Difference between revisions of "NONHSAT092143"
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sequence = <dnaseq>AGTATGGGCAGGGCAGAGGAAAAATGAAAAATGGGAAACCCCCATGGACTTAGGGCCCCCACAAAGAGAAACCATGTGCCTTCTCCCCACTTCCCTTCTGGCTTGGGCAAATGAGGCTCCCTTTAGGGGTAGAGGTACTCTACAGGGGCTATGTTCCCTTTAGGGGTAGAGGTAGTCTACAGGGGCCAGCTGGGCAGAGATGAAATCTTGCAAAGGAACCCTTCTTACACTCGAAAAGCAAGAATAGCAAAGGGACTTTGGGAAGGACATAAAACAAGAAAAGGAAGCTCCTCACCAACAGCTCCCAGATGGAGGGAGTTTGTGTGTCTAGCATTTTCACCAAAGTGCTGCTCATCCTGATGCACAGATGCAGATTGGAGCTGCTGCCTGTGCCCTCACCATGGGTATGTACCCACCACAGGCATTCCCAGGTGATGCGGGGGCAGAGGATTCCCTCTTTCCACTCAGGATAACAACCCCTCGATGGGGTTTTCAACAAGTATAGAAAGCTCCTGGACTCAGCCAAGACCCTCACCTACAGTCCCAGTCCTCCCACCTTCTTCAGGTCTCTAGAAGACAGAACTGATGGGTTTACAACATCCTATTATCCAGCACTAGTCCTAGGTTGTGGATGTAGGGAAAGGCCAGGTAAACAAGGAAGGGAGAACAGGTGAATGACCCCAATTGTTTGAAACCAAAAGAGCAGAATTGCCCCTAATTGATTTAAGTAAACAGCAAGTAACATAGGTCTGTTAAATAGAAGAGGATGTGAGCACCAGATGCACGTGATAAAGACCATGCTCTGGAAGATTCATTCCAAGGAGTAGAAGTGGTATTTACTCAGGGCATTTAAGGAGAGCAGGGACTCTGAAATGAGGTGAGAGAAAAGATAAGACATGCAGGAACAGCTGGCAACACCAAGAAAGAATTTAAGGAGAGGGATCTCTCTGTTAGAGAACTTAACATTACCCTAGGAACAGCAAGAGCATCATCAGCCCCAGGAAAATCTACCTCTGATATGGAGACCAGGCTCAAGAAAATCCCCTAGAACCCAGAGAAAAAGTGCAAAACAAGGAAAATGGCCAAAGAGAATATCATAGATACAGAGATCAGACAATGAGAATCCAGAGTCTTGTTAAGTGATAGAAGGAAAATACTAACAGAACACATGTAACAGGAACAACATTTTAGAGGAAACAGGACAAAAACTTCCCTAAACTCAAGATACTACACCAGAAGTGGGCAGTACTCACTATGTTCAGGGGAACAAAAAGATAAAAACTAAAAAGCATCAGACTGTTTTTTGTGTGAAGGAAATTTGTAAGGTAGGAGAATTAGGTCACTTACTACAGCACAAATTGCATGTCTATCTAAATTGACGTTTAAGTGCAAAAGCATGGATATTACTCATGCAGTTTTACTGGAAAACCATACAGATGTTTTTCAGGAATGTACAGAATGAATCAAAGGAAATAACTGATCGACAGGAAAACTGTAGGAAATTTGTGGGCTGGCTGTGAGGCAGTGGCTCCTATTATGTACAATTTTAGTGCTAAGTACTGTGTTAATGATGGCTATCAAACAATATGTTAACATCTGAAAGGAAATATGTATATTGAGCATAATAAATATTTTATAAATAACAATAAATCATTTGATTTT</dnaseq>| | sequence = <dnaseq>AGTATGGGCAGGGCAGAGGAAAAATGAAAAATGGGAAACCCCCATGGACTTAGGGCCCCCACAAAGAGAAACCATGTGCCTTCTCCCCACTTCCCTTCTGGCTTGGGCAAATGAGGCTCCCTTTAGGGGTAGAGGTACTCTACAGGGGCTATGTTCCCTTTAGGGGTAGAGGTAGTCTACAGGGGCCAGCTGGGCAGAGATGAAATCTTGCAAAGGAACCCTTCTTACACTCGAAAAGCAAGAATAGCAAAGGGACTTTGGGAAGGACATAAAACAAGAAAAGGAAGCTCCTCACCAACAGCTCCCAGATGGAGGGAGTTTGTGTGTCTAGCATTTTCACCAAAGTGCTGCTCATCCTGATGCACAGATGCAGATTGGAGCTGCTGCCTGTGCCCTCACCATGGGTATGTACCCACCACAGGCATTCCCAGGTGATGCGGGGGCAGAGGATTCCCTCTTTCCACTCAGGATAACAACCCCTCGATGGGGTTTTCAACAAGTATAGAAAGCTCCTGGACTCAGCCAAGACCCTCACCTACAGTCCCAGTCCTCCCACCTTCTTCAGGTCTCTAGAAGACAGAACTGATGGGTTTACAACATCCTATTATCCAGCACTAGTCCTAGGTTGTGGATGTAGGGAAAGGCCAGGTAAACAAGGAAGGGAGAACAGGTGAATGACCCCAATTGTTTGAAACCAAAAGAGCAGAATTGCCCCTAATTGATTTAAGTAAACAGCAAGTAACATAGGTCTGTTAAATAGAAGAGGATGTGAGCACCAGATGCACGTGATAAAGACCATGCTCTGGAAGATTCATTCCAAGGAGTAGAAGTGGTATTTACTCAGGGCATTTAAGGAGAGCAGGGACTCTGAAATGAGGTGAGAGAAAAGATAAGACATGCAGGAACAGCTGGCAACACCAAGAAAGAATTTAAGGAGAGGGATCTCTCTGTTAGAGAACTTAACATTACCCTAGGAACAGCAAGAGCATCATCAGCCCCAGGAAAATCTACCTCTGATATGGAGACCAGGCTCAAGAAAATCCCCTAGAACCCAGAGAAAAAGTGCAAAACAAGGAAAATGGCCAAAGAGAATATCATAGATACAGAGATCAGACAATGAGAATCCAGAGTCTTGTTAAGTGATAGAAGGAAAATACTAACAGAACACATGTAACAGGAACAACATTTTAGAGGAAACAGGACAAAAACTTCCCTAAACTCAAGATACTACACCAGAAGTGGGCAGTACTCACTATGTTCAGGGGAACAAAAAGATAAAAACTAAAAAGCATCAGACTGTTTTTTGTGTGAAGGAAATTTGTAAGGTAGGAGAATTAGGTCACTTACTACAGCACAAATTGCATGTCTATCTAAATTGACGTTTAAGTGCAAAAGCATGGATATTACTCATGCAGTTTTACTGGAAAACCATACAGATGTTTTTCAGGAATGTACAGAATGAATCAAAGGAAATAACTGATCGACAGGAAAACTGTAGGAAATTTGTGGGCTGGCTGTGAGGCAGTGGCTCCTATTATGTACAATTTTAGTGCTAAGTACTGTGTTAATGATGGCTATCAAACAATATGTTAACATCTGAAAGGAAATATGTATATTGAGCATAATAAATATTTTATAAATAACAATAAATCATTTGATTTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG036097]] | + | [[Category:Intergenic]][[Category:NONHSAG036097]][[Category:Transcripts]] |
Revision as of 09:44, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT092143 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1662 nt |
Genomic location |
chr3+:131106007..131107668 |
Exon number |
1 |
Exons |
131106007..131107668 |
Genome context |
|
Sequence |
000001 AGTATGGGCA GGGCAGAGGA AAAATGAAAA ATGGGAAACC CCCATGGACT TAGGGCCCCC ACAAAGAGAA ACCATGTGCC 000080
000081 TTCTCCCCAC TTCCCTTCTG GCTTGGGCAA ATGAGGCTCC CTTTAGGGGT AGAGGTACTC TACAGGGGCT ATGTTCCCTT 000160 000161 TAGGGGTAGA GGTAGTCTAC AGGGGCCAGC TGGGCAGAGA TGAAATCTTG CAAAGGAACC CTTCTTACAC TCGAAAAGCA 000240 000241 AGAATAGCAA AGGGACTTTG GGAAGGACAT AAAACAAGAA AAGGAAGCTC CTCACCAACA GCTCCCAGAT GGAGGGAGTT 000320 000321 TGTGTGTCTA GCATTTTCAC CAAAGTGCTG CTCATCCTGA TGCACAGATG CAGATTGGAG CTGCTGCCTG TGCCCTCACC 000400 000401 ATGGGTATGT ACCCACCACA GGCATTCCCA GGTGATGCGG GGGCAGAGGA TTCCCTCTTT CCACTCAGGA TAACAACCCC 000480 000481 TCGATGGGGT TTTCAACAAG TATAGAAAGC TCCTGGACTC AGCCAAGACC CTCACCTACA GTCCCAGTCC TCCCACCTTC 000560 000561 TTCAGGTCTC TAGAAGACAG AACTGATGGG TTTACAACAT CCTATTATCC AGCACTAGTC CTAGGTTGTG GATGTAGGGA 000640 000641 AAGGCCAGGT AAACAAGGAA GGGAGAACAG GTGAATGACC CCAATTGTTT GAAACCAAAA GAGCAGAATT GCCCCTAATT 000720 000721 GATTTAAGTA AACAGCAAGT AACATAGGTC TGTTAAATAG AAGAGGATGT GAGCACCAGA TGCACGTGAT AAAGACCATG 000800 000801 CTCTGGAAGA TTCATTCCAA GGAGTAGAAG TGGTATTTAC TCAGGGCATT TAAGGAGAGC AGGGACTCTG AAATGAGGTG 000880 000881 AGAGAAAAGA TAAGACATGC AGGAACAGCT GGCAACACCA AGAAAGAATT TAAGGAGAGG GATCTCTCTG TTAGAGAACT 000960 000961 TAACATTACC CTAGGAACAG CAAGAGCATC ATCAGCCCCA GGAAAATCTA CCTCTGATAT GGAGACCAGG CTCAAGAAAA 001040 001041 TCCCCTAGAA CCCAGAGAAA AAGTGCAAAA CAAGGAAAAT GGCCAAAGAG AATATCATAG ATACAGAGAT CAGACAATGA 001120 001121 GAATCCAGAG TCTTGTTAAG TGATAGAAGG AAAATACTAA CAGAACACAT GTAACAGGAA CAACATTTTA GAGGAAACAG 001200 001201 GACAAAAACT TCCCTAAACT CAAGATACTA CACCAGAAGT GGGCAGTACT CACTATGTTC AGGGGAACAA AAAGATAAAA 001280 001281 ACTAAAAAGC ATCAGACTGT TTTTTGTGTG AAGGAAATTT GTAAGGTAGG AGAATTAGGT CACTTACTAC AGCACAAATT 001360 001361 GCATGTCTAT CTAAATTGAC GTTTAAGTGC AAAAGCATGG ATATTACTCA TGCAGTTTTA CTGGAAAACC ATACAGATGT 001440 001441 TTTTCAGGAA TGTACAGAAT GAATCAAAGG AAATAACTGA TCGACAGGAA AACTGTAGGA AATTTGTGGG CTGGCTGTGA 001520 001521 GGCAGTGGCT CCTATTATGT ACAATTTTAG TGCTAAGTAC TGTGTTAATG ATGGCTATCA AACAATATGT TAACATCTGA 001600 001601 AAGGAAATAT GTATATTGAG CATAATAAAT ATTTTATAAA TAACAATAAA TCATTTGATT TT |
Predicted Small Protein
Name | NONHSAT092143_smProtein_308:472 |
Length | 55 |
Molecular weight | 6208.3639 |
Aromaticity | 0.0555555555556 |
Instability index | 56.7240740741 |
Isoelectric point | 9.79620361328 |
Runs | 10 |
Runs residual | 0.0224932249322 |
Runs probability | 0.0460166048401 |
Amino acid sequence | MEGVCVSSIFTKVLLILMHRCRLELLPVPSPWVCTHHRHSQVMRGQRIPSFHSG |
Secondary structure | LLLEEEEHHHHHHHHHHHHHLEEEELLLLLLLEELLLLLLLLLLLEEELLLLLL |
PRMN | - |
PiMo | - |