Difference between revisions of "NONHSAT095716"

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sequence = <dnaseq>AAGAGCAAAGATTTGACAATGCATAGAATTAACATTGGTTTGTGGGCCACCTTCTGGGCCAGCACCAAAGACTGAAAAAATATTTTGCCCCCTAAAAGTTGTTATTGAGTCTTGTCAAATCACATTGCTCTGTCAGAAGGTAAGACAAATCAGTGTGGACTGAGAGCAAGGTCAGCACCGTGAACAGCCATTGCGGTTCCTTTAACCCACTGGGAATTCATGCAGTGAAGAAGCAACACACCATGAGGCAAATGGCTCAAACCCAAAGACCAGAGGTTCAGGGGATATATATATATAtttttttaatctgtagagatgggatctcactatcttgcccaggctggtctcgaactcttgggctcatgctgtcctacctcagacttccaagtagctgggttttctttgggctaattatttttttgtagagatggaggtctcgctgtgttgcccaggctggtctcaaattcctggactcaagcagtccatctgcctcagcctcccaaagtgatgggattacaggcgtgagctgctgtgcctggcAGAACAGTATGAAGTGTTAACGCCAAAATTTGTTTTAGCTATCATATATAAATCATAAGCATATTA</dnaseq>|
 
sequence = <dnaseq>AAGAGCAAAGATTTGACAATGCATAGAATTAACATTGGTTTGTGGGCCACCTTCTGGGCCAGCACCAAAGACTGAAAAAATATTTTGCCCCCTAAAAGTTGTTATTGAGTCTTGTCAAATCACATTGCTCTGTCAGAAGGTAAGACAAATCAGTGTGGACTGAGAGCAAGGTCAGCACCGTGAACAGCCATTGCGGTTCCTTTAACCCACTGGGAATTCATGCAGTGAAGAAGCAACACACCATGAGGCAAATGGCTCAAACCCAAAGACCAGAGGTTCAGGGGATATATATATATAtttttttaatctgtagagatgggatctcactatcttgcccaggctggtctcgaactcttgggctcatgctgtcctacctcagacttccaagtagctgggttttctttgggctaattatttttttgtagagatggaggtctcgctgtgttgcccaggctggtctcaaattcctggactcaagcagtccatctgcctcagcctcccaaagtgatgggattacaggcgtgagctgctgtgcctggcAGAACAGTATGAAGTGTTAACGCCAAAATTTGTTTTAGCTATCATATATAAATCATAAGCATATTA</dnaseq>|
 
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[[Category:Antisense]][[Category:NONHSAG037585]]
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[[Category:Antisense]][[Category:NONHSAG037585]][[Category:Transcripts]]

Revision as of 11:10, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT095716

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

606 nt

Genomic location

chr4+:17632547..17634062

Exon number

2

Exons

17632547..17632998,17633909..17634062

Genome context

Sequence
000001 AAGAGCAAAG ATTTGACAAT GCATAGAATT AACATTGGTT TGTGGGCCAC CTTCTGGGCC AGCACCAAAG ACTGAAAAAA 000080
000081 TATTTTGCCC CCTAAAAGTT GTTATTGAGT CTTGTCAAAT CACATTGCTC TGTCAGAAGG TAAGACAAAT CAGTGTGGAC 000160
000161 TGAGAGCAAG GTCAGCACCG TGAACAGCCA TTGCGGTTCC TTTAACCCAC TGGGAATTCA TGCAGTGAAG AAGCAACACA 000240
000241 CCATGAGGCA AATGGCTCAA ACCCAAAGAC CAGAGGTTCA GGGGATATAT ATATATAttt ttttaatctg tagagatggg 000320
000321 atctcactat cttgcccagg ctggtctcga actcttgggc tcatgctgtc ctacctcaga cttccaagta gctgggtttt 000400
000401 ctttgggcta attatttttt tgtagagatg gaggtctcgc tgtgttgccc aggctggtct caaattcctg gactcaagca 000480
000481 gtccatctgc ctcagcctcc caaagtgatg ggattacagg cgtgagctgc tgtgcctggc AGAACAGTAT GAAGTGTTAA 000560
000561 CGCCAAAATT TGTTTTAGCT ATCATATATA AATCATAAGC ATATTA
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Predicted Small Protein

Name NONHSAT095716_smProtein_242:424
Length 61
Molecular weight 6987.3056
Aromaticity 0.15
Instability index 41.1983333333
Isoelectric point 9.38006591797
Runs 11
Runs residual 0.0335992907801
Runs probability 0.0482969600617
Amino acid sequence MRQMAQTQRPEVQGIYIYIFLICRDGISLSCPGWSRTLGLMLSYLRLPSSWVFFGLIIFL
Secondary structure LLHHHHLLLLLLLEEEEEEEEEELLLEEEELLLHHHHHHHHHHHLLLLLLLLLLLEEEEL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTTTTTTTTTTTTTTToo