Difference between revisions of "NONHSAT028844"
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sequence = <dnaseq>GTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCACAAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGTAAGATTTGAAAAGGATTTCAGGATCTTATGAAGCACCTTTATACAGAGTGGAACTGtttatttccataggtttttggggaacaggtggtattttggttatacaagtaagttctctagtggtgatttttgagattttggtgcacctgtcacccaagcagtatacactgaacccaatTCTTAGTAGTGGTAGAATCCCGTTGAAAGTAACAGAAGTAGCTAGGTTggtggctcacacctgttatcccagcacactggaaggccaaggcagatggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaataccaaaaatatatagcagggcatggtggtaacgctcctgtaatcccagctactaaggtggctgaggcacggcaattgcttgaacctgggagacggacattacattgagccgagattgcaccactgcactccagcctgggcgacagagcaaga</dnaseq>| | sequence = <dnaseq>GTCTTTCTGCCGCCATCTTGGTTCCGCGTTCCCTGCACAAAATGCCCGGCGAAGCCACAGAAACCGTCCCTGCTACAGAGCAGGAGTTGCCGCAGCCCCAGGCTGAGACAGGGTCTGGAACAGAATCTGACAGTGATGAATCAGTACCAGAGCTTGAAGAACAGGATTCCACCCAGGCAACCACACAACAAGCCCAGCTGGCGGCAGCAGCTGAAATTGATGAAGAACCAGTCAGTAAAGCAAAACAGAGTCGGAGTGAAAAGAAGGCACGGAAGGTAAGATTTGAAAAGGATTTCAGGATCTTATGAAGCACCTTTATACAGAGTGGAACTGtttatttccataggtttttggggaacaggtggtattttggttatacaagtaagttctctagtggtgatttttgagattttggtgcacctgtcacccaagcagtatacactgaacccaatTCTTAGTAGTGGTAGAATCCCGTTGAAAGTAACAGAAGTAGCTAGGTTggtggctcacacctgttatcccagcacactggaaggccaaggcagatggatcacttgaggtcaggagttcaagaccagcctggccaacatggcgaaaccccatctctactaaaaataccaaaaatatatagcagggcatggtggtaacgctcctgtaatcccagctactaaggtggctgaggcacggcaattgcttgaacctgggagacggacattacattgagccgagattgcaccactgcactccagcctgggcgacagagcaaga</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG011394]] | + | [[Category:Intergenic]][[Category:NONHSAG011394]][[Category:Transcripts]] |
Revision as of 09:46, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028844 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
768 nt |
Genomic location |
chr12-:57107653..57119085 |
Exon number |
4 |
Exons |
57107653..57108223,57108386..57108471,57118236..57118307,57119047..57119085 |
Genome context |
|
Sequence |
000001 GTCTTTCTGC CGCCATCTTG GTTCCGCGTT CCCTGCACAA AATGCCCGGC GAAGCCACAG AAACCGTCCC TGCTACAGAG 000080
000081 CAGGAGTTGC CGCAGCCCCA GGCTGAGACA GGGTCTGGAA CAGAATCTGA CAGTGATGAA TCAGTACCAG AGCTTGAAGA 000160 000161 ACAGGATTCC ACCCAGGCAA CCACACAACA AGCCCAGCTG GCGGCAGCAG CTGAAATTGA TGAAGAACCA GTCAGTAAAG 000240 000241 CAAAACAGAG TCGGAGTGAA AAGAAGGCAC GGAAGGTAAG ATTTGAAAAG GATTTCAGGA TCTTATGAAG CACCTTTATA 000320 000321 CAGAGTGGAA CTGtttattt ccataggttt ttggggaaca ggtggtattt tggttataca agtaagttct ctagtggtga 000400 000401 tttttgagat tttggtgcac ctgtcaccca agcagtatac actgaaccca atTCTTAGTA GTGGTAGAAT CCCGTTGAAA 000480 000481 GTAACAGAAG TAGCTAGGTT ggtggctcac acctgttatc ccagcacact ggaaggccaa ggcagatgga tcacttgagg 000560 000561 tcaggagttc aagaccagcc tggccaacat ggcgaaaccc catctctact aaaaatacca aaaatatata gcagggcatg 000640 000641 gtggtaacgc tcctgtaatc ccagctacta aggtggctga ggcacggcaa ttgcttgaac ctgggagacg gacattacat 000720 000721 tgagccgaga ttgcaccact gcactccagc ctgggcgaca gagcaaga |
Predicted Small Protein
Name | NONHSAT028844_smProtein_41:307 |
Length | 89 |
Molecular weight | 9619.2665 |
Aromaticity | 0.0227272727273 |
Instability index | 85.3306818182 |
Isoelectric point | 4.36444091797 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.016107016107 |
Amino acid sequence | MPGEATETVPATEQELPQPQAETGSGTESDSDESVPELEEQDSTQATTQQAQLAAAAEID EEPVSKAKQSRSEKKARKVRFEKDFRIL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHLLLLHHHHHHHHHHHHHHHHL LLLLLHHHLLHHHHHHHHHHHHHLLEEL |
PRMN | - |
PiMo | - |