Difference between revisions of "NONHSAT106743"
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sequence = <dnaseq>TTAAAGGACTATGACAATAGCTTGCTGCCTGGAAGGGACACAGAGATGTCACTCAAGTGGATGTTGAGACTACCATGGCCGCCCTTGAGAGGAGCTTCTGTCATGTTTTTGGATATCCCGGAACCTCACTCTGCCCAAGGAACATCCTTCACTGCCTTAGCAGTATAACAGTGGGTGCGTACTCACGAAATAGGATAGACTTTCCACGCGCGCTGTCACCTGCAGGCCAGCGGGGCTGCTGAATGATGGAACCATTGCCCACAACGAAACCGAAGACAGGACATCAAGATGGCCTGCTAGCGGGGTGACACCATCTGACTAGGGTATTATGGACCCTAAACTCTGTACTCCCGCACAAGGGAAGTGCCAAGACCAGCTCAGTCAGGGAGACCCTAACCCAGCGGCGCTAGAGGGAAGCGTGACACTGCAGGGCACATTGAGAGACACTGGGCTTGTAAGGGTGACGGTGATGGGGGGGCGGCAGGCAGCCACCTGATTAGGCTGCACCTGTGAAATCCCAATCTCAACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGCCTTGGGTGAGATCAGGCCAGGGCTGAACCTGTGAGATTCAAATTGGGGCTTCGTTGTTTGTGTACATTCTTGTGAAGTCATTTCTGGGACTTCGTCCCTCCCCACCTTGCTTGCTGTTGGAGCATAACTTACAATATTGTTTCGTTTTTTTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAAGCTCTGCCTCCTGGGGTAACTTCATGCAGAGTAAAGAAATACCACACCCAGGACTTTGCAGGTTGCTCAAGCAGATGGCCACATGGACCCTGGCTTCCTCAGAGCCTACTGTGACTAGAGCACAACCAGTACAAGTGACAAGAGACCCCTGAGGGCTCAGCGCAGGCTTTGAGAGGAAAGCGATGCTTGAACTGGGGTGGGGAGAATGAGTCATGGCAATACCCAGCATGTATGGACTGTGTGCCGGACATGACTTTGGTCACGGGGTGAGGTGGCTCAGATAGGATTTGAACCCGAGCAGACAGACTCCTGGACCCACGCACCTCACCAAGTGTGGTTGGCTAGCGAGCCGAAAGAACCCTGGAGGCAGGGTGCTGAAGGAGGGGAGAGTGGTGTGAGGCTCATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCATGGTGGCAGGTGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAACTGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTCACTAAAATGTTTACAGTGGTTATCACTGAGAAAAAATATTAAATGTTAAAGTTGATTTTTACTATCTTTTATCTGCTTTTTTTTTTTTTTGCATCTGCTCCTGTACCTATGTGCAATGATCATGTATTACTTTTGCAATCAGACAAATACATAAGCTCTACTTTAAAACTGTTTATTTATCTACCAGGTTAACGACAAATACTGAAACTCAGTCTTGGCCTGAACCTGGTG</dnaseq>| | sequence = <dnaseq>TTAAAGGACTATGACAATAGCTTGCTGCCTGGAAGGGACACAGAGATGTCACTCAAGTGGATGTTGAGACTACCATGGCCGCCCTTGAGAGGAGCTTCTGTCATGTTTTTGGATATCCCGGAACCTCACTCTGCCCAAGGAACATCCTTCACTGCCTTAGCAGTATAACAGTGGGTGCGTACTCACGAAATAGGATAGACTTTCCACGCGCGCTGTCACCTGCAGGCCAGCGGGGCTGCTGAATGATGGAACCATTGCCCACAACGAAACCGAAGACAGGACATCAAGATGGCCTGCTAGCGGGGTGACACCATCTGACTAGGGTATTATGGACCCTAAACTCTGTACTCCCGCACAAGGGAAGTGCCAAGACCAGCTCAGTCAGGGAGACCCTAACCCAGCGGCGCTAGAGGGAAGCGTGACACTGCAGGGCACATTGAGAGACACTGGGCTTGTAAGGGTGACGGTGATGGGGGGGCGGCAGGCAGCCACCTGATTAGGCTGCACCTGTGAAATCCCAATCTCAACTATGCAGCCATAAAAAATGATGAGTTCATGTCCTTTGTAGGGACATGGATGAAATTGGAAACCATCATTCTCAGTAAACTATCGCAAGAACAAAAAACCAAACACCGCATATTCTCACTCATAGGTGGGAATTGAACAATGAGATCACATGGACACAGGAAGGGGAATATCACACTCTGGGGACTGTGGTGGGGTCGGGGGAGGGGGGAGGGATAGCATTGGGAGATATACCTAATGCTAGATGACACGTTAGTGGGTGCAGCGCACCAGCATGGCACATGTATACATATGTAACTAACCTGCACAATGTGCACATGTACCCTAAAACTTAGAGTATAATAAGGAGGAAGAGGAGGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGATCTGCCTTGGGTGAGATCAGGCCAGGGCTGAACCTGTGAGATTCAAATTGGGGCTTCGTTGTTTGTGTACATTCTTGTGAAGTCATTTCTGGGACTTCGTCCCTCCCCACCTTGCTTGCTGTTGGAGCATAACTTACAATATTGTTTCGTTTTTTTTTTTTTTTTTAGACGGAGTCTTGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGCAGTCTTGGCTCACTGCAAGCTCTGCCTCCTGGGGTAACTTCATGCAGAGTAAAGAAATACCACACCCAGGACTTTGCAGGTTGCTCAAGCAGATGGCCACATGGACCCTGGCTTCCTCAGAGCCTACTGTGACTAGAGCACAACCAGTACAAGTGACAAGAGACCCCTGAGGGCTCAGCGCAGGCTTTGAGAGGAAAGCGATGCTTGAACTGGGGTGGGGAGAATGAGTCATGGCAATACCCAGCATGTATGGACTGTGTGCCGGACATGACTTTGGTCACGGGGTGAGGTGGCTCAGATAGGATTTGAACCCGAGCAGACAGACTCCTGGACCCACGCACCTCACCAAGTGTGGTTGGCTAGCGAGCCGAAAGAACCCTGGAGGCAGGGTGCTGAAGGAGGGGAGAGTGGTGTGAGGCTCATGGTGAAACCCTGTCTCTACTAAAAATACAAAAATGAGCTGGGCATGGTGGCAGGTGCCTGTAATTCCAGCTACTCGGGAGGCTGAGGCAGGAGAACTGCTTGAATCTGGGAGGCAGAGGTTGCAGTGAGCCGAGATTGCACCACTCACTAAAATGTTTACAGTGGTTATCACTGAGAAAAAATATTAAATGTTAAAGTTGATTTTTACTATCTTTTATCTGCTTTTTTTTTTTTTTGCATCTGCTCCTGTACCTATGTGCAATGATCATGTATTACTTTTGCAATCAGACAAATACATAAGCTCTACTTTAAAACTGTTTATTTATCTACCAGGTTAACGACAAATACTGAAACTCAGTCTTGGCCTGAACCTGGTG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG056031]] | + | [[Category:Intergenic]][[Category:NONHSAG056031]][[Category:Transcripts]] |
Revision as of 10:02, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT106743 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1939 nt |
Genomic location |
chr6-:2791677..2803927 |
Exon number |
9 |
Exons |
2791677..2791908,2792236..2792383,2792510..2792654,2792753..2792862,2794237..2794368,2796824..2796942,2797957..2798140,2801775..2802117,2803402..2803927 |
Genome context |
|
Sequence |
000001 TTAAAGGACT ATGACAATAG CTTGCTGCCT GGAAGGGACA CAGAGATGTC ACTCAAGTGG ATGTTGAGAC TACCATGGCC 000080
000081 GCCCTTGAGA GGAGCTTCTG TCATGTTTTT GGATATCCCG GAACCTCACT CTGCCCAAGG AACATCCTTC ACTGCCTTAG 000160 000161 CAGTATAACA GTGGGTGCGT ACTCACGAAA TAGGATAGAC TTTCCACGCG CGCTGTCACC TGCAGGCCAG CGGGGCTGCT 000240 000241 GAATGATGGA ACCATTGCCC ACAACGAAAC CGAAGACAGG ACATCAAGAT GGCCTGCTAG CGGGGTGACA CCATCTGACT 000320 000321 AGGGTATTAT GGACCCTAAA CTCTGTACTC CCGCACAAGG GAAGTGCCAA GACCAGCTCA GTCAGGGAGA CCCTAACCCA 000400 000401 GCGGCGCTAG AGGGAAGCGT GACACTGCAG GGCACATTGA GAGACACTGG GCTTGTAAGG GTGACGGTGA TGGGGGGGCG 000480 000481 GCAGGCAGCC ACCTGATTAG GCTGCACCTG TGAAATCCCA ATCTCAACTA TGCAGCCATA AAAAATGATG AGTTCATGTC 000560 000561 CTTTGTAGGG ACATGGATGA AATTGGAAAC CATCATTCTC AGTAAACTAT CGCAAGAACA AAAAACCAAA CACCGCATAT 000640 000641 TCTCACTCAT AGGTGGGAAT TGAACAATGA GATCACATGG ACACAGGAAG GGGAATATCA CACTCTGGGG ACTGTGGTGG 000720 000721 GGTCGGGGGA GGGGGGAGGG ATAGCATTGG GAGATATACC TAATGCTAGA TGACACGTTA GTGGGTGCAG CGCACCAGCA 000800 000801 TGGCACATGT ATACATATGT AACTAACCTG CACAATGTGC ACATGTACCC TAAAACTTAG AGTATAATAA GGAGGAAGAG 000880 000881 GAGGAGGAGG AGGAGGAAGA GGAGGAGGAG GAGGAGGAGG AGGAGGAGAT CTGCCTTGGG TGAGATCAGG CCAGGGCTGA 000960 000961 ACCTGTGAGA TTCAAATTGG GGCTTCGTTG TTTGTGTACA TTCTTGTGAA GTCATTTCTG GGACTTCGTC CCTCCCCACC 001040 001041 TTGCTTGCTG TTGGAGCATA ACTTACAATA TTGTTTCGTT TTTTTTTTTT TTTTTAGACG GAGTCTTGCT CTGTCGCCCA 001120 001121 GGCTGGAGTG CAGTGGTGCA GTCTTGGCTC ACTGCAAGCT CTGCCTCCTG GGGTAACTTC ATGCAGAGTA AAGAAATACC 001200 001201 ACACCCAGGA CTTTGCAGGT TGCTCAAGCA GATGGCCACA TGGACCCTGG CTTCCTCAGA GCCTACTGTG ACTAGAGCAC 001280 001281 AACCAGTACA AGTGACAAGA GACCCCTGAG GGCTCAGCGC AGGCTTTGAG AGGAAAGCGA TGCTTGAACT GGGGTGGGGA 001360 001361 GAATGAGTCA TGGCAATACC CAGCATGTAT GGACTGTGTG CCGGACATGA CTTTGGTCAC GGGGTGAGGT GGCTCAGATA 001440 001441 GGATTTGAAC CCGAGCAGAC AGACTCCTGG ACCCACGCAC CTCACCAAGT GTGGTTGGCT AGCGAGCCGA AAGAACCCTG 001520 001521 GAGGCAGGGT GCTGAAGGAG GGGAGAGTGG TGTGAGGCTC ATGGTGAAAC CCTGTCTCTA CTAAAAATAC AAAAATGAGC 001600 001601 TGGGCATGGT GGCAGGTGCC TGTAATTCCA GCTACTCGGG AGGCTGAGGC AGGAGAACTG CTTGAATCTG GGAGGCAGAG 001680 001681 GTTGCAGTGA GCCGAGATTG CACCACTCAC TAAAATGTTT ACAGTGGTTA TCACTGAGAA AAAATATTAA ATGTTAAAGT 001760 001761 TGATTTTTAC TATCTTTTAT CTGCTTTTTT TTTTTTTTGC ATCTGCTCCT GTACCTATGT GCAATGATCA TGTATTACTT 001840 001841 TTGCAATCAG ACAAATACAT AAGCTCTACT TTAAAACTGT TTATTTATCT ACCAGGTTAA CGACAAATAC TGAAACTCAG 001920 001921 TCTTGGCCTG AACCTGGTG |
Predicted Small Protein
Name | NONHSAT106743_smProtein_74:241 |
Length | 56 |
Molecular weight | 5998.8805 |
Aromaticity | 0.0909090909091 |
Instability index | 61.3690909091 |
Isoelectric point | 9.29876708984 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0308445700603 |
Amino acid sequence | MAALERSFCHVFGYPGTSLCPRNILHCLSSITVGAYSRNRIDFPRALSPAGQRGC |
Secondary structure | LHHHHLLEEEEELLLLLLLLLLLLEEEELLEEEEEEEELLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |