Difference between revisions of "NONHSAT100124"

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sequence = <dnaseq>ATGCGCGGCCTGCCGGGGGCGGCCTCTTGCAGTTCCCGCCCTGACGCAGCGCGAGATTAGAGCTCCTGCTAGTCCCCAGCTGACCCTGGGCCTCAAAGGCAAGCCCTGACCTCAGTCACACGGGGTGGCGGTGATATGGTTTGGCTCTGTGTGCTTCACTCTGCCTCACTCGCCTTCCGCCTGCTGGACGCTGCCCTGTTCCCCGCAGGCGGCCGCCGTGGAGGGCAGGCACCGCGCTCCCTGGCTGCTCCCGGGGCCTTCCAAGCACAGCCACGGCCATGGGGCCGAAACCCAGACCTCGAGGGGCCTGCGGGCAGAGCTCGACAAGCCCAGCTGCTACACTGAAGGGAAAAACCTGAGGAAGCCCCTGACCTTCTTGAATAACCTGGATATTGCAGAATCATGCCTGGCACACGGCACTGGCAGAGACGCAGAAGGGAAAGTGTCCAGCGATGAGAGATACCGGCCAGGGGGCAAATCTTCAGCTTGCAGCACTCACTTTGCAGATCCAGTTGGAATTATTTGTGTTGACGCTCTCTGCTCTCTCCGCTCTCCCCTGGAAATGACGAGGAACTGAGTACAGTGGACAATGGCTTCCGTGTCCCTAGCTCCCCCCGAGCCATGAGCTGCTACATCAAAAGTCTGCAGTGGGCTGCCCTTCCCATAATATTTCAATTTAAGCACCGACTTGCTGCTGCGGAGTCATATCTCATTCATGCTGCAGCCTTTGCAGGAGTCAGGGATCATTATGGAGCAAGCACTGAGAAAAAACAGATTACAGCTTGGCACCGAGCAGCCAGGTTGCACCCCAGATGCTTCAGGGACATGGTGCCTGCTCTGGAGAATGGGGCAGCTTCCACACTGCCCAGGAGCCAGGGCTTCTGACCCAGGAGCGAAAGTCTGTCTCTTCCATTTCTGGGAGCTGGCAGTATTTGCACGACTTTCTGGGCCTCAGGCATCCCATTGCCCACCAGGAATTACCTTCCTCCAGGATCATGGTGAAGATGACATGAGATGCTAATGCTTGGCCTGCGGTTGCTATTTTTAGTTCTCCACTTTCCTGGAAAGCATGCAGTTGAAGTTCATGACGGTATTCTCTCAACGTGTGACTCAAAGACAGAGGCCGTTTCCCATCCACCGGTTCTCACACTGCCCCATTCTGCAGCTTCACCATCCACGCGCTAAGAAGGCAGGCCCCAAAGTCTCAGCACCCAGCCGCTGGGGTCCTCGCTCTTATGGACAGAAAACTCAAGAATGAATATGTTTCCCCATCTTGTGCCCTTTTGCCTGGAAACTATACAGAGCAGGGGTCCCTGCTGGCATTCCTTCTCTGTACTAGTACGGCTTCGGAAAGTACTGGTTCTCTGAGGAGCGCTCAGTTGCATCTGGAAGGTGCAGTGTGCACAGCGATGCCCCTTGACACCAAGGTGTGAGCATTTGAGCTGTGCTGGAAGGTTCTCCATGGAATAGTGCCCACCCTGGAGGGTCCTGTGCCGCGCACTTGAGGAGGCTGTGGTGGTGAGGAGAGACTCTGGAGCAACCCACACTCCCGATAAGTCAGATAAGAGTGCCTCCTCTAGGTAAGTTTATGTTGCAAATTTAAAGAGAGGAACCAAGAAACAGCAAGGACACTGAGCCAGGACTGAGAGTTTGGGTCTTAGGTGGCTTTGGGTCATTACGCCCTCTCAAGTGGATTGCTCTAAGCCCTGTTTATTTGTTAATGTGAATAGTTGGATGGAATTGCCTTTGTTCTAAAATCTTTTATTCTGCCTAAAGTCTCTGGGTCAGCAAGCACATGCCACATGGCTTCTCTCTCTGCATGGGAATGCACACCTGAGTAGGGAGGCTGGCCAGCCCGTGCTGCCCTGGTGGGGTGAGTGTTAGCTGGCTAGGGTTGCTGGAACAGAGGGGATTCAACCACAGGAATTTATTCTCTCACACCATGGAGGCCCAAAGCCCCAGATCATGGTGCTGTAGGGCCAGGCTCCCTCTGAGGGCACTAGGGAGGACCTGTGCCCATCCTCTCCAGCTCCTGGTGGTTCCTTGGCTCGTGGCAGCACAGCTTGTACCTTCACGTGGCACTCTCCCTTTATGTGTGTGGATGTGTCCAATTTTCCTTTTCTGTTGGGGCCCCAGCCGTAGTGGCTTAGAGGCTCACCTACTCTAACAGGACCTCGTCTGAACTCATGACATCTGCAAGACTGTGTATCCAAATAAGAGCACATTCTGAGATGCTGGGGGTTAGGACTTAAGCACAGAAGATTTGTGGGGAGGTACACAGTTCAATCCATCTGGAAGGTGGATAGCCATGGCAGGGTGGAAAGACGTGTGTGGGTATAGGCCGGAGGTGGCCTCACTGGAGAAACCTGTGCACGGCCCCACAAGGCAGCAGCTGAGCGTGGAAGGGGCTGGAGCTGCCCCGTGGTAGGGAAGGGGCCGTGTGGCCAGCAGCAGCATCTGCCTTTGTCATCACTGGGTGGGACCACGAGGGCAATGCTACTCTTCCCCTCACACCTTCTACAGGCAAGTTGGCCAGGTGTCAATGCAGCCAGGTGACACGGCCGCCTGGAGGGCAGGAGCAGACAGCCCCATGGAGGCTCTAGGAGATAGACAGGGAGGCCGCAGCTGTCCAGGAGCTGAAGTGAGCAGCAGAGGGCGCCGGGGGAGATGCGCCCTAGCACCAGGCTCTGAGTGCCCCAGCGAGCTTCCTTGCCTTGACTTTCCTCACTGGGAACCCGGGCCTGGAGTCCATATGAAGCCTCAGCCCAGGGGAGGGTCTACCTGTCCAGGAGGCTCCCACCATCCAGCTCGCCCTGGATGGTGCCCTCAGAGGTGCCTGGGCATGGGGTCACCTCGGAGAGTCTGGAGGGGCCTCCGGACAGTGCGGCCACGGGCTGTCCTCTGCTTCTCAGTGCCCAAGACAGGGAACCAGAGCACAGCACTGAACACGTTTTAGTGCTCTTTTAGTTCATGTGCTGCTTGCTGAATTTCCCTGAATTCAGAGAAGAGCCTGACGCAGAGGAAGCATCTGAGATCTTCTGTATGTTTTCTCGTCTGTGCAAAGTGTTTTCAACTCTTTCAAAGGTCGGCATTCACTGAATTTCAGCTCCCCTTGGCTTGATCTCTCATACAAAGGTTCTCAAATTCCCTGAAAATATGCAATGATTTTCTCACTCAATAAACGACTTTTCTGTCACC</dnaseq>|
 
sequence = <dnaseq>ATGCGCGGCCTGCCGGGGGCGGCCTCTTGCAGTTCCCGCCCTGACGCAGCGCGAGATTAGAGCTCCTGCTAGTCCCCAGCTGACCCTGGGCCTCAAAGGCAAGCCCTGACCTCAGTCACACGGGGTGGCGGTGATATGGTTTGGCTCTGTGTGCTTCACTCTGCCTCACTCGCCTTCCGCCTGCTGGACGCTGCCCTGTTCCCCGCAGGCGGCCGCCGTGGAGGGCAGGCACCGCGCTCCCTGGCTGCTCCCGGGGCCTTCCAAGCACAGCCACGGCCATGGGGCCGAAACCCAGACCTCGAGGGGCCTGCGGGCAGAGCTCGACAAGCCCAGCTGCTACACTGAAGGGAAAAACCTGAGGAAGCCCCTGACCTTCTTGAATAACCTGGATATTGCAGAATCATGCCTGGCACACGGCACTGGCAGAGACGCAGAAGGGAAAGTGTCCAGCGATGAGAGATACCGGCCAGGGGGCAAATCTTCAGCTTGCAGCACTCACTTTGCAGATCCAGTTGGAATTATTTGTGTTGACGCTCTCTGCTCTCTCCGCTCTCCCCTGGAAATGACGAGGAACTGAGTACAGTGGACAATGGCTTCCGTGTCCCTAGCTCCCCCCGAGCCATGAGCTGCTACATCAAAAGTCTGCAGTGGGCTGCCCTTCCCATAATATTTCAATTTAAGCACCGACTTGCTGCTGCGGAGTCATATCTCATTCATGCTGCAGCCTTTGCAGGAGTCAGGGATCATTATGGAGCAAGCACTGAGAAAAAACAGATTACAGCTTGGCACCGAGCAGCCAGGTTGCACCCCAGATGCTTCAGGGACATGGTGCCTGCTCTGGAGAATGGGGCAGCTTCCACACTGCCCAGGAGCCAGGGCTTCTGACCCAGGAGCGAAAGTCTGTCTCTTCCATTTCTGGGAGCTGGCAGTATTTGCACGACTTTCTGGGCCTCAGGCATCCCATTGCCCACCAGGAATTACCTTCCTCCAGGATCATGGTGAAGATGACATGAGATGCTAATGCTTGGCCTGCGGTTGCTATTTTTAGTTCTCCACTTTCCTGGAAAGCATGCAGTTGAAGTTCATGACGGTATTCTCTCAACGTGTGACTCAAAGACAGAGGCCGTTTCCCATCCACCGGTTCTCACACTGCCCCATTCTGCAGCTTCACCATCCACGCGCTAAGAAGGCAGGCCCCAAAGTCTCAGCACCCAGCCGCTGGGGTCCTCGCTCTTATGGACAGAAAACTCAAGAATGAATATGTTTCCCCATCTTGTGCCCTTTTGCCTGGAAACTATACAGAGCAGGGGTCCCTGCTGGCATTCCTTCTCTGTACTAGTACGGCTTCGGAAAGTACTGGTTCTCTGAGGAGCGCTCAGTTGCATCTGGAAGGTGCAGTGTGCACAGCGATGCCCCTTGACACCAAGGTGTGAGCATTTGAGCTGTGCTGGAAGGTTCTCCATGGAATAGTGCCCACCCTGGAGGGTCCTGTGCCGCGCACTTGAGGAGGCTGTGGTGGTGAGGAGAGACTCTGGAGCAACCCACACTCCCGATAAGTCAGATAAGAGTGCCTCCTCTAGGTAAGTTTATGTTGCAAATTTAAAGAGAGGAACCAAGAAACAGCAAGGACACTGAGCCAGGACTGAGAGTTTGGGTCTTAGGTGGCTTTGGGTCATTACGCCCTCTCAAGTGGATTGCTCTAAGCCCTGTTTATTTGTTAATGTGAATAGTTGGATGGAATTGCCTTTGTTCTAAAATCTTTTATTCTGCCTAAAGTCTCTGGGTCAGCAAGCACATGCCACATGGCTTCTCTCTCTGCATGGGAATGCACACCTGAGTAGGGAGGCTGGCCAGCCCGTGCTGCCCTGGTGGGGTGAGTGTTAGCTGGCTAGGGTTGCTGGAACAGAGGGGATTCAACCACAGGAATTTATTCTCTCACACCATGGAGGCCCAAAGCCCCAGATCATGGTGCTGTAGGGCCAGGCTCCCTCTGAGGGCACTAGGGAGGACCTGTGCCCATCCTCTCCAGCTCCTGGTGGTTCCTTGGCTCGTGGCAGCACAGCTTGTACCTTCACGTGGCACTCTCCCTTTATGTGTGTGGATGTGTCCAATTTTCCTTTTCTGTTGGGGCCCCAGCCGTAGTGGCTTAGAGGCTCACCTACTCTAACAGGACCTCGTCTGAACTCATGACATCTGCAAGACTGTGTATCCAAATAAGAGCACATTCTGAGATGCTGGGGGTTAGGACTTAAGCACAGAAGATTTGTGGGGAGGTACACAGTTCAATCCATCTGGAAGGTGGATAGCCATGGCAGGGTGGAAAGACGTGTGTGGGTATAGGCCGGAGGTGGCCTCACTGGAGAAACCTGTGCACGGCCCCACAAGGCAGCAGCTGAGCGTGGAAGGGGCTGGAGCTGCCCCGTGGTAGGGAAGGGGCCGTGTGGCCAGCAGCAGCATCTGCCTTTGTCATCACTGGGTGGGACCACGAGGGCAATGCTACTCTTCCCCTCACACCTTCTACAGGCAAGTTGGCCAGGTGTCAATGCAGCCAGGTGACACGGCCGCCTGGAGGGCAGGAGCAGACAGCCCCATGGAGGCTCTAGGAGATAGACAGGGAGGCCGCAGCTGTCCAGGAGCTGAAGTGAGCAGCAGAGGGCGCCGGGGGAGATGCGCCCTAGCACCAGGCTCTGAGTGCCCCAGCGAGCTTCCTTGCCTTGACTTTCCTCACTGGGAACCCGGGCCTGGAGTCCATATGAAGCCTCAGCCCAGGGGAGGGTCTACCTGTCCAGGAGGCTCCCACCATCCAGCTCGCCCTGGATGGTGCCCTCAGAGGTGCCTGGGCATGGGGTCACCTCGGAGAGTCTGGAGGGGCCTCCGGACAGTGCGGCCACGGGCTGTCCTCTGCTTCTCAGTGCCCAAGACAGGGAACCAGAGCACAGCACTGAACACGTTTTAGTGCTCTTTTAGTTCATGTGCTGCTTGCTGAATTTCCCTGAATTCAGAGAAGAGCCTGACGCAGAGGAAGCATCTGAGATCTTCTGTATGTTTTCTCGTCTGTGCAAAGTGTTTTCAACTCTTTCAAAGGTCGGCATTCACTGAATTTCAGCTCCCCTTGGCTTGATCTCTCATACAAAGGTTCTCAAATTCCCTGAAAATATGCAATGATTTTCTCACTCAATAAACGACTTTTCTGTCACC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:NONHSAG039707]]
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[[Category:Intergenic]][[Category:NONHSAG039707]][[Category:Transcripts]]

Revision as of 10:28, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT100124

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3198 nt

Genomic location

chr5-:3417266..3536208

Exon number

5

Exons

3417266..3419430,3421185..3421418,3422396..3422736,3531867..3531992,3535876..3536208

Genome context

Sequence
000001 ATGCGCGGCC TGCCGGGGGC GGCCTCTTGC AGTTCCCGCC CTGACGCAGC GCGAGATTAG AGCTCCTGCT AGTCCCCAGC 000080
000081 TGACCCTGGG CCTCAAAGGC AAGCCCTGAC CTCAGTCACA CGGGGTGGCG GTGATATGGT TTGGCTCTGT GTGCTTCACT 000160
000161 CTGCCTCACT CGCCTTCCGC CTGCTGGACG CTGCCCTGTT CCCCGCAGGC GGCCGCCGTG GAGGGCAGGC ACCGCGCTCC 000240
000241 CTGGCTGCTC CCGGGGCCTT CCAAGCACAG CCACGGCCAT GGGGCCGAAA CCCAGACCTC GAGGGGCCTG CGGGCAGAGC 000320
000321 TCGACAAGCC CAGCTGCTAC ACTGAAGGGA AAAACCTGAG GAAGCCCCTG ACCTTCTTGA ATAACCTGGA TATTGCAGAA 000400
000401 TCATGCCTGG CACACGGCAC TGGCAGAGAC GCAGAAGGGA AAGTGTCCAG CGATGAGAGA TACCGGCCAG GGGGCAAATC 000480
000481 TTCAGCTTGC AGCACTCACT TTGCAGATCC AGTTGGAATT ATTTGTGTTG ACGCTCTCTG CTCTCTCCGC TCTCCCCTGG 000560
000561 AAATGACGAG GAACTGAGTA CAGTGGACAA TGGCTTCCGT GTCCCTAGCT CCCCCCGAGC CATGAGCTGC TACATCAAAA 000640
000641 GTCTGCAGTG GGCTGCCCTT CCCATAATAT TTCAATTTAA GCACCGACTT GCTGCTGCGG AGTCATATCT CATTCATGCT 000720
000721 GCAGCCTTTG CAGGAGTCAG GGATCATTAT GGAGCAAGCA CTGAGAAAAA ACAGATTACA GCTTGGCACC GAGCAGCCAG 000800
000801 GTTGCACCCC AGATGCTTCA GGGACATGGT GCCTGCTCTG GAGAATGGGG CAGCTTCCAC ACTGCCCAGG AGCCAGGGCT 000880
000881 TCTGACCCAG GAGCGAAAGT CTGTCTCTTC CATTTCTGGG AGCTGGCAGT ATTTGCACGA CTTTCTGGGC CTCAGGCATC 000960
000961 CCATTGCCCA CCAGGAATTA CCTTCCTCCA GGATCATGGT GAAGATGACA TGAGATGCTA ATGCTTGGCC TGCGGTTGCT 001040
001041 ATTTTTAGTT CTCCACTTTC CTGGAAAGCA TGCAGTTGAA GTTCATGACG GTATTCTCTC AACGTGTGAC TCAAAGACAG 001120
001121 AGGCCGTTTC CCATCCACCG GTTCTCACAC TGCCCCATTC TGCAGCTTCA CCATCCACGC GCTAAGAAGG CAGGCCCCAA 001200
001201 AGTCTCAGCA CCCAGCCGCT GGGGTCCTCG CTCTTATGGA CAGAAAACTC AAGAATGAAT ATGTTTCCCC ATCTTGTGCC 001280
001281 CTTTTGCCTG GAAACTATAC AGAGCAGGGG TCCCTGCTGG CATTCCTTCT CTGTACTAGT ACGGCTTCGG AAAGTACTGG 001360
001361 TTCTCTGAGG AGCGCTCAGT TGCATCTGGA AGGTGCAGTG TGCACAGCGA TGCCCCTTGA CACCAAGGTG TGAGCATTTG 001440
001441 AGCTGTGCTG GAAGGTTCTC CATGGAATAG TGCCCACCCT GGAGGGTCCT GTGCCGCGCA CTTGAGGAGG CTGTGGTGGT 001520
001521 GAGGAGAGAC TCTGGAGCAA CCCACACTCC CGATAAGTCA GATAAGAGTG CCTCCTCTAG GTAAGTTTAT GTTGCAAATT 001600
001601 TAAAGAGAGG AACCAAGAAA CAGCAAGGAC ACTGAGCCAG GACTGAGAGT TTGGGTCTTA GGTGGCTTTG GGTCATTACG 001680
001681 CCCTCTCAAG TGGATTGCTC TAAGCCCTGT TTATTTGTTA ATGTGAATAG TTGGATGGAA TTGCCTTTGT TCTAAAATCT 001760
001761 TTTATTCTGC CTAAAGTCTC TGGGTCAGCA AGCACATGCC ACATGGCTTC TCTCTCTGCA TGGGAATGCA CACCTGAGTA 001840
001841 GGGAGGCTGG CCAGCCCGTG CTGCCCTGGT GGGGTGAGTG TTAGCTGGCT AGGGTTGCTG GAACAGAGGG GATTCAACCA 001920
001921 CAGGAATTTA TTCTCTCAC