Difference between revisions of "NONHSAT072040"
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sequence = <dnaseq>AATTGTATGGAATATTTTTACATTTCACCAGCATCCATCAATCTCGTACTTTTGGTAAACATTTCCATCATCTCCTATTTCAGAAATTCTGTACTTTCAGGCACTAGGTTTACTAAATACCACATCTGCCTATTTACTCAAATGATGTCCTTTACTTAAAGCCTTTTTGCATTATCCAGTTTTCCTGATAGTTTGTATAGATGATTGCCTGAATTTCTCAAAAAGCAAGCTTCCCTTAAGCGTCAAAATTATTTTTATTTCTTTGCAGTAATTTCAATTTACGTTTCAGTCCTTGCTTACATTTTGGGAGACCCAGCTATCTGCCAAAGCCTGAAGGCACAGAAGGTTTATTCTCATCAATGTCCTTTCTACATCAGCATTCAGGGCTAGTGGCTGTCATTTTTCGTGATGATTTTATGGTTTTTATAACCTCTTTGTTACATGATTTTAGGATAACTTTCTATATGAATGAGACTATCCTATATCTTCTTCCCTTTCATCCCATTCTAGATATACTGTGAGTTCTAAAAAATTACACTTGCCCAAACTCACTGTTTTCTTGGTACCTGGTTGTCATTTGTACCACTTCAAGTAATCATCCtttttctttgttttgttttgttttgttttgttttttatttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccacctaattttttgtatttttagtggagacagggtttcaccgtgttagccaggaaggtcttgatctcctgacctcgtgatcctcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccCGTAATCATCCTTTTTCTTAAGGTACAGATTCCAGCACTGAGATGAGTTCTCTGGTTGTACTTTGTCAATAGTTTTCTCATCGCTAGTT</dnaseq>| | sequence = <dnaseq>AATTGTATGGAATATTTTTACATTTCACCAGCATCCATCAATCTCGTACTTTTGGTAAACATTTCCATCATCTCCTATTTCAGAAATTCTGTACTTTCAGGCACTAGGTTTACTAAATACCACATCTGCCTATTTACTCAAATGATGTCCTTTACTTAAAGCCTTTTTGCATTATCCAGTTTTCCTGATAGTTTGTATAGATGATTGCCTGAATTTCTCAAAAAGCAAGCTTCCCTTAAGCGTCAAAATTATTTTTATTTCTTTGCAGTAATTTCAATTTACGTTTCAGTCCTTGCTTACATTTTGGGAGACCCAGCTATCTGCCAAAGCCTGAAGGCACAGAAGGTTTATTCTCATCAATGTCCTTTCTACATCAGCATTCAGGGCTAGTGGCTGTCATTTTTCGTGATGATTTTATGGTTTTTATAACCTCTTTGTTACATGATTTTAGGATAACTTTCTATATGAATGAGACTATCCTATATCTTCTTCCCTTTCATCCCATTCTAGATATACTGTGAGTTCTAAAAAATTACACTTGCCCAAACTCACTGTTTTCTTGGTACCTGGTTGTCATTTGTACCACTTCAAGTAATCATCCtttttctttgttttgttttgttttgttttgttttttatttgagacggagtctcgctctgtcgcccaggctggagtgcagtggtgcaatctccgcctcccgggttcacgccattctcctgcctcagcctcccgagtagctgggactacaggcgcccgccaccacgcccacctaattttttgtatttttagtggagacagggtttcaccgtgttagccaggaaggtcttgatctcctgacctcgtgatcctcccgccttggcctcccaaagtgctgggattacaggcgtgagccaccgcgcccggccCGTAATCATCCTTTTTCTTAAGGTACAGATTCCAGCACTGAGATGAGTTCTCTGGTTGTACTTTGTCAATAGTTTTCTCATCGCTAGTT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:NONHSAG028399]] | + | [[Category:Intergenic]][[Category:NONHSAG028399]][[Category:Transcripts]] |
Revision as of 10:42, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT072040 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
995 nt |
Genomic location |
chr2-:85913176..85914170 |
Exon number |
1 |
Exons |
85913176..85914170 |
Genome context |
|
Sequence |
000001 AATTGTATGG AATATTTTTA CATTTCACCA GCATCCATCA ATCTCGTACT TTTGGTAAAC ATTTCCATCA TCTCCTATTT 000080
000081 CAGAAATTCT GTACTTTCAG GCACTAGGTT TACTAAATAC CACATCTGCC TATTTACTCA AATGATGTCC TTTACTTAAA 000160 000161 GCCTTTTTGC ATTATCCAGT TTTCCTGATA GTTTGTATAG ATGATTGCCT GAATTTCTCA AAAAGCAAGC TTCCCTTAAG 000240 000241 CGTCAAAATT ATTTTTATTT CTTTGCAGTA ATTTCAATTT ACGTTTCAGT CCTTGCTTAC ATTTTGGGAG ACCCAGCTAT 000320 000321 CTGCCAAAGC CTGAAGGCAC AGAAGGTTTA TTCTCATCAA TGTCCTTTCT ACATCAGCAT TCAGGGCTAG TGGCTGTCAT 000400 000401 TTTTCGTGAT GATTTTATGG TTTTTATAAC CTCTTTGTTA CATGATTTTA GGATAACTTT CTATATGAAT GAGACTATCC 000480 000481 TATATCTTCT TCCCTTTCAT CCCATTCTAG ATATACTGTG AGTTCTAAAA AATTACACTT GCCCAAACTC ACTGTTTTCT 000560 000561 TGGTACCTGG TTGTCATTTG TACCACTTCA AGTAATCATC Ctttttcttt gttttgtttt gttttgtttt gttttttatt 000640 000641 tgagacggag tctcgctctg tcgcccaggc tggagtgcag tggtgcaatc tccgcctccc gggttcacgc cattctcctg 000720 000721 cctcagcctc ccgagtagct gggactacag gcgcccgcca ccacgcccac ctaatttttt gtatttttag tggagacagg 000800 000801 gtttcaccgt gttagccagg aaggtcttga tctcctgacc tcgtgatcct cccgccttgg cctcccaaag tgctgggatt 000880 000881 acaggcgtga gccaccgcgc ccggccCGTA ATCATCCTTT TTCTTAAGGT ACAGATTCCA GCACTGAGAT GAGTTCTCTG 000960 000961 GTTGTACTTT GTCAATAGTT TTCTCATCGC TAGTT |
Predicted Small Protein
Name | NONHSAT072040_smProtein_359:520 |
Length | 54 |
Molecular weight | 6342.4505 |
Aromaticity | 0.169811320755 |
Instability index | 49.6530188679 |
Isoelectric point | 5.58721923828 |
Runs | 8 |
Runs residual | 0.00931891394386 |
Runs probability | 0.0791048401342 |
Amino acid sequence | MSFLHQHSGLVAVIFRDDFMVFITSLLHDFRITFYMNETILYLLPFHPILDIL |
Secondary structure | LLLLLLLLLEEEEEELLLHHHHHHHHHLLLEEEEEHHHHHHHHLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooo |