAGCTGGACAAGCCTTAGCTATATCTAATGGCTTTTGACATGTTATATCAATTTCTTACTGCTTTTGTAAATGAATATATTAAGAAGAAAAAATTACAAATGACCCTTTCTTCACAAACTTTTAGGGTAATCAAGTTCAGTTATTAAAAAATGGATGTTTGCAACATTCATAGTAATTATTTTCAGAAAATTAAAAATGATTAAAAATTATATTTTCATCCCATTCAGATATTATATATTTAACTGTGAGATAATTCTCAGAGATAAATGTCAACTTTTAAAAAATGCTAAATAAATTAAATCAAAATATCCCCTCTAAAATAAATAAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-TMEM132C-2]][[Category:NONHSAG012719]]
+
[[Category:Intergenic]][[Category:lnc-TMEM132C-2]][[Category:NONHSAG012719]][[Category:ENSG00000256193.1]]

Revision as of 18:35, 15 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000540882.1

Source

Gencode19

Same with

lnc-TMEM132C-2:3,NONHSAT031887

Classification

intergenic

Length

1935 nt

Genomic location

chr12+:128399987..128435995

Exon number

4

Exons

128399987..128400227,128429263..128429344,128433369..128433503,128434519..128435995

Genome context

Sequence
000001 AGAAAAACAG GGACATCAAC CAGCAAAGAT GCATCCTCAT TTAATAGAGC TTGAAATTAC TATAATCTGT AAAGTACAGC 000080
000081 GAGAAGAAGA AGTTTCACCT GCCTGCACAT CTGTCGTTGA CTCTCCATCT GACTTGGAGG GACTCTGAGG GACCAACCTG 000160
000161 AGCCTGAGAA GAGGCAAGAT TCCCCTTCAA GGACACACTG GGAACTTACG GACCTCTTTC TCCATGGTGC AGAGCGCAGA 000240
000241 GGTGAACAAA CAGACGCATA ATAGCTCTTG AGCTTGCCAT TGGGAAGTGA AAATCAACTG CTTGAATAAA TGTAAGGACT 000320
000321 CAGAACACCA GACATGGGTG CTCCAATCCA CGTAGTGTTG AGGCAGTGAA GTTTGTGTTC CAGGAACTTC AGAACTCCTG 000400
000401 AATGTATTGG TGTTGATAAA AGGTGATGAG ATGAAGTAGA ATGACCATAA ACTTAGAGGT AGACATCACC TTGTGACTCA 000480
000481 ACAGCAGCCA ATAAGATGGA AATAAAGGCC ATGAAGTTAT CGGATGGCAT CTACAAGGAA TACTTAGATG AGGAGGTGAC 000560
000561 TCTGGTAGCA ATTGTTCTTT TGTCTTTCTC ACCTTCCTTC TTGTCCTGTC TGGGATGCTG AAGTGATGGC TGGTATACAG 000640
000641 ATGCCCTGTT GTGATGTTGA GATAAACATG AGAATAAAAG TCGGCGATTA CAGATGGCAG AGAAGAGAGA GAAAGATAGG 000720
000721 ATGTAGGTGG ATATTGACGG AACTAAGTTT CTATTGCACA AGTTCTACCA CCAACCTCTG GACTTCATGA TATGTGAGGG 000800
000801 AGAAATAAAC TCCTATTTTA GAAGAGATCT ATGTTACCTG CAACTGAACG GAATGCTTAA TTGGCACATC CTATGTGCTC 000880
000881 CAAACCTTCC TTAATTTCTG TGTGTAAGGC ATACTTAGTC TTTACCCATT ATTCTGTTCA CATTCATTCA CTTGATCAGC 000960
000961 CTCCCAACTC TATGGTAAAG AGTTTACTAC AGTTTACTCT ATTAGTAAGG GAGATTCTGG AGCAAGCCCC ACAAATCATA 001040
001041 GATTGAATAC CCATTCATTA AGAGAGAGAT TTAAAGATAC TTCTATCCAA ACACATTTTA AATTTCCAGC ACCTTTGAGG 001120
001121 TGGTGGAGGT TCATGGTGGT TGATAGGGTT TAAATGACTT GTGATTCAAG CTCCATATTA CAATGTAACA GTGCAAAAGT 001200
001201 TCATTTTTTT AAATTTATTT TACTTTAAGT TCTGGTATAC ATGTGTAGAA CATGCGGGTT TGTTACATAG GTATACATGT 001280
001281 GCCATGGTGG TTTGCTGCAC CTATCAAACC GTCACCTAGG TTTTAAGAAC CACATGCATT AGGTATTTGA CCTAATGCTC 001360
001361 TCCCTCATGT TGCCCCCCAA CTCCCTGACA GGGCCCAGTG TGTGATGTTC CCCTCCCTGT GTCCATGTGT TCTCATTGTT 001440
001441 CAACTCCCAC TTATGAGTGA GAACATGTGG TGTTTGATTT TCTGTTCCTG TGTTAGTTTG CTGAGAATGA TGGCTTCCAG 001520
001521 CTTCATCCAT GTCCCTGCAA AGGACACGAA CTCATTCTTT TTTATGGCTT CATAATATTC CATGAGTCTG GATTTGGTTA 001600
001601 CAGATAGAGC TGGACAAGCC TTAGCTATAT CTAATGGCTT TTGACATGTT ATATCAATTT CTTACTGCTT TTGTAAATGA 001680
001681 ATATATTAAG AAGAAAAAAT TACAAATGAC CCTTTCTTCA CAAACTTTTA GGGTAATCAA GTTCAGTTAT TAAAAAATGG 001760
001761 ATGTTTGCAA CATTCATAGT AATTATTTTC AGAAAATTAA AAATGATTAA AAATTATATT TTCATCCCAT TCAGATATTA 001840
001841 TATATTTAAC TGTGAGATAA TTCTCAGAGA TAAATGTCAA CTTTTAAAAA ATGCTAAATA AATTAAATCA AAATATCCCC 001920
001921 TCTAAAATAA ATAAA
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