Difference between revisions of "NONHSAT068132"
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sequence = <dnaseq>GTTTCAGGGTGAGCCGGACGCAGGCGTGCCTGCGCAGTGCGCGGAGGAGTGCTGTTCGTGTGTTCGAGTCCCTGGGTTGCTTCCTGGGGTCTGTGGTGCTGGGTGTGCTATCTGCGTGTGATTCTCTAGCGAGAGATTGTGGGCGAGTGACCGAGTGGGCAAGGGGCCGTCACTGTGTGTGCGTGATTTTGACAGTGTGTGGTGGTAGCTTCTGACTCCGCGTGGGTCGTTGAATGTATGACTGGGACCGTTTAGCGGTGGATACACAACTGTGTGCGGCTGTGGAAGATTGCCTCATCCGTTACGTTCCCATTTCCGTGGAACAACAGTTTTACCAGAAGGTTTCGAAGGAACCTTAAAGTTTGGAAGCGTAAGAGTTTATCTGGCGGCTTTGGTGTCATCAAATGTGAGAAGCCCTGGACTTTACACATCCCGAGCCAGTGTGATCCAGTATGATTGGGAGTCCGAGTGCCAGATGCCGGTCAGGACCTGTTATGCTGGGTCTCAGAATGCGGAAACTCTCCCTGTCCGAGGTGGAACAGTTTGTCCTTGAGTGAGGACTGGAGTCCTGAGTGACTCTTTTGATTTGATCCTGTTTCCCTCAAACCTGagatgggagcctcactgtattgcccaggctggtcttgaactccggagctcaagtgatcgtcttgcttcagccttgcaaaatgatggtgaagctgcatcattgtctggggtaaatacctgaggttcgttgtctcacgccaagggaatcaaggacgtggacacacaagaaatggagtccctgtctgaccgggccatgttgtatgttccttgctgtacacgtggttgacaaagaaaagggaagatggagctgcgatgttggacatgcctggcccccaggacatacagccctgccgagcaaataatgaacgtaactcacaaacttcctgcttatcatcaaacgcacgcatccacttatcatcaaacacctcgggtgacagaagaatgcaggtcagctccctgctgccttggcattatcaatcagcccaggaaccatcctataaaatctccagcaagcctttgtttccttgcagtcagctcctcttccactgattctgcctgttgctccctgataacatactttgatactgtctttaataaatctgcctttcttcacccacagctgtcttggtaagttcttttacctctgtgccaccagcccaaacagttgctg</dnaseq>| | sequence = <dnaseq>GTTTCAGGGTGAGCCGGACGCAGGCGTGCCTGCGCAGTGCGCGGAGGAGTGCTGTTCGTGTGTTCGAGTCCCTGGGTTGCTTCCTGGGGTCTGTGGTGCTGGGTGTGCTATCTGCGTGTGATTCTCTAGCGAGAGATTGTGGGCGAGTGACCGAGTGGGCAAGGGGCCGTCACTGTGTGTGCGTGATTTTGACAGTGTGTGGTGGTAGCTTCTGACTCCGCGTGGGTCGTTGAATGTATGACTGGGACCGTTTAGCGGTGGATACACAACTGTGTGCGGCTGTGGAAGATTGCCTCATCCGTTACGTTCCCATTTCCGTGGAACAACAGTTTTACCAGAAGGTTTCGAAGGAACCTTAAAGTTTGGAAGCGTAAGAGTTTATCTGGCGGCTTTGGTGTCATCAAATGTGAGAAGCCCTGGACTTTACACATCCCGAGCCAGTGTGATCCAGTATGATTGGGAGTCCGAGTGCCAGATGCCGGTCAGGACCTGTTATGCTGGGTCTCAGAATGCGGAAACTCTCCCTGTCCGAGGTGGAACAGTTTGTCCTTGAGTGAGGACTGGAGTCCTGAGTGACTCTTTTGATTTGATCCTGTTTCCCTCAAACCTGagatgggagcctcactgtattgcccaggctggtcttgaactccggagctcaagtgatcgtcttgcttcagccttgcaaaatgatggtgaagctgcatcattgtctggggtaaatacctgaggttcgttgtctcacgccaagggaatcaaggacgtggacacacaagaaatggagtccctgtctgaccgggccatgttgtatgttccttgctgtacacgtggttgacaaagaaaagggaagatggagctgcgatgttggacatgcctggcccccaggacatacagccctgccgagcaaataatgaacgtaactcacaaacttcctgcttatcatcaaacgcacgcatccacttatcatcaaacacctcgggtgacagaagaatgcaggtcagctccctgctgccttggcattatcaatcagcccaggaaccatcctataaaatctccagcaagcctttgtttccttgcagtcagctcctcttccactgattctgcctgttgctccctgataacatactttgatactgtctttaataaatctgcctttcttcacccacagctgtcttggtaagttcttttacctctgtgccaccagcccaaacagttgctg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG026628]] | + | [[Category:Intergenic]][[Category:NONHSAG026628]][[Category:Transcripts]] |
Revision as of 10:24, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT068132 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1219 nt |
Genomic location |
chr19+:56905038..56910596 |
Exon number |
5 |
Exons |
56905038..56905422,56905586..56905810,56909250..56909417,56909646..56909752,56910263..56910596 |
Genome context |
|
Sequence |
000001 GTTTCAGGGT GAGCCGGACG CAGGCGTGCC TGCGCAGTGC GCGGAGGAGT GCTGTTCGTG TGTTCGAGTC CCTGGGTTGC 000080
000081 TTCCTGGGGT CTGTGGTGCT GGGTGTGCTA TCTGCGTGTG ATTCTCTAGC GAGAGATTGT GGGCGAGTGA CCGAGTGGGC 000160 000161 AAGGGGCCGT CACTGTGTGT GCGTGATTTT GACAGTGTGT GGTGGTAGCT TCTGACTCCG CGTGGGTCGT TGAATGTATG 000240 000241 ACTGGGACCG TTTAGCGGTG GATACACAAC TGTGTGCGGC TGTGGAAGAT TGCCTCATCC GTTACGTTCC CATTTCCGTG 000320 000321 GAACAACAGT TTTACCAGAA GGTTTCGAAG GAACCTTAAA GTTTGGAAGC GTAAGAGTTT ATCTGGCGGC TTTGGTGTCA 000400 000401 TCAAATGTGA GAAGCCCTGG ACTTTACACA TCCCGAGCCA GTGTGATCCA GTATGATTGG GAGTCCGAGT GCCAGATGCC 000480 000481 GGTCAGGACC TGTTATGCTG GGTCTCAGAA TGCGGAAACT CTCCCTGTCC GAGGTGGAAC AGTTTGTCCT TGAGTGAGGA 000560 000561 CTGGAGTCCT GAGTGACTCT TTTGATTTGA TCCTGTTTCC CTCAAACCTG agatgggagc ctcactgtat tgcccaggct 000640 000641 ggtcttgaac tccggagctc aagtgatcgt cttgcttcag ccttgcaaaa tgatggtgaa gctgcatcat tgtctggggt 000720 000721 aaatacctga ggttcgttgt ctcacgccaa gggaatcaag gacgtggaca cacaagaaat ggagtccctg tctgaccggg 000800 000801 ccatgttgta tgttccttgc tgtacacgtg gttgacaaag aaaagggaag atggagctgc gatgttggac atgcctggcc 000880 000881 cccaggacat acagccctgc cgagcaaata atgaacgtaa ctcacaaact tcctgcttat catcaaacgc acgcatccac 000960 000961 ttatcatcaa acacctcggg tgacagaaga atgcaggtca gctccctgct gccttggcat tatcaatcag cccaggaacc 001040 001041 atcctataaa atctccagca agcctttgtt tccttgcagt cagctcctct tccactgatt ctgcctgttg ctccctgata 001120 001121 acatactttg atactgtctt taataaatct gcctttcttc acccacagct gtcttggtaa gttcttttac ctctgtgcca 001200 001201 ccagcccaaa cagttgctg |
Predicted Small Protein
Name | NONHSAT068132_smProtein_233:358 |
Length | 42 |
Molecular weight | 4851.4904 |
Aromaticity | 0.121951219512 |
Instability index | 40.6856097561 |
Isoelectric point | 4.38543701172 |
Runs | 9 |
Runs residual | 0.0435433188688 |
Runs probability | 0.0323460715617 |
Amino acid sequence | MYDWDRLAVDTQLCAAVEDCLIRYVPISVEQQFYQKVSKEP |
Secondary structure | LLLHHHHHHLHHHHHHHHHHHHLEEELLHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |