Difference between revisions of "NONHSAT028961"
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sequence = <dnaseq>cgatctcttgacctcatgatccacccacatcagactcccaaagtgctaggattacaggcgtgagccgctgcacctggcatttctttttttttaaaaaaagagacaaggtcttgcttgcccaggctgatctagaactcctgggctcaagcagtcctctcacctcagcatcccaaagtgctggaattGTTGGCCTTTATTCCCTATACTTCCTATTTTGAGCCACTAAGCAGTAACCATTCAACTAAGATATCTTTGAAAATGACTGCTACCTTATATCCCTTCTCACCTTAGGCCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGCCCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCATGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCT</dnaseq>| | sequence = <dnaseq>cgatctcttgacctcatgatccacccacatcagactcccaaagtgctaggattacaggcgtgagccgctgcacctggcatttctttttttttaaaaaaagagacaaggtcttgcttgcccaggctgatctagaactcctgggctcaagcagtcctctcacctcagcatcccaaagtgctggaattGTTGGCCTTTATTCCCTATACTTCCTATTTTGAGCCACTAAGCAGTAACCATTCAACTAAGATATCTTTGAAAATGACTGCTACCTTATATCCCTTCTCACCTTAGGCCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGACCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGCCCCGTGGAGCCTTTCCCCCCAGAGGGCCCCGCCCAGTGCAGTCGGTGGTACCTGAGATGGAGGAGTCGGGAGCACAGCTGCTGCTGGAAATGCTGACTTTTAACCCACACAAGCGAATCTCTGCCTTTCGAGCTCTGCAGCACTCTTATCTACATAAGGATGAAGGTAATCCGGAGTGAGCAATGGAGTGGCTGCCATGGAAGGAAGAAAAGCTGCCATTTCCCTTCTGGACACTGAGAGGGCAATCTTTGCCTTTATCTCTGAGGCTATGGAGGGTCCTCCTCCATCTTTCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG011450]] | + | [[Category:Sense]][[Category:NONHSAG011450]][[Category:Transcripts]] |
Revision as of 10:28, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT028961 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
685 nt |
Genomic location |
chr12-:58142194..58143578 |
Exon number |
3 |
Exons |
58142194..58142400,58142965..58143100,58143237..58143578 |
Genome context |
|
Sequence |
000001 cgatctcttg acctcatgat ccacccacat cagactccca aagtgctagg attacaggcg tgagccgctg cacctggcat 000080
000081 ttcttttttt ttaaaaaaag agacaaggtc ttgcttgccc aggctgatct agaactcctg ggctcaagca gtcctctcac 000160 000161 ctcagcatcc caaagtgctg gaattGTTGG CCTTTATTCC CTATACTTCC TATTTTGAGC CACTAAGCAG TAACCATTCA 000240 000241 ACTAAGATAT CTTTGAAAAT GACTGCTACC TTATATCCCT TCTCACCTTA GGCCTCTCTT CTGTGGAAAC TCTGAAGCCG 000320 000321 ACCAGTTGGG CAAAATCTTT GACCTGATTG GGCTGCCTCC AGAGGATGAC TGGCCTCGAG ATGTATCCCT GCCCCGTGGA 000400 000401 GCCTTTCCCC CCAGAGGGCC CCGCCCAGTG CAGTCGGTGG TACCTGAGAT GGAGGAGTCG GGAGCACAGC TGCTGCTGGA 000480 000481 AATGCTGACT TTTAACCCAC ACAAGCGAAT CTCTGCCTTT CGAGCTCTGC AGCACTCTTA TCTACATAAG GATGAAGGTA 000560 000561 ATCCGGAGTG AGCAATGGAG TGGCTGCCAT GGAAGGAAGA AAAGCTGCCA TTTCCCTTCT GGACACTGAG AGGGCAATCT 000640 000641 TTGCCTTTAT CTCTGAGGCT ATGGAGGGTC CTCCTCCATC TTTCT |
Predicted Small Protein
Name | NONHSAT028961_smProtein_365:487 |
Length | 41 |
Molecular weight | 4818.565 |
Aromaticity | 0.15 |
Instability index | 116.4475 |
Isoelectric point | 7.62664794922 |
Runs | 8 |
Runs residual | 0.0219758064516 |
Runs probability | 0.0340818759936 |
Amino acid sequence | MTGLEMYPCPVEPFPPEGPAQCSRWYLRWRSREHSCCWKC |
Secondary structure | LLLLEELLLLLLLLLLLLLLHHHHHHEELLLLLLLEEELL |
PRMN | - |
PiMo | - |