Difference between revisions of "NONHSAT032071"
| Line 42: | Line 42: | ||
sequence = <dnaseq>ATGTTTTATGGGAAGGAGGAGGGAAGCGGCTGAGCAGGGCAAGAGCGAAAGTCCACTGCCTGGCAAGGACAGCCTAGACACGGGGGAAAGAAGGGACATGGAGGGGCTGAGCCCTGTCACACGTCATGCCCTGCATGCCGGGCTGGACATGGAGAAGCTGAGCGTGCAGTCTGGAGCTGAGGCTGGGAAGCCCTGATACATGGCTTAGAAGTGAGTTGGTGACAACTGGACGGTTCCCCAGCAGGGGCAAGCACCAGAGTGATGGGAACAGCCCCTGCTGCCAGGAGCCCACGGGGGGAGTGTGCACGTGTGTGCGTGTGTGTGGTGTATCCTGTGTGCACGTGGTATGTTCATAGATGTGTAGTGTCTGTGCATGTGTGCGTGTGTGTGGGGTATGTTCTTGTGTGTGGCATATGTTCATGTGTGCGTGTGTGTGGTGTCTGCTTATGTGTGCATGTGTGTGTGGTGCTGTAGCTTCTAATTCAGCCCAAGCCACAACTTAGACTTTTAATGTTACGTTCAAACAAAACCATTTGGAGACTCACCCACAGCTCTGAGGCTTTGGACGACGCCCGCTCATCACCTGCCTTCCCCTCTGCTGAGTGCAATGAATTCAAGCTCCATAAAGGCCACACATGGAGCCCTGTGTGCGTCTACAGTTCTGGGTCCCGAGATGAGGCGGTGAAACAGCAAACCCACACCCAGAACCCCTGCCCCAGGAGCCCCAGCCAGCAGGAGAGCAGGGCAGGGGTGCAAAGAGCAAGCCGGGGGTGGGGGTGGGAGAGGCAGAGCAGCAGGCTGGAGGCCGGGGCTCTGGTGGGATTTTACGTTGAGCACGGGGTGAGCCTCTTGAAGGGTGAGGGCGTGTGTGGCCATCCAGGTGGGGGTGGGGAGCGCAAAGGCCCTGGGGCAGGAGCAGGCCTGGAGCGCAGGCCACAGAGCCAGGGGCCGGGCGCAGGTGAGTGAGCCAAAGGGAACCAAGAGGGGATGGTGGAGGGAGCGGCCTGGCTGAGCAACCCGGGGCTTTGACCTTCTCAGGGGCAATGGGAAGCCTGGAATTGCATGGGCTGGTGTGGAGGTCACCGTGACCTTGCCAGGCCTGGGGGTGCAGCCGCAGTGCCCAGGGAGGTGAGAAGGGGCTGGCCAGGCTGCCTGTTGTGAAGAGCGGAGAAGTATGAGAGAGATGTGGAGCAGGGCGTCTGGCTTTTCTCTGACCTGCGATGGGCTGGTGGGAGCAGGAGCGAGCTGGCCTCACTGTGAATGTGAAAATGCTGGTTGGAGCACACCACGGTGGGTACTTCCTTCAACGGCTAAATGCGCCGAAGGCCTCCAAGCTTGACAGGGTTGAATTTCCTCCAAGGCCCTGGGAGGGGCGCCCTGTGCTCCCTGGATGGGGCCGACATTCCTGGCCTGTCCCCAGCTGCGTCGCCTCTGCCCAGCCCTCAATCACTGCAGCTCTCAAGTGGTCCTGGGTGCCGTGATCTTGCTGAACTCTGATGCTTTCCAAATACCATAAACTTAGTTTATTTTCTGTCTGACAGAAACGGCGCCACTTAAGTCCTGCAAAGAACCCTCGGGTTCCACTCAGGCTGAGTTATTCGGGGGCCACTGCTGAACGGTTTGCATTTGTTTCCTCTGTGACATCGGAGTGGGGAGGACGCTGCCTCCAGCACAGGGCCAGGGGCCAGGGCTGCTCACACAGAGCTGCTGGAGCCTACAGGGTCCCGGCTGTGGGTCCTGGGCTGCCCGCCCCCAGGAAGGGCACCTTGCCACCATTGAAGTGGGGCGAGCTGATTCGGGCACAGCTGGAAACCAGGAGGCAGCCAGCAGCAGCGGCCCTGAGCAAGAACAGGAACCCCAGGCCGAGGCGGGCGCATCACACGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTGAAAATACAAAAATTAGCCGGGCATGGTGGCACCCACCTGTAATCTCAGCTACTCGGGAGGGTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGCGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCGGCCTGGGCAACAGAGTAGGACTCTGTCTCAAAAATAAAGAAGAAAGAAAGAAGGAGAGTCCGGAAGCCACTGCTGCCCCCACCAGCAGAGTGGAACTGTGATTTCATAGAACAGACACAGCCTGGCAGCGAGAATGACCACAGTGCTCACAGCCACTCAGGTGGAATCTCAGGAACTCAATGTCAGGAGGAGGAGTGGGGCCCTAAGGCCCGTGTGCGGGAGACAGTGGCCATGGCGTCGAGCTCAAAGGTGAGCCGGGTGTGGCTGGGGATGGGAAGGCGTGGCGCAGAGCCACGGGGAAGGCACACGAGGTCCAGAGACGGCAGCCTGCGAAGTGGAGGGAGGGTGGACGCCGGGGTGATCACCCACTTTCCTAGACTGAGCGTTGGGCACAGGCTTTGTATTGCTTCATTCATCGTCATATTTGATGTATGTTTGATAAATATCCCTTTAAAAATTAAAGACAGTTTGTTAATT</dnaseq>| | sequence = <dnaseq>ATGTTTTATGGGAAGGAGGAGGGAAGCGGCTGAGCAGGGCAAGAGCGAAAGTCCACTGCCTGGCAAGGACAGCCTAGACACGGGGGAAAGAAGGGACATGGAGGGGCTGAGCCCTGTCACACGTCATGCCCTGCATGCCGGGCTGGACATGGAGAAGCTGAGCGTGCAGTCTGGAGCTGAGGCTGGGAAGCCCTGATACATGGCTTAGAAGTGAGTTGGTGACAACTGGACGGTTCCCCAGCAGGGGCAAGCACCAGAGTGATGGGAACAGCCCCTGCTGCCAGGAGCCCACGGGGGGAGTGTGCACGTGTGTGCGTGTGTGTGGTGTATCCTGTGTGCACGTGGTATGTTCATAGATGTGTAGTGTCTGTGCATGTGTGCGTGTGTGTGGGGTATGTTCTTGTGTGTGGCATATGTTCATGTGTGCGTGTGTGTGGTGTCTGCTTATGTGTGCATGTGTGTGTGGTGCTGTAGCTTCTAATTCAGCCCAAGCCACAACTTAGACTTTTAATGTTACGTTCAAACAAAACCATTTGGAGACTCACCCACAGCTCTGAGGCTTTGGACGACGCCCGCTCATCACCTGCCTTCCCCTCTGCTGAGTGCAATGAATTCAAGCTCCATAAAGGCCACACATGGAGCCCTGTGTGCGTCTACAGTTCTGGGTCCCGAGATGAGGCGGTGAAACAGCAAACCCACACCCAGAACCCCTGCCCCAGGAGCCCCAGCCAGCAGGAGAGCAGGGCAGGGGTGCAAAGAGCAAGCCGGGGGTGGGGGTGGGAGAGGCAGAGCAGCAGGCTGGAGGCCGGGGCTCTGGTGGGATTTTACGTTGAGCACGGGGTGAGCCTCTTGAAGGGTGAGGGCGTGTGTGGCCATCCAGGTGGGGGTGGGGAGCGCAAAGGCCCTGGGGCAGGAGCAGGCCTGGAGCGCAGGCCACAGAGCCAGGGGCCGGGCGCAGGTGAGTGAGCCAAAGGGAACCAAGAGGGGATGGTGGAGGGAGCGGCCTGGCTGAGCAACCCGGGGCTTTGACCTTCTCAGGGGCAATGGGAAGCCTGGAATTGCATGGGCTGGTGTGGAGGTCACCGTGACCTTGCCAGGCCTGGGGGTGCAGCCGCAGTGCCCAGGGAGGTGAGAAGGGGCTGGCCAGGCTGCCTGTTGTGAAGAGCGGAGAAGTATGAGAGAGATGTGGAGCAGGGCGTCTGGCTTTTCTCTGACCTGCGATGGGCTGGTGGGAGCAGGAGCGAGCTGGCCTCACTGTGAATGTGAAAATGCTGGTTGGAGCACACCACGGTGGGTACTTCCTTCAACGGCTAAATGCGCCGAAGGCCTCCAAGCTTGACAGGGTTGAATTTCCTCCAAGGCCCTGGGAGGGGCGCCCTGTGCTCCCTGGATGGGGCCGACATTCCTGGCCTGTCCCCAGCTGCGTCGCCTCTGCCCAGCCCTCAATCACTGCAGCTCTCAAGTGGTCCTGGGTGCCGTGATCTTGCTGAACTCTGATGCTTTCCAAATACCATAAACTTAGTTTATTTTCTGTCTGACAGAAACGGCGCCACTTAAGTCCTGCAAAGAACCCTCGGGTTCCACTCAGGCTGAGTTATTCGGGGGCCACTGCTGAACGGTTTGCATTTGTTTCCTCTGTGACATCGGAGTGGGGAGGACGCTGCCTCCAGCACAGGGCCAGGGGCCAGGGCTGCTCACACAGAGCTGCTGGAGCCTACAGGGTCCCGGCTGTGGGTCCTGGGCTGCCCGCCCCCAGGAAGGGCACCTTGCCACCATTGAAGTGGGGCGAGCTGATTCGGGCACAGCTGGAAACCAGGAGGCAGCCAGCAGCAGCGGCCCTGAGCAAGAACAGGAACCCCAGGCCGAGGCGGGCGCATCACACGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTGAAAATACAAAAATTAGCCGGGCATGGTGGCACCCACCTGTAATCTCAGCTACTCGGGAGGGTGAGGCAGGAGAATTGCTTGAACCCGGGAGGTGGCGGTTGCAGTGAGCCGAGATTGTGCCACTGCACTCCGGCCTGGGCAACAGAGTAGGACTCTGTCTCAAAAATAAAGAAGAAAGAAAGAAGGAGAGTCCGGAAGCCACTGCTGCCCCCACCAGCAGAGTGGAACTGTGATTTCATAGAACAGACACAGCCTGGCAGCGAGAATGACCACAGTGCTCACAGCCACTCAGGTGGAATCTCAGGAACTCAATGTCAGGAGGAGGAGTGGGGCCCTAAGGCCCGTGTGCGGGAGACAGTGGCCATGGCGTCGAGCTCAAAGGTGAGCCGGGTGTGGCTGGGGATGGGAAGGCGTGGCGCAGAGCCACGGGGAAGGCACACGAGGTCCAGAGACGGCAGCCTGCGAAGTGGAGGGAGGGTGGACGCCGGGGTGATCACCCACTTTCCTAGACTGAGCGTTGGGCACAGGCTTTGTATTGCTTCATTCATCGTCATATTTGATGTATGTTTGATAAATATCCCTTTAAAAATTAAAGACAGTTTGTTAATT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]][[Category:NONHSAG012801]] | + | [[Category:Intronic(S)]][[Category:NONHSAG012801]][[Category:Transcripts]] |
Revision as of 10:20, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT032071 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
2532 nt |
| Genomic location |
chr12-:132849279..132851810 |
| Exon number |
1 |
| Exons |
132849279..132851810 |
| Genome context |
|
| Sequence |
000001 ATGTTTTATG GGAAGGAGGA GGGAAGCGGC TGAGCAGGGC AAGAGCGAAA GTCCACTGCC TGGCAAGGAC AGCCTAGACA 000080
000081 CGGGGGAAAG AAGGGACATG GAGGGGCTGA GCCCTGTCAC ACGTCATGCC CTGCATGCCG GGCTGGACAT GGAGAAGCTG 000160 000161 AGCGTGCAGT CTGGAGCTGA GGCTGGGAAG CCCTGATACA TGGCTTAGAA GTGAGTTGGT GACAACTGGA CGGTTCCCCA 000240 000241 GCAGGGGCAA GCACCAGAGT GATGGGAACA GCCCCTGCTG CCAGGAGCCC ACGGGGGGAG TGTGCACGTG TGTGCGTGTG 000320 000321 TGTGGTGTAT CCTGTGTGCA CGTGGTATGT TCATAGATGT GTAGTGTCTG TGCATGTGTG CGTGTGTGTG GGGTATGTTC 000400 000401 TTGTGTGTGG CATATGTTCA TGTGTGCGTG TGTGTGGTGT CTGCTTATGT GTGCATGTGT GTGTGGTGCT GTAGCTTCTA 000480 000481 ATTCAGCCCA AGCCACAACT TAGACTTTTA ATGTTACGTT CAAACAAAAC CATTTGGAGA CTCACCCACA GCTCTGAGGC 000560 000561 TTTGGACGAC GCCCGCTCAT CACCTGCCTT CCCCTCTGCT GAGTGCAATG AATTCAAGCT CCATAAAGGC CACACATGGA 000640 000641 GCCCTGTGTG CGTCTACAGT TCTGGGTCCC GAGATGAGGC GGTGAAACAG CAAACCCACA CCCAGAACCC CTGCCCCAGG 000720 000721 AGCCCCAGCC AGCAGGAGAG CAGGGCAGGG GTGCAAAGAG CAAGCCGGGG GTGGGGGTGG GAGAGGCAGA GCAGCAGGCT 000800 000801 GGAGGCCGGG GCTCTGGTGG GATTTTACGT TGAGCACGGG GTGAGCCTCT TGAAGGGTGA GGGCGTGTGT GGCCATCCAG 000880 000881 GTGGGGGTGG GGAGCGCAAA GGCCCTGGGG CAGGAGCAGG CCTGGAGCGC AGGCCACAGA GCCAGGGGCC GGGCGCAGGT 000960 000961 GAGTGAGCCA AAGGGAACCA AGAGGGGATG GTGGAGGGAG CGGCCTGGCT GAGCAACCCG GGGCTTTGAC CTTCTCAGGG 001040 001041 GCAATGGGAA GCCTGGAATT GCATGGGCTG GTGTGGAGGT CACCGTGACC TTGCCAGGCC TGGGGGTGCA GCCGCAGTGC 001120 001121 CCAGGGAGGT GAGAAGGGGC TGGCCAGGCT GCCTGTTGTG AAGAGCGGAG AAGTATGAGA GAGATGTGGA GCAGGGCGTC 001200 001201 TGGCTTTTCT CTGACCTGCG ATGGGCTGGT GGGAGCAGGA GCGAGCTGGC CTCACTGTGA ATGTGAAAAT GCTGGTTGGA 001280 001281 GCACACCACG GTGGGTACTT CCTTCAACGG CTAAATGCGC CGAAGGCCTC CAAGCTTGAC AGGGTTGAAT TTCCTCCAAG 001360 001361 GCCCTGGGAG GGGCGCCCTG TGCTCCCTGG ATGGGGCCGA CATTCCTGGC CTGTCCCCAG CTGCGTCGCC TCTGCCCAGC 001440 001441 CCTCAATCAC TGCAGCTCTC AAGTGGTCCT GGGTGCCGTG ATCTTGCTGA ACTCTGATGC TTTCCAAATA CCATAAACTT 001520 001521 AGTTTATTTT CTGTCTGACA GAAACGGCGC CACTTAAGTC CTGCAAAGAA CCCTCGGGTT CCACTCAGGC TGAGTTATTC 001600 001601 GGGGGCCACT GCTGAACGGT TTGCATTTGT TTCCTCTGTG ACATCGGAGT GGGGAGGACG CTGCCTCCAG CACAGGGCCA 001680 001681 GGGGCCAGGG CTGCTCACAC AGAGCTGCTG GAGCCTACAG GGTCCCGGCT GTGGGTCCTG GGCTGCCCGC CCCCAGGAAG 001760 001761 GGCACCTTGC CACCATTGAA GTGGGGCGAG CTGATTCGGG CACAGCTGGA AACCAGGAGG CAGCCAGCAG CAGCGGCCCT 001840 001841 GAGCAAGAAC AGGAACCCCA GGCCGAGGCG GGCGCATCAC ACGAGACCAG CCTGGCCAAC ATGGTGAAAC CCCGTCTCTA 001920 001921 CTGAAAATAC AAAAATTAGC CGGGCATGGT GGCACCCACC TGTAATCTCA GCTACTCGGG AGGGTGAGGC AGGAGAATTG 002000 002001 CTTGAACCCG GGAGGTGGCG GTTGCAGTGA GCCGAGATTG TGCCACTGCA CTCCGGCCTG GGCAACAGAG TAGGACTCTG 002080 002081 TCTCAAAAAT AAAGAAGAAA GAAAGAAGGA GAGTCCGGAA GCCACTGCTG CCCCCACCAG CAGAGTGGAA CTGTGATTTC 002160 002161 ATAGAACAGA CACAGCCTGG CAGCGAGAAT GACCACAGTG CTCACAGCCA CTCAGGTGGA ATCTCAGGAA CTCAATGTCA 002240 002241 GGAGGAGGAG TGGGGCCCTA AGGCCCGTGT GCGGGAGACA GTGGCCATGG CGTCGAGCTC AAAGGTGAGC CGGGTGTGGC 002320 002321 TGGGGATGGG AAGGCGTGGC GCAGAGCCAC GGGGAAGGCA CACGAGGTCC AGAGACGGCA GCCTGCGAAG TGGAGGGAGG 002400 002401 GTGGACGCCG GGGTGATCAC CCACTTTCCT AGACTGAGCG TTGGGCACAG GCTTTGTATT GCTTCATTCA TCGTCATATT 002480 002481 TGATGTATGT TTGATAAATA TCCCTTTAAA AATTAAAGAC AGTTTGTTAA TT |
Predicted Small Protein
| Name | NONHSAT032071_smProtein_1220:1480 |
| Length | 87 |
| Molecular weight | 9669.0638 |
| Aromaticity | 0.116279069767 |
| Instability index | 48.7709302326 |
| Isoelectric point | 10.1679077148 |
| Runs | 12 |
| Runs residual | 8.67754251998e-05 |
| Runs probability | 0.0294412059118 |
| Amino acid sequence | MGWWEQERAGLTVNVKMLVGAHHGGYFLQRLNAPKASKLDRVEFPPRPWEGRPVLPGWGR HSWPVPSCVASAQPSITAALKWSWVP |
| Secondary structure | LLLHHHHLLLLEEEEEEEELLLLLHHHHEELLLLLLLLLLEEELLLLLLLLLLLLLLLLL LLLLLLLLLLLLLHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
