Difference between revisions of "NONHSAT068498"

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sequence = <dnaseq>AGTGCGCCTGCGGAGGCGGTCCTATGACGGAAGTGTGGAACTGGTCTCAATCGGTTGACCACCTTAAGGAAATAGGATTTACACTGTGGACAGAGATGTGTCCTTTACACTTCATTTGAACCAATATGCCCATGCTCCTGTGGAGGCTGAGTTGGAAAGTGACACGAAGCTGCCCCCCCGCAAGAGAGCAGaaaaagatgttgctggtccatttgacgaagaagtccagagcggcttgtgacttcagtctggctttgcagagcccaggtgctctctccaccttctgccaggttcccctatgaaggctttgctctcagactctccccttgtggagacaaaaatcccacagcaAGTGGAAACAGAAGTGCCTTGGAAAAAGTTATTCTGGCAGCTCCTATACAAGTCCCCCATCAGATGCTGGTATTGGACCAGCTTTGGTTATAAAGCCCTGCTGTGGCACCAAAAGGAATGTCGTCCTGATACAGCAGCCTCGGGTCACCCAATCCACTCCAGATACTATGGCTGCAGCATCAATGTAAGCAGACAAGTTG</dnaseq>|
 
sequence = <dnaseq>AGTGCGCCTGCGGAGGCGGTCCTATGACGGAAGTGTGGAACTGGTCTCAATCGGTTGACCACCTTAAGGAAATAGGATTTACACTGTGGACAGAGATGTGTCCTTTACACTTCATTTGAACCAATATGCCCATGCTCCTGTGGAGGCTGAGTTGGAAAGTGACACGAAGCTGCCCCCCCGCAAGAGAGCAGaaaaagatgttgctggtccatttgacgaagaagtccagagcggcttgtgacttcagtctggctttgcagagcccaggtgctctctccaccttctgccaggttcccctatgaaggctttgctctcagactctccccttgtggagacaaaaatcccacagcaAGTGGAAACAGAAGTGCCTTGGAAAAAGTTATTCTGGCAGCTCCTATACAAGTCCCCCATCAGATGCTGGTATTGGACCAGCTTTGGTTATAAAGCCCTGCTGTGGCACCAAAAGGAATGTCGTCCTGATACAGCAGCCTCGGGTCACCCAATCCACTCCAGATACTATGGCTGCAGCATCAATGTAAGCAGACAAGTTG</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG026753]]
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[[Category:Sense]][[Category:NONHSAG026753]][[Category:Transcripts]]

Revision as of 10:55, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT068498

Source

NONCODE4.0

Same with

,

Classification

sense

Length

551 nt

Genomic location

chr2-:260343..264810

Exon number

3

Exons

260343..260702,263211..263372,264782..264810

Genome context

Sequence
000001 AGTGCGCCTG CGGAGGCGGT CCTATGACGG AAGTGTGGAA CTGGTCTCAA TCGGTTGACC ACCTTAAGGA AATAGGATTT 000080
000081 ACACTGTGGA CAGAGATGTG TCCTTTACAC TTCATTTGAA CCAATATGCC CATGCTCCTG TGGAGGCTGA GTTGGAAAGT 000160
000161 GACACGAAGC TGCCCCCCCG CAAGAGAGCA Gaaaaagatg ttgctggtcc atttgacgaa gaagtccaga gcggcttgtg 000240
000241 acttcagtct ggctttgcag agcccaggtg ctctctccac cttctgccag gttcccctat gaaggctttg ctctcagact 000320
000321 ctccccttgt ggagacaaaa atcccacagc aAGTGGAAAC AGAAGTGCCT TGGAAAAAGT TATTCTGGCA GCTCCTATAC 000400
000401 AAGTCCCCCA TCAGATGCTG GTATTGGACC AGCTTTGGTT ATAAAGCCCT GCTGTGGCAC CAAAAGGAAT GTCGTCCTGA 000480
000481 TACAGCAGCC TCGGGTCACC CAATCCACTC CAGATACTAT GGCTGCAGCA TCAATGTAAG CAGACAAGTT G
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Predicted Small Protein

Name NONHSAT068498_smProtein_125:301
Length 59
Molecular weight 6571.8933
Aromaticity 0.0689655172414
Instability index 84.4327586207
Isoelectric point 10.215637207
Runs 11
Runs residual 0.0330617658204
Runs probability 0.0390390390391
Amino acid sequence MPMLLWRLSWKVTRSCPPAREQKKMLLVHLTKKSRAACDFSLALQSPGALSTFCQVPL
Secondary structure LLHHHHHHHHHHHLLLLHHHHHHHHHHHHHLLLLHHHHLHHHHHLLLLLLLLEEELLL
PRMN -
PiMo -