Difference between revisions of "NONHSAT070900"
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sequence = <dnaseq>TTTTCAATCTTCTGGGAAAGAGAAGAATGTTCCCCTCCAGTTCTGGGCATATTGAAGGAGCACGGAGCTGTTGGGAAAAGTTGCAATGCTAACATAGACCTCCACTGAGAGAATTTCAGAATCATTTGGTAGTTGAGAAGCGCCTACTTCATGCGGAGGCCCCGTGGGAGGAGTGGAAGAGTTGGCCTCAGCACTGGCGAGTATCGGATGGGAGCTCTGCTCACTTGATAAACTTCTGCACTGGAGGGGCCTCTCCTCCCCTCGTTCTGCACATGGAGCTCTAATCCCCACGCCTGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGCTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGTCCCCTGACCCCGCGGGTTCTTCACACACCCCCATTCGGCGTAGTACCCAGAGAGCTCAAGATGTGTGGCAGTTTTCGGATGGAAGCTCGAGAGCCCTTAAGTTCT</dnaseq>| | sequence = <dnaseq>TTTTCAATCTTCTGGGAAAGAGAAGAATGTTCCCCTCCAGTTCTGGGCATATTGAAGGAGCACGGAGCTGTTGGGAAAAGTTGCAATGCTAACATAGACCTCCACTGAGAGAATTTCAGAATCATTTGGTAGTTGAGAAGCGCCTACTTCATGCGGAGGCCCCGTGGGAGGAGTGGAAGAGTTGGCCTCAGCACTGGCGAGTATCGGATGGGAGCTCTGCTCACTTGATAAACTTCTGCACTGGAGGGGCCTCTCCTCCCCTCGTTCTGCACATGGAGCTCTAATCCCCACGCCTGGGATGAGTGCAGAATATGCCCCGCAGGGTATTTGTAAAGATGAGCCCAGCAGCTACACATGTACAACTTGCAAACAGCCATTCACCAGTGCATGGTTTCTCTTGCAACACGCACAGAACACTCATGGATTAAGAATCTACTTAGAAAGCGAACACGGAAGTCCCCTGACCCCGCGGGTTCTTCACACACCCCCATTCGGCGTAGTACCCAGAGAGCTCAAGATGTGTGGCAGTTTTCGGATGGAAGCTCGAGAGCCCTTAAGTTCT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG027858]] | + | [[Category:Sense]][[Category:NONHSAG027858]][[Category:Transcripts]] |
Revision as of 09:53, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT070900 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
562 nt |
| Genomic location |
chr2-:60679712..60755670 |
| Exon number |
5 |
| Exons |
60679712..60679801,60689417..60689559,60695867..60695968,60754790..60754929,60755584..60755670 |
| Genome context |
|
| Sequence |
000001 TTTTCAATCT TCTGGGAAAG AGAAGAATGT TCCCCTCCAG TTCTGGGCAT ATTGAAGGAG CACGGAGCTG TTGGGAAAAG 000080
000081 TTGCAATGCT AACATAGACC TCCACTGAGA GAATTTCAGA ATCATTTGGT AGTTGAGAAG CGCCTACTTC ATGCGGAGGC 000160 000161 CCCGTGGGAG GAGTGGAAGA GTTGGCCTCA GCACTGGCGA GTATCGGATG GGAGCTCTGC TCACTTGATA AACTTCTGCA 000240 000241 CTGGAGGGGC CTCTCCTCCC CTCGTTCTGC ACATGGAGCT CTAATCCCCA CGCCTGGGAT GAGTGCAGAA TATGCCCCGC 000320 000321 AGGGTATTTG TAAAGATGAG CCCAGCAGCT ACACATGTAC AACTTGCAAA CAGCCATTCA CCAGTGCATG GTTTCTCTTG 000400 000401 CAACACGCAC AGAACACTCA TGGATTAAGA ATCTACTTAG AAAGCGAACA CGGAAGTCCC CTGACCCCGC GGGTTCTTCA 000480 000481 CACACCCCCA TTCGGCGTAG TACCCAGAGA GCTCAAGATG TGTGGCAGTT TTCGGATGGA AGCTCGAGAG CCCTTAAGTT 000560 000561 CT |
Predicted Small Protein
| Name | NONHSAT070900_smProtein_311:427 |
| Length | 39 |
| Molecular weight | 4261.8929 |
| Aromaticity | 0.0526315789474 |
| Instability index | 90.6526315789 |
| Isoelectric point | 10.7631225586 |
| Runs | 5 |
| Runs residual | 0.0410318559557 |
| Runs probability | 0.0369722663841 |
| Amino acid sequence | MPRRVFVKMSPAATHVQLANSHSPVHGFSCNTHRTLMD |
| Secondary structure | LLLEEEEELLLHHHHHHHHLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
