Difference between revisions of "ENST00000497774.1"
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sequence = <dnaseq>AGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTGGGGTCGGCTTGCAGTTTGGGGTACCCCGAGGGCGGTGTACGTCGGTAAGATTGTAACAGTATTACTGGAAGACTTATTCGACTGTCCTGATGATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGAAACCTCTACAACTTAGTTGACCGTAACTGCCAGAGCCCTGCCCTGAATTCCTGTCCTTACTCCCTCTTTAAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTGAGAGGCTCTCTGGTGTAGGGTTTAACATGGAACGTAGTTTTGTCACTTGAATGCACGGAAATTGGCGTTTTGACAGTTTTCTACGTTTAGGTGTTTTATACACTTTAGGGTAACGTTATCATGTCATTGCATAGGGTGGAACTTAAATAGAAACTGGAGATGGCTGCTTCAGCCACAGTCCTAACCTAGAACTGCATTTAAAGCAAACTGATAATGCAGAAACAAACTCCTTCGTTAAGAAATGTCTCCAGTAGCAGGGTTAGCTTAAGTTTCAGGTAGGGTCTAGATCTGCGGTTGGAACAGTACTGGAGGGTTGTGAGGTGCTTGACTGCTCTGATGAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAA</dnaseq>| | sequence = <dnaseq>AGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTAAGTTGGGGTCGGCTTGCAGTTTGGGGTACCCCGAGGGCGGTGTACGTCGGTAAGATTGTAACAGTATTACTGGAAGACTTATTCGACTGTCCTGATGATACTTGTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGACGTCTAATGTCTATCTGACCGCAGTCGCTGAAACCTCTACAACTTAGTTGACCGTAACTGCCAGAGCCCTGCCCTGAATTCCTGTCCTTACTCCCTCTTTAAGATTGCGTACCCACTGCAGAGTGCTGAAGACGGGGTAGCCACGAGGTGAGAGGCTCTCTGGTGTAGGGTTTAACATGGAACGTAGTTTTGTCACTTGAATGCACGGAAATTGGCGTTTTGACAGTTTTCTACGTTTAGGTGTTTTATACACTTTAGGGTAACGTTATCATGTCATTGCATAGGGTGGAACTTAAATAGAAACTGGAGATGGCTGCTTCAGCCACAGTCCTAACCTAGAACTGCATTTAAAGCAAACTGATAATGCAGAAACAAACTCCTTCGTTAAGAAATGTCTCCAGTAGCAGGGTTAGCTTAAGTTTCAGGTAGGGTCTAGATCTGCGGTTGGAACAGTACTGGAGGGTTGTGAGGTGCTTGACTGCTCTGATGAAATCACTAATAGGAAGTGCCGTCAGAAGCGATAACTGACGAAGACTACTCCTGTCTGATTGCAGTCAAGTCTTCACCACTTGCTGGTTCCCAGGAGTAAACTTGTTTGAACGGTGACCTAATTGCTATATTCACCTAGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTTTGAGAACAGAGTGCTGTTTTAGAGCTGGCAGCAGCATCTCAGCCCAAGAGAAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]] | + | [[Category:Intergenic]][[Category:lnc-TRPV2-1]][[Category:NONHSAG020957]][[Category:ENSG00000175061.13]] |
Revision as of 18:44, 15 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000497774.1 |
Source |
Gencode19 |
Same with |
lnc-TRPV2-1:6,NONHSAT145950 |
Classification |
intergenic |
Length |
1662 nt |
Genomic location |
chr17+:16342325..16345309 |
Exon number |
4 |
Exons |
16342325..16342374,16342641..16343567,16344388..16344444,16344682..16345309 |
Genome context |
|
Sequence |
000001 AGGGCCTGGC GCACATAAGG TGTGACCTTT TCATTCCCGT TGTTATGGAG GGCCACATCT GCCAGAGCCT GGAGTCTGCG 000080
000081 AAGGCCGGGA CCCGGTTCCC CGGCCCACAG TGGGGGTGTG CAAACCCGAG AGAACTGGGT AAGTTGGGGT CGGCTTGCAG 000160 000161 TTTGGGGTAC CCCGAGGGCG GTGTACGTCG GTAAGATTGT AACAGTATTA CTGGAAGACT TATTCGACTG TCCTGATGAT 000240 000241 ACTTGTAATA GGAAGTGCCG TCAGAAGCGA TAACTGACGA CGTCTAATGT CTATCTGACC GCAGTCGCTG AAACCTCTAC 000320 000321 AACTTAGTTG ACCGTAACTG CCAGAGCCCT GCCCTGAATT CCTGTCCTTA CTCCCTCTTT AAGATTGCGT ACCCACTGCA 000400 000401 GAGTGCTGAA GACGGGGTAG CCACGAGGTG AGAGGCTCTC TGGTGTAGGG TTTAACATGG AACGTAGTTT TGTCACTTGA 000480 000481 ATGCACGGAA ATTGGCGTTT TGACAGTTTT CTACGTTTAG GTGTTTTATA CACTTTAGGG TAACGTTATC ATGTCATTGC 000560 000561 ATAGGGTGGA ACTTAAATAG AAACTGGAGA TGGCTGCTTC AGCCACAGTC CTAACCTAGA ACTGCATTTA AAGCAAACTG 000640 000641 ATAATGCAGA AACAAACTCC TTCGTTAAGA AATGTCTCCA GTAGCAGGGT TAGCTTAAGT TTCAGGTAGG GTCTAGATCT 000720 000721 GCGGTTGGAA CAGTACTGGA GGGTTGTGAG GTGCTTGACT GCTCTGATGA AATCACTAAT AGGAAGTGCC GTCAGAAGCG 000800 000801 ATAACTGACG AAGACTACTC CTGTCTGATT GCAGTCAAGT CTTCACCACT TGCTGGTTCC CAGGAGTAAA CTTGTTTGAA 000880 000881 CGGTGACCTA ATTGCTATAT TCACCTAGGT TGCAAATTCG TGAAGAATCA GCATCATGTT TGGCAGCTGA GTATTGGAGC 000960 000961 CAGGAGCCTG CCATGAGGTT TTGAGAACAG AGTGCTGTTT TAGAGCTGGC AGCAGCATCT CAGCCCAAGA GAAGGTTATA 001040 001041 TTCCCAGAGG ATGTCAGTCC CAAGGACCAG TAGCTGCCAT CAGTTTGGAT TCTGAAAACT AACTGGCATC AACACTGGGT 001120 001121 GTAGAAACAT GCTTGCCTTA TGTATCAGAG GACATGCTCA GCAGATCCAA GAGATATATT TGGCAACTTT TTCTAGAAAA 001200 001201 GGCACATTGG GTATCATTCA TTACATTCTT GAGTTTTTTT GGGTTTTTTT TTTTTTTTTT GAGACAGTCT TGCTGTATTG 001280 001281 CCCAGGCTGG AGTGTGGTGG CACAATCACA GCTCATTGCA TCCTCAATCA CCCAGGCCTA AGCAATCCTC CCACCTTGTA 001360 001361 GCTGGGACTA CAGCTCACAG CACACCTGGC TAAAATTTTT TTTTTGTTGA GACGGATTCT CTATGTTGCC CAGGCTGGTC 001440 001441 TCAGGCTCCT GGGCTCAGAT GGTCCTCCTG CCTCAGCTTC CAAAGGCACA GGCCAAGTTG TAGCTTTGTC CCTTGCCATC 001520 001521 ATGCCCAACA AGAGGTTCTA TACCTTTTAA TGAATTGACT TTCATAAATT GGTTATGTTG GTGGGCAAAG TTCTTTAAGC 001600 001601 TGGAAATTGT AAATTCCTCC TGAAATGTTT TTTCATGCAG TTACCATGAA CTAATACTAC AA |
Predicted Small Protein
Name | ENST00000497774.1_smProtein_44:193 |
Length | 50 |
Molecular weight | 5160.8068 |
Aromaticity | 0.0612244897959 |
Instability index | 56.0510204082 |
Isoelectric point | 8.63214111328 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.00718365424248 |
Amino acid sequence | MEGHICQSLESAKAGTRFPGPQWGCANPRELGKLGSACSLGYPEGGVRR |
Secondary structure | LLLEELLLHHHLLLLLLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLEEL |
PRMN | - |
PiMo | - |