Difference between revisions of "NONHSAT004831"
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sequence = <dnaseq>CACCTAATAAGAGTAAAGGCAAAGAGCCTCTCAAGCACTGTGAAAAATCACTTTCTCTTGTTGTATTCTTGGAGCCCCTGCTAATTCATTATTGAAAAATACCTGCTGCCTGCATTTGGCCTTATGTTGTCATTTACTTGggtctgtgcatggcgtttagaaggctacaccttaggctgggggtcaagaatgtcttccctgatgtgaggtttacacagagatctgaagaatgaagagtccagctaagttaagtgggagcggattaagggaatgcaaggacatgaaagagtgtcctaggcagagggaacaacatatacaaaggccctgaggtgggagtgaacaaggaactgagagaagaactgagagaaggccactgtggAAAGCCAGATGCTGTGTGACATGAATAATGGGACACAGGAAATTGAGATATTAGCAAAAGAGAGATTGATGACCCATAGGCTTGAAGATGTACTGGAACTAAAGTAAGGGGCGAGGATAAATAAAAAGAGGGAGAAATTGGAGAAACAGAGTGCTTGGAAGCCCTGATGAATTTGAGGAAAAGGATGGTGATAGAGTTGACCTAGCCAGCTAGAAGAGTAGTACTTTTTAGTCAGTGAGCCCTCCATCCCATTTCTCATTAATTCTTGTAACACTTTCTCACTTCCTATATTCTGTCATATTTTATAGTTGTTTATATAATTATCTTA</dnaseq>| | sequence = <dnaseq>CACCTAATAAGAGTAAAGGCAAAGAGCCTCTCAAGCACTGTGAAAAATCACTTTCTCTTGTTGTATTCTTGGAGCCCCTGCTAATTCATTATTGAAAAATACCTGCTGCCTGCATTTGGCCTTATGTTGTCATTTACTTGggtctgtgcatggcgtttagaaggctacaccttaggctgggggtcaagaatgtcttccctgatgtgaggtttacacagagatctgaagaatgaagagtccagctaagttaagtgggagcggattaagggaatgcaaggacatgaaagagtgtcctaggcagagggaacaacatatacaaaggccctgaggtgggagtgaacaaggaactgagagaagaactgagagaaggccactgtggAAAGCCAGATGCTGTGTGACATGAATAATGGGACACAGGAAATTGAGATATTAGCAAAAGAGAGATTGATGACCCATAGGCTTGAAGATGTACTGGAACTAAAGTAAGGGGCGAGGATAAATAAAAAGAGGGAGAAATTGGAGAAACAGAGTGCTTGGAAGCCCTGATGAATTTGAGGAAAAGGATGGTGATAGAGTTGACCTAGCCAGCTAGAAGAGTAGTACTTTTTAGTCAGTGAGCCCTCCATCCCATTTCTCATTAATTCTTGTAACACTTTCTCACTTCCTATATTCTGTCATATTTTATAGTTGTTTATATAATTATCTTA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG002228]] | + | [[Category:Intergenic]][[Category:NONHSAG002228]][[Category:Transcripts]] |
Revision as of 11:07, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT004831 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
707 nt |
| Genomic location |
chr1+:101529170..101551174 |
| Exon number |
3 |
| Exons |
101529170..101529195,101549017..101549130,101550608..101551174 |
| Genome context |
|
| Sequence |
000001 CACCTAATAA GAGTAAAGGC AAAGAGCCTC TCAAGCACTG TGAAAAATCA CTTTCTCTTG TTGTATTCTT GGAGCCCCTG 000080
000081 CTAATTCATT ATTGAAAAAT ACCTGCTGCC TGCATTTGGC CTTATGTTGT CATTTACTTG ggtctgtgca tggcgtttag 000160 000161 aaggctacac cttaggctgg gggtcaagaa tgtcttccct gatgtgaggt ttacacagag atctgaagaa tgaagagtcc 000240 000241 agctaagtta agtgggagcg gattaaggga atgcaaggac atgaaagagt gtcctaggca gagggaacaa catatacaaa 000320 000321 ggccctgagg tgggagtgaa caaggaactg agagaagaac tgagagaagg ccactgtggA AAGCCAGATG CTGTGTGACA 000400 000401 TGAATAATGG GACACAGGAA ATTGAGATAT TAGCAAAAGA GAGATTGATG ACCCATAGGC TTGAAGATGT ACTGGAACTA 000480 000481 AAGTAAGGGG CGAGGATAAA TAAAAAGAGG GAGAAATTGG AGAAACAGAG TGCTTGGAAG CCCTGATGAA TTTGAGGAAA 000560 000561 AGGATGGTGA TAGAGTTGAC CTAGCCAGCT AGAAGAGTAG TACTTTTTAG TCAGTGAGCC CTCCATCCCA TTTCTCATTA 000640 000641 ATTCTTGTAA CACTTTCTCA CTTCCTATAT TCTGTCATAT TTTATAGTTG TTTATATAAT TATCTTA |
Predicted Small Protein
| Name | NONHSAT004831_smProtein_149:232 |
| Length | 28 |
| Molecular weight | 3302.8114 |
| Aromaticity | 0.111111111111 |
| Instability index | 78.5111111111 |
| Isoelectric point | 11.4176635742 |
| Runs | 5 |
| Runs residual | 0.0214707461084 |
| Runs probability | 0.0409291644586 |
| Amino acid sequence | MAFRRLHLRLGVKNVFPDVRFTQRSEE |
| Secondary structure | LHHHHHHHHLLLLLLLLLLLEEELLLL |
| PRMN | - |
| PiMo | - |
