Difference between revisions of "NONHSAT007033"

From LncRNAWiki
Jump to: navigation, search
Line 42: Line 42:
 
sequence = <dnaseq>CTGATGTAACAGCCTTGGGAAAGAGGTTGCAGTGAAAAGCTGGTCCTGCTGTGGTGGAGAGAATGGAGGAAAGATAATAAAAGGCCAAACCTTTGCTCCAACTTTCTCCTTAGCTTCCCTTTGGATCTGGAAAGCTGGGGACCCACACGGCAGAGCCATGGTACTGGAGGAGCCATTAACAAAGCTTTCAATAAACCTCTCTTTCTTGAAGTTACCTGAGAATGGATCCATTCCCTGCAACTGAAGATTCTAAGGAACTGGGTTTCTCAGTATACAATGGGAATGGTTGGGAGGAGGTAAAGAGTAGAAGACAGTATCAAGAATCCAGAGCCCAGCACCTGTAGTCCTAACTATTCAGATTCCTTGAGCCCAGGAGTTTGAGTCCAGCCTGGACAACATATTGAGACCCCCATCTCTCTAAAAAAAAAGAGAAAGAAAGAAGGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAGGAAAGAAGGAAAGAAGGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAAGAAGATTGTAGCTAGGGGGAGAGTAGGTGAAAAGATGAACAACATGACCGGGAAGATTTCCTAATCTCACCACAGCCTGGCTCTACCTTAAGTCTTTAATAAAAGCTTGACTGAAGGTACCAAGGTGTGCTGAAGTGGAAGCAAAGTTCTCCAAAGTCCAGCATGGTAGACATCAGTGGTGGTAACCAAGGACAGACCCCAAGGCAAGGTGAACCTCAAAAATGGAACCTCAAGTCTATGCAGTCCAGCTGCCCTCCCCACCAGAAAGTCCTTGTTCCAGCCCAACATCAGTGCCTCTGAGTTTGTTTACTAGAAACAAAGGAAGAATTTCCTTGTAAAAATATAGACAGAGTAGTCCCTGGCTTTCTCCTCTTGCAGGAAGGATGGATTCTCCCATTCCATACCATCTTTCCCCCACACTGGCCCCAGAAATACTTAATTCAACTATGTGAAAATAAAGATTGTTTTTGGTTTGAGGGCATAGGGATCCATTTATCCTTATTCTTTATGAGGCACTAAATTAGCTTTGTATGTTATTAAATGTGTCTCGTCAATGCTGTTGGCATTGTTTCATTTTAA</dnaseq>|
 
sequence = <dnaseq>CTGATGTAACAGCCTTGGGAAAGAGGTTGCAGTGAAAAGCTGGTCCTGCTGTGGTGGAGAGAATGGAGGAAAGATAATAAAAGGCCAAACCTTTGCTCCAACTTTCTCCTTAGCTTCCCTTTGGATCTGGAAAGCTGGGGACCCACACGGCAGAGCCATGGTACTGGAGGAGCCATTAACAAAGCTTTCAATAAACCTCTCTTTCTTGAAGTTACCTGAGAATGGATCCATTCCCTGCAACTGAAGATTCTAAGGAACTGGGTTTCTCAGTATACAATGGGAATGGTTGGGAGGAGGTAAAGAGTAGAAGACAGTATCAAGAATCCAGAGCCCAGCACCTGTAGTCCTAACTATTCAGATTCCTTGAGCCCAGGAGTTTGAGTCCAGCCTGGACAACATATTGAGACCCCCATCTCTCTAAAAAAAAAGAGAAAGAAAGAAGGAAAGAAAAAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAGAAAGAAAGAAGGAAAGAAGGAAAGAAGGAAAGAAAGAAAGAAAGAGAAAGAAAGAAAAGAAGATTGTAGCTAGGGGGAGAGTAGGTGAAAAGATGAACAACATGACCGGGAAGATTTCCTAATCTCACCACAGCCTGGCTCTACCTTAAGTCTTTAATAAAAGCTTGACTGAAGGTACCAAGGTGTGCTGAAGTGGAAGCAAAGTTCTCCAAAGTCCAGCATGGTAGACATCAGTGGTGGTAACCAAGGACAGACCCCAAGGCAAGGTGAACCTCAAAAATGGAACCTCAAGTCTATGCAGTCCAGCTGCCCTCCCCACCAGAAAGTCCTTGTTCCAGCCCAACATCAGTGCCTCTGAGTTTGTTTACTAGAAACAAAGGAAGAATTTCCTTGTAAAAATATAGACAGAGTAGTCCCTGGCTTTCTCCTCTTGCAGGAAGGATGGATTCTCCCATTCCATACCATCTTTCCCCCACACTGGCCCCAGAAATACTTAATTCAACTATGTGAAAATAAAGATTGTTTTTGGTTTGAGGGCATAGGGATCCATTTATCCTTATTCTTTATGAGGCACTAAATTAGCTTTGTATGTTATTAAATGTGTCTCGTCAATGCTGTTGGCATTGTTTCATTTTAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG003198]]
+
[[Category:Intergenic]][[Category:NONHSAG003198]][[Category:Transcripts]]

Revision as of 10:03, 16 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT007033

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1138 nt

Genomic location

chr1+:159931014..159948876

Exon number

3

Exons

159931014..159931195,159946434..159946902,159948390..159948876

Genome context

Sequence
000001 CTGATGTAAC AGCCTTGGGA AAGAGGTTGC AGTGAAAAGC TGGTCCTGCT GTGGTGGAGA GAATGGAGGA AAGATAATAA 000080
000081 AAGGCCAAAC CTTTGCTCCA ACTTTCTCCT TAGCTTCCCT TTGGATCTGG AAAGCTGGGG ACCCACACGG CAGAGCCATG 000160
000161 GTACTGGAGG AGCCATTAAC AAAGCTTTCA ATAAACCTCT CTTTCTTGAA GTTACCTGAG AATGGATCCA TTCCCTGCAA 000240
000241 CTGAAGATTC TAAGGAACTG GGTTTCTCAG TATACAATGG GAATGGTTGG GAGGAGGTAA AGAGTAGAAG ACAGTATCAA 000320
000321 GAATCCAGAG CCCAGCACCT GTAGTCCTAA CTATTCAGAT TCCTTGAGCC CAGGAGTTTG AGTCCAGCCT GGACAACATA 000400
000401 TTGAGACCCC CATCTCTCTA AAAAAAAAGA GAAAGAAAGA AGGAAAGAAA AAAAGAAAGA AAGAAAGAAA GAAAGAAAGA 000480
000481 AAGAAAGAAA GAAAGAAAGA GAAAGAAAGA AGGAAAGAAG GAAAGAAGGA AAGAAAGAAA GAAAGAGAAA GAAAGAAAAG 000560
000561 AAGATTGTAG CTAGGGGGAG AGTAGGTGAA AAGATGAACA ACATGACCGG GAAGATTTCC TAATCTCACC ACAGCCTGGC 000640
000641 TCTACCTTAA GTCTTTAATA AAAGCTTGAC TGAAGGTACC AAGGTGTGCT GAAGTGGAAG CAAAGTTCTC CAAAGTCCAG 000720
000721 CATGGTAGAC ATCAGTGGTG GTAACCAAGG ACAGACCCCA AGGCAAGGTG AACCTCAAAA ATGGAACCTC AAGTCTATGC 000800
000801 AGTCCAGCTG CCCTCCCCAC CAGAAAGTCC TTGTTCCAGC CCAACATCAG TGCCTCTGAG TTTGTTTACT AGAAACAAAG 000880
000881 GAAGAATTTC CTTGTAAAAA TATAGACAGA GTAGTCCCTG GCTTTCTCCT CTTGCAGGAA GGATGGATTC TCCCATTCCA 000960
000961 TACCATCTTT CCCCCACACT GGCCCCAGAA ATACTTAATT CAACTATGTG AAAATAAAGA TTGTTTTTGG TTTGAGGGCA 001040
001041 TAGGGATCCA TTTATCCTTA TTCTTTATGA GGCACTAAAT TAGCTTTGTA TGTTATTAAA TGTGTCTCGT CAATGCTGTT 001120
001121 GGCATTGTTT CATTTTAA
[back to top]

Predicted Small Protein

Name NONHSAT007033_smProtein_221:343
Length 41
Molecular weight 4688.0242
Aromaticity 0.125
Instability index 74.1425
Isoelectric point 5.09027099609
Runs 7
Runs residual 0.00302419354839
Runs probability 0.0493729023141
Amino acid sequence MDPFPATEDSKELGFSVYNGNGWEEVKSRRQYQESRAQHL
Secondary structure LLLLLLLLLLLLLLEEEELLLLLEEEELHHHHHHHHHLLL
PRMN -
PiMo -