Difference between revisions of "ENST00000414769.1"
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sequence = <dnaseq>GAAGGTAGAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGAATGTTTTTCTTGAAGGCATCCAGCATCTCCAGTTAGCAGTACTGATTTTTTTTCCCCCCAACAAAGGAACACTACATCAACACTGTTGGCGGGGACCTGGACACAGAAGACTCCTGTTTCAAGAAAATACAATCATCTCTCAAAGGCTGTAATTTATATGCATTTTAAAACTCTAGGCATTGAAAACCACCCAAGTGTCCCAAATAGAAGGGTAATATATAATCAATCACTCAGTGTAATATTATACATCCTTTAAAAATGTTATTGGGAAATGTTTTATGATCTGTAAGTCCAAGGAATCCTCTCCCACCATTTCTTTCCCCCCGCTGTTCCCCCATACCCACACTTCTTTGTTCCAATTGGCATGTAAATTTGGTTTTCCCGCCAAATGAGTCAGTCATGATGGGAACCTCAACTGATTTGAACAGATGTGTGTCAATGTTACTTGGAAAACTAGATGTCAATAACCAGGGTCACAGAAAAAGGCAGTGGTCACAACTCTGTAAAAATGTATGCATGCACACAGACAAGAACTAAAGTGGAACCCCACACAGG</dnaseq>| | sequence = <dnaseq>GAAGGTAGAAGGTGGGGTCTGCCGGACGCGTGTTCCTGCCACCAGGTGCCCGCTCCCCGCGAGGCCGGCTCAGGAGCAGAAGGAAGCCCGGTGCCAGCCAGCCTTCCTGAAAGACCAAGCCCGCGCCATCCGGCTTCCTCCAGTGGACGCCTGCAGGACCCAGGAATGTTTTTCTTGAAGGCATCCAGCATCTCCAGTTAGCAGTACTGATTTTTTTTCCCCCCAACAAAGGAACACTACATCAACACTGTTGGCGGGGACCTGGACACAGAAGACTCCTGTTTCAAGAAAATACAATCATCTCTCAAAGGCTGTAATTTATATGCATTTTAAAACTCTAGGCATTGAAAACCACCCAAGTGTCCCAAATAGAAGGGTAATATATAATCAATCACTCAGTGTAATATTATACATCCTTTAAAAATGTTATTGGGAAATGTTTTATGATCTGTAAGTCCAAGGAATCCTCTCCCACCATTTCTTTCCCCCCGCTGTTCCCCCATACCCACACTTCTTTGTTCCAATTGGCATGTAAATTTGGTTTTCCCGCCAAATGAGTCAGTCATGATGGGAACCTCAACTGATTTGAACAGATGTGTGTCAATGTTACTTGGAAAACTAGATGTCAATAACCAGGGTCACAGAAAAAGGCAGTGGTCACAACTCTGTAAAAATGTATGCATGCACACAGACAAGAACTAAAGTGGAACCCCACACAGG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]] | + | [[Category:Intergenic]][[Category:ENSG00000223749.3]][[Category:lnc-PLAC1-1]][[Category:Transcripts]] |
Revision as of 09:28, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000414769.1 |
| Source |
Gencode19 |
| Same with |
lnc-PLAC1-1:2 |
| Classification |
intergenic |
| Length |
720 nt |
| Genomic location |
chrX-:133677473..133680660 |
| Exon number |
3 |
| Exons |
133677473..133678029,133678744..133678827,133680582..133680660 |
| Genome context |
|
| Sequence |
000001 GAAGGTAGAA GGTGGGGTCT GCCGGACGCG TGTTCCTGCC ACCAGGTGCC CGCTCCCCGC GAGGCCGGCT CAGGAGCAGA 000080
000081 AGGAAGCCCG GTGCCAGCCA GCCTTCCTGA AAGACCAAGC CCGCGCCATC CGGCTTCCTC CAGTGGACGC CTGCAGGACC 000160 000161 CAGGAATGTT TTTCTTGAAG GCATCCAGCA TCTCCAGTTA GCAGTACTGA TTTTTTTTCC CCCCAACAAA GGAACACTAC 000240 000241 ATCAACACTG TTGGCGGGGA CCTGGACACA GAAGACTCCT GTTTCAAGAA AATACAATCA TCTCTCAAAG GCTGTAATTT 000320 000321 ATATGCATTT TAAAACTCTA GGCATTGAAA ACCACCCAAG TGTCCCAAAT AGAAGGGTAA TATATAATCA ATCACTCAGT 000400 000401 GTAATATTAT ACATCCTTTA AAAATGTTAT TGGGAAATGT TTTATGATCT GTAAGTCCAA GGAATCCTCT CCCACCATTT 000480 000481 CTTTCCCCCC GCTGTTCCCC CATACCCACA CTTCTTTGTT CCAATTGGCA TGTAAATTTG GTTTTCCCGC CAAATGAGTC 000560 000561 AGTCATGATG GGAACCTCAA CTGATTTGAA CAGATGTGTG TCAATGTTAC TTGGAAAACT AGATGTCAAT AACCAGGGTC 000640 000641 ACAGAAAAAG GCAGTGGTCA CAACTCTGTA AAAATGTATG CATGCACACA GACAAGAACT AAAGTGGAAC CCCACACAGG 000720 |
Predicted Small Protein
| Name | ENST00000414769.1_smProtein_443:556 |
| Length | 38 |
| Molecular weight | 4124.8464 |
| Aromaticity | 0.135135135135 |
| Instability index | 65.8432432432 |
| Isoelectric point | 9.30364990234 |
| Runs | 5 |
| Runs residual | 0.0446317877511 |
| Runs probability | 0.0455043278572 |
| Amino acid sequence | MICKSKESSPTISFPPLFPHTHTSLFQLACKFGFPAK |
| Secondary structure | LEELLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
| Name | ENST00000414769.1_smProtein_443:556 |
| Length | 37 |
| Molecular weight | 4124.8464 |
| Aromaticity | 0.135135135135 |
| Instability index | 65.8432432432 |
| Isoelectric point | 9.30364990234 |
| Runs | 5 |
| Runs residual | 0.0446317877511 |
| Runs probability | 0.0455043278572 |
| Amino acid sequence | MICKSKESSPTISFPPLFPHTHTSLFQLACKFGFPAK |
| Secondary structure | LEELLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLLLL |
| PRMN | - |
| PiMo | - |
