Difference between revisions of "ENST00000336905.3"
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sequence = <dnaseq>GCTTCATGAATGCACACAGTCACGTCGCAGAAGTGCCCACCCAGCTTCTGCCCATTGAGGGTCTCAAGCAGAGAGCGTGAGAAGTTCTGCAGATGTATGTGGCGCACAGCCTCTACAGCCGCCGACTCCGACTCCTCTTCAGGCACCAGGCCTGGCCGTGGCCGCCTTCTCACCGACTCCAAGGCAGCACTTCCGGGCGCTTCTCTTTATTTTTATACAGTTTTATTGAGATATAATTTACATGCTATCCAGCCCATCTATTTCAAGTGTACCATGCAAGGGGTTTGTATATATTCACAGAGTTGTGTATCCATCACCATCGTTTTAGAACATTCATCACTCCAGAAGAAACTACGTACCCATCAGCAGCCACTGCCCATTTCCCTGATCTGCCCCGCCCTAGGAAATCCGTAATCACTTTCAGTCTATGGATTTGCCTATTCTAGACCATTCATATAAATGAAGTCACACAACACTGGGTCTTATGTGACTGGCTTCTATCAAAGTTTGCAAGGTTCATTTATGTTCATGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTGTAGAAAGACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAGGTGAATGATCCTGCCAGGACTCTTAGCCTCCCTGGGTCTCAATTTCTTTATCTGTTTCATGGGAATGAGGATCTCTGCTGGGTGGTTGGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATATAAAAAAAAAGTTGAAGGAGGCAGAAGGGAGAGTGATGCACGATGGGCAAGGACTTCACCTGCTGTTGCTGGCTTTGAGGATGGAGGAAGGAGGCCACAAACCTAGAAGCTGGAGCCCCTAGAAGCTAGAAAAGGCAGGGACCCGATTCTTTCCTTGAGCCTCCAGAAGGGACACAGCCCCGCCAGCACCTTGACTTTAGCCTGGTGAGATCCTCTTAGGACTTTTGGCAATCAGAACTATAAGACAGAAATGGAAGCCACTGAGTCTGTAGCTGTTTGTTGCAGCAGCAATAGAAAACTAATGCAGGGCCCAAGAAATCACTGGTGATGAGATCGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAAGAGGTCTGGATCTGTGGTGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATCGGGAAAGTGGGCTCAAGAGGTCTGGATCTGTGGTGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGGGGTGGGGATCTGGA</dnaseq>| | sequence = <dnaseq>GCTTCATGAATGCACACAGTCACGTCGCAGAAGTGCCCACCCAGCTTCTGCCCATTGAGGGTCTCAAGCAGAGAGCGTGAGAAGTTCTGCAGATGTATGTGGCGCACAGCCTCTACAGCCGCCGACTCCGACTCCTCTTCAGGCACCAGGCCTGGCCGTGGCCGCCTTCTCACCGACTCCAAGGCAGCACTTCCGGGCGCTTCTCTTTATTTTTATACAGTTTTATTGAGATATAATTTACATGCTATCCAGCCCATCTATTTCAAGTGTACCATGCAAGGGGTTTGTATATATTCACAGAGTTGTGTATCCATCACCATCGTTTTAGAACATTCATCACTCCAGAAGAAACTACGTACCCATCAGCAGCCACTGCCCATTTCCCTGATCTGCCCCGCCCTAGGAAATCCGTAATCACTTTCAGTCTATGGATTTGCCTATTCTAGACCATTCATATAAATGAAGTCACACAACACTGGGTCTTATGTGACTGGCTTCTATCAAAGTTTGCAAGGTTCATTTATGTTCATGGGCTGACCCCACATTGGACACCGCTGCATCCATGTCCATCACACAACACAGCTGCCGTTTCTTCTGCCTGCTTATGGGAAAGTCCCCTCTTCTCCTCCGTTTTCTTCTCTTCCTGCCCTATCACACCGTGCACTTCTCCCTTTCCTTAAAGAACCACCATCAACTTTAGGAGGAGGGAAAGGGGTGGCTCTGGCAGGAAAAGCCAGAATCCCCTCTAGCCAGCAGAGAGAGAGAGGAATGGCTGCATGTTTTCTCCCCCAGTCCAAGGCACTGGGTCTTGGCTGGGTTGAAGGTTCCAAGCTGCTCTCCTGCTGTGTCGGTGAGTTCTGGTCAACCTGCAACCTCCTGATATGGCCATTGCAGTTCATCGAGTCTTCAGGGACTCCCCATGGCCTGGAGTACTTTGCCTTGCTTACACGGGAGAGGAGAATGGATTTATAGAGAACATCATCTAAATCCAACTTGACCATTGTGTGGCCACACTTGCTAGATTGCTATAGTCTAAATCTAGCATTGTAGAAAGACGGGGGAGCTTGGAGCTGCACAAACCCAGGTCTGGAACTGGCTCCTTACCTTGGAAGGTGAATGATCCTGCCAGGACTCTTAGCCTCCCTGGGTCTCAATTTCTTTATCTGTTTCATGGGAATGAGGATCTCTGCTGGGTGGTTGGGTGATGTGGGGGCTGTGTGAAAACAGCTTGTCAATACAAGCCAAAATAGAAATATTTCTCCACAGAGTATGAAGGTCAAATGAGAGAATACATTTAAATTAAATGGAAAATTAAAATGGTAAAAAATGCAAAGCTGTATTGAAAGTTCCGAGCTTCTCTATAAGGAGCTTTTTGACTATGGAAGAATCCTGTACTCGTTCCCCCTAAATATAAAAAAAAAGTTGAAGGAGGCAGAAGGGAGAGTGATGCACGATGGGCAAGGACTTCACCTGCTGTTGCTGGCTTTGAGGATGGAGGAAGGAGGCCACAAACCTAGAAGCTGGAGCCCCTAGAAGCTAGAAAAGGCAGGGACCCGATTCTTTCCTTGAGCCTCCAGAAGGGACACAGCCCCGCCAGCACCTTGACTTTAGCCTGGTGAGATCCTCTTAGGACTTTTGGCAATCAGAACTATAAGACAGAAATGGAAGCCACTGAGTCTGTAGCTGTTTGTTGCAGCAGCAATAGAAAACTAATGCAGGGCCCAAGAAATCACTGGTGATGAGATCGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAAGAGGTCTGGATCTGTGGTGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATCGGGAAAGTGGGCTCAAGAGGTCTGGATCTGTGGTGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGAAAGTGGGCTCAGGAGGTCTGGATCTGTGATGAGATGGGGGAAGTGGGCTCAGGAGGTCTGGATCTGGGGTGGGGATCTGGA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-LIMS3-1]][[Category:NONHSAG028908]] | + | [[Category:Intergenic]][[Category:lnc-LIMS3-1]][[Category:NONHSAG028908]][[Category:ENSG00000204588.5]] |
Revision as of 18:39, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000336905.3 |
Source |
Gencode19 |
Same with |
lnc-LIMS3-1:2,NONHSAT073166 |
Classification |
intergenic |
Length |
2271 nt |
Genomic location |
chr2+:110745849..110753717 |
Exon number |
2 |
Exons |
110745849..110746379,110751978..110753717 |
Genome context |
|
Sequence |
000001 GCTTCATGAA TGCACACAGT CACGTCGCAG AAGTGCCCAC CCAGCTTCTG CCCATTGAGG GTCTCAAGCA GAGAGCGTGA 000080
000081 GAAGTTCTGC AGATGTATGT GGCGCACAGC CTCTACAGCC GCCGACTCCG ACTCCTCTTC AGGCACCAGG CCTGGCCGTG 000160 000161 GCCGCCTTCT CACCGACTCC AAGGCAGCAC TTCCGGGCGC TTCTCTTTAT TTTTATACAG TTTTATTGAG ATATAATTTA 000240 000241 CATGCTATCC AGCCCATCTA TTTCAAGTGT ACCATGCAAG GGGTTTGTAT ATATTCACAG AGTTGTGTAT CCATCACCAT 000320 000321 CGTTTTAGAA CATTCATCAC TCCAGAAGAA ACTACGTACC CATCAGCAGC CACTGCCCAT TTCCCTGATC TGCCCCGCCC 000400 000401 TAGGAAATCC GTAATCACTT TCAGTCTATG GATTTGCCTA TTCTAGACCA TTCATATAAA TGAAGTCACA CAACACTGGG 000480 000481 TCTTATGTGA CTGGCTTCTA TCAAAGTTTG CAAGGTTCAT TTATGTTCAT GGGCTGACCC CACATTGGAC ACCGCTGCAT 000560 000561 CCATGTCCAT CACACAACAC AGCTGCCGTT TCTTCTGCCT GCTTATGGGA AAGTCCCCTC TTCTCCTCCG TTTTCTTCTC 000640 000641 TTCCTGCCCT ATCACACCGT GCACTTCTCC CTTTCCTTAA AGAACCACCA TCAACTTTAG GAGGAGGGAA AGGGGTGGCT 000720 000721 CTGGCAGGAA AAGCCAGAAT CCCCTCTAGC CAGCAGAGAG AGAGAGGAAT GGCTGCATGT TTTCTCCCCC AGTCCAAGGC 000800 000801 ACTGGGTCTT GGCTGGGTTG AAGGTTCCAA GCTGCTCTCC TGCTGTGTCG GTGAGTTCTG GTCAACCTGC AACCTCCTGA 000880 000881 TATGGCCATT GCAGTTCATC GAGTCTTCAG GGACTCCCCA TGGCCTGGAG TACTTTGCCT TGCTTACACG GGAGAGGAGA 000960 000961 ATGGATTTAT AGAGAACATC ATCTAAATCC AACTTGACCA TTGTGTGGCC ACACTTGCTA GATTGCTATA GTCTAAATCT 001040 001041 AGCATTGTAG AAAGACGGGG GAGCTTGGAG CTGCACAAAC CCAGGTCTGG AACTGGCTCC TTACCTTGGA AGGTGAATGA 001120 001121 TCCTGCCAGG ACTCTTAGCC TCCCTGGGTC TCAATTTCTT TATCTGTTTC ATGGGAATGA GGATCTCTGC TGGGTGGTTG 001200 001201 GGTGATGTGG GGGCTGTGTG AAAACAGCTT GTCAATACAA GCCAAAATAG AAATATTTCT CCACAGAGTA TGAAGGTCAA 001280 001281 ATGAGAGAAT ACATTTAAAT TAAATGGAAA ATTAAAATGG TAAAAAATGC AAAGCTGTAT TGAAAGTTCC GAGCTTCTCT 001360 001361 ATAAGGAGCT TTTTGACTAT GGAAGAATCC TGTACTCGTT CCCCCTAAAT ATAAAAAAAA AGTTGAAGGA GGCAGAAGGG 001440 001441 AGAGTGATGC ACGATGGGCA AGGACTTCAC CTGCTGTTGC TGGCTTTGAG GATGGAGGAA GGAGGCCACA AACCTAGAAG 001520 001521 CTGGAGCCCC TAGAAGCTAG AAAAGGCAGG GACCCGATTC TTTCCTTGAG CCTCCAGAAG GGACACAGCC CCGCCAGCAC 001600 001601 CTTGACTTTA GCCTGGTGAG ATCCTCTTAG GACTTTTGGC AATCAGAACT ATAAGACAGA AATGGAAGCC ACTGAGTCTG 001680 001681 TAGCTGTTTG TTGCAGCAGC AATAGAAAAC TAATGCAGGG CCCAAGAAAT CACTGGTGAT GAGATCGGGA AAGTGGGCTC 001760 001761 AGGAGGTCTG GATCTGTGAT GAGATGGGGA AAGTGGGCTC AAGAGGTCTG GATCTGTGGT GAGATGGGGG AAGTGGGCTC 001840 001841 AGGAGGTCTG GATCTGTGAT GAGATGGGGA AAGTGGGCTC AGGAGGTCTG GATCTGTGAT GAGATGGGGA AAGTGGGCTC 001920 001921 AGGAGGTCTG GATCTGTGAT GAGATGGGGG AAGTGGGCTC AGGAGGTCTG GATCTGTGAT GAGATGGGGG AAGTGGGCTC 002000 002001 AGGAGGTCTG GATCTGTGAT GAGATGGGGG AAGTGGGCTC AGGAGGTCTG GATCTGTGAT GAGATGGGGA AAGTGGGCTC 002080 002081 AGGAGGTCTG GATCTGTGAT GAGATCGGGA AAGTGGGCTC AAGAGGTCTG GATCTGTGGT GAGATGGGGG AAGTGGGCTC 002160 002161 AGGAGGTCTG GATCTGTGAT GAGATGGGGA AAGTGGGCTC AGGAGGTCTG GATCTGTGAT GAGATGGGGG AAGTGGGCTC 002240 002241 AGGAGGTCTG GATCTGGGGT GGGGATCTGG A |
Predicted Small Protein
Name | ENST00000336905.3_smProtein_92:235 |
Length | 48 |
Molecular weight | 5709.5488 |
Aromaticity | 0.191489361702 |
Instability index | 65.4659574468 |
Isoelectric point | 11.3629760742 |
Runs | 9 |
Runs residual | 0.0252127659574 |
Runs probability | 0.0156627215451 |
Amino acid sequence | MYVAHSLYSRRLRLLFRHQAWPWPPSHRLQGSTSGRFSLFLYSFIEI |
Secondary structure | LEELLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLEEHHHHHHEEL |
PRMN | - |
PiMo | - |