Difference between revisions of "NONHSAT053127"
| Line 42: | Line 42: | ||
sequence = <dnaseq>atgcggtgttTCCAGTAAAGGCAGAGAATGTACTCTGTTCTGGCTTTCAGACTTTCCTGGCTTTTCAGTCCAATGTCTTTTCGGTTAGACCAGGGAGATCTTCAGATTCTTCCTTCCCTATCTTTTAGATCCAGCTGCTCTTCGAAGAGGCCAAGGACATGGGATGGGTCATGCTGCACAGTGGTGGCTGTGTCCTTACTGGATCTGACCCGCCATCCTAGCACCCCGGGGAGCCTCGTCTGTGCCCACATGCCACACATCTCAGACCCTGTTTCCTTCTTTCCTGAACTCCAGCAGTTCTCAGACTCACCACCTGCTGTAGTGCCTCCATGACAAACTTGTCACTGATGCGTAAGCATCCCAGAGCCTGCAGGAAGAGGGATGGAGGAAAGAGAAGGAAACTTGGACATCATCCCCAGGAGTTACCATTCTCTGGATACAGCTGGAGTTTGTGCTTGGAATACCATCCCCACAACCACCATCACGTCAAGCAGCTTTTTACTTTCCAGCTTGGCCAACTCCTGGCTGTAACCACCCTCCTCTATCCTTGCCTCTTCTCACCTGTGCTGCATAGAACTGCTCATCCTCTCTGGGAGATTCCAGGCTTTTTGTGAGTTCCTGCCCATCCAAGGCAGCCAGTGGAAAGGAAGACAGAGAAAAATAAAGAATTTCAAACT</dnaseq>| | sequence = <dnaseq>atgcggtgttTCCAGTAAAGGCAGAGAATGTACTCTGTTCTGGCTTTCAGACTTTCCTGGCTTTTCAGTCCAATGTCTTTTCGGTTAGACCAGGGAGATCTTCAGATTCTTCCTTCCCTATCTTTTAGATCCAGCTGCTCTTCGAAGAGGCCAAGGACATGGGATGGGTCATGCTGCACAGTGGTGGCTGTGTCCTTACTGGATCTGACCCGCCATCCTAGCACCCCGGGGAGCCTCGTCTGTGCCCACATGCCACACATCTCAGACCCTGTTTCCTTCTTTCCTGAACTCCAGCAGTTCTCAGACTCACCACCTGCTGTAGTGCCTCCATGACAAACTTGTCACTGATGCGTAAGCATCCCAGAGCCTGCAGGAAGAGGGATGGAGGAAAGAGAAGGAAACTTGGACATCATCCCCAGGAGTTACCATTCTCTGGATACAGCTGGAGTTTGTGCTTGGAATACCATCCCCACAACCACCATCACGTCAAGCAGCTTTTTACTTTCCAGCTTGGCCAACTCCTGGCTGTAACCACCCTCCTCTATCCTTGCCTCTTCTCACCTGTGCTGCATAGAACTGCTCATCCTCTCTGGGAGATTCCAGGCTTTTTGTGAGTTCCTGCCCATCCAAGGCAGCCAGTGGAAAGGAAGACAGAGAAAAATAAAGAATTTCAAACT</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:NONHSAG021570]] | + | [[Category:Antisense]][[Category:NONHSAG021570]][[Category:Transcripts]] |
Revision as of 10:27, 16 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT053127 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
antisense |
| Length |
677 nt |
| Genomic location |
chr17+:34190940..34191616 |
| Exon number |
1 |
| Exons |
34190940..34191616 |
| Genome context |
|
| Sequence |
000001 atgcggtgtt TCCAGTAAAG GCAGAGAATG TACTCTGTTC TGGCTTTCAG ACTTTCCTGG CTTTTCAGTC CAATGTCTTT 000080
000081 TCGGTTAGAC CAGGGAGATC TTCAGATTCT TCCTTCCCTA TCTTTTAGAT CCAGCTGCTC TTCGAAGAGG CCAAGGACAT 000160 000161 GGGATGGGTC ATGCTGCACA GTGGTGGCTG TGTCCTTACT GGATCTGACC CGCCATCCTA GCACCCCGGG GAGCCTCGTC 000240 000241 TGTGCCCACA TGCCACACAT CTCAGACCCT GTTTCCTTCT TTCCTGAACT CCAGCAGTTC TCAGACTCAC CACCTGCTGT 000320 000321 AGTGCCTCCA TGACAAACTT GTCACTGATG CGTAAGCATC CCAGAGCCTG CAGGAAGAGG GATGGAGGAA AGAGAAGGAA 000400 000401 ACTTGGACAT CATCCCCAGG AGTTACCATT CTCTGGATAC AGCTGGAGTT TGTGCTTGGA ATACCATCCC CACAACCACC 000480 000481 ATCACGTCAA GCAGCTTTTT ACTTTCCAGC TTGGCCAACT CCTGGCTGTA ACCACCCTCC TCTATCCTTG CCTCTTCTCA 000560 000561 CCTGTGCTGC ATAGAACTGC TCATCCTCTC TGGGAGATTC CAGGCTTTTT GTGAGTTCCT GCCCATCCAA GGCAGCCAGT 000640 000641 GGAAAGGAAG ACAGAGAAAA ATAAAGAATT TCAAACT |
Predicted Small Protein
| Name | NONHSAT053127_smProtein_329:613 |
| Length | 95 |
| Molecular weight | 11030.7915 |
| Aromaticity | 0.106382978723 |
| Instability index | 50.8021276596 |
| Isoelectric point | 10.0386352539 |
| Runs | 9 |
| Runs residual | 0.0330712303423 |
| Runs probability | 0.0470666745177 |
| Amino acid sequence | MTNLSLMRKHPRACRKRDGGKRRKLGHHPQELPFSGYSWSLCLEYHPHNHHHVKQLFTFQ LGQLLAVTTLLYPCLFSPVLHRTAHPLWEIPGFL |
| Secondary structure | LLLHHHHHLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHHHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
