Difference between revisions of "NONHSAT079142"

Revision as of 11:13, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID	NONHSAT079142
Source	NONCODE4.0
Same with	,
Classification	sense
Length	1918 nt
Genomic location	chr20+:25205267..25207365
Exon number	2
Exons	25205267..25205953,25206135..25207365
Genome context
Sequence	000001 ATGTGTGGGT CCAAAGAGCT CAAATTTGTA CATCTTTCCA GAAAAAGTAC TACCCTTCCC CTCCCCCAAA AGTGGCTTTT 000080 000081 TTAAAGCTTT TGTGTCATTT TCCCATTTGT GCCCATGGAC ACTGGGTATC CACAACTACA GCAGGAAAAG GCTTTGAGCA 000160 000161 GAATCCCAGG ACAGCTCTTG GTGGATTTGT CCTTCCTCAA GAGCAGGAGT GGATTGTTCT GAGCTGGCTT TGGTGTTTTC 000240 000241 TTTCCCCAGA AAGCTTAGGT TTTATGCAGC TTGACACCTG GGAGAGGTGT CCAGGGTCTT AGATGTAGAA ATGTGGCTTG 000320 000321 GGAGACATTG GCCCATGACC CTAACACCAG GCGTGCAAAT CCCCTTGGAG CCCAGACCCA GTGGCAGCCG GGGTTGCCGC 000400 000401 CCACCTGCCT GTGCTGTGCA CTGGGTGCCT TCTGCGCTCA GCTGCGGCCT TGTCTGTGAA TCCGGAGTGC GGAGCCAGCG 000480 000481 GGTGCCTGTA GTGGGTGGAA TTGGGGTCTG CACTTGCCCC TCCGCCCCCA GGTGGGAGTC ACCTGGAGCG TGAAGGGACG 000560 000561 TGTCTCATCC CCAGTGTGTC GGACCCTGGA GACACAGCCG CAGAGCAGCC CCTTCTCATG CATGGACCTC ACCTACGTCA 000640 000641 GCCTGCTACT CCAGGAGTTC GGCTTTCCCA GGAGCAAAGT GCTGAAGCTC ACTCGGAAAA TTGACAATGT TGAGACCAGC 000720 000721 TGGGCTCTGG GGGCCATTTT TCATTACATC GACTCCCTGA ACAGACAGAA GAGTCCAGCC TCATAGTGGC CGAGCCATCC 000800 000801 CTGTCCCCGT CAGCAGTGTC TGTGTGTCTG CATAAACCCT CCTGTCCTGG ACGTGACTTC ATCCTGAGGA GCCACAGCAC 000880 000881 AGGCCGTGCT GGCACTTTCT GCACACTGGC TCTGGGACTT GCAGAAGGCC TGGTGCTGCC CTGGCATCAG CCTCTTCCAG 000960 000961 TCACATCTGG CCAGAGGGCT GTCTGGACCT GGGCCCTGCT CAATGCCACC TGTCTGCCTG GGCTCCAAGT GGGCAGGACC 001040 001041 AGGACAGAAC CACAGGCACA CACTGAGGGG GCAGTGTGGC TCCCTGCCTG TCCCATCCCC ATGCCCCGTC CGCGGGGCTG 001120 001121 TGGCTGCTGC TGTGCATGTC CCTGCGATGG GAGTCTTGTC TCCCAGCCTG TCAGTTTCCT CCCCAGGGCA GAGCTCCCCT 001200 001201 TCCTGCAAGA GTCTGGGAGG CGGTGCAGGC TGTCCTGGCT GCTCTGGGGA AGCCGAGGGA CAGCCATAAC ACCCCCGGGA 001280 001281 CAGTAGGTCT GGGCGGCACC ACTGGGAACT CTGGACTTGA GTGTGTTTGC CTCTTCCTTG GGTATGAATG TGTGAGTTCA 001360 001361 CCCAGAGGCC TGCTCTCCTC ACACATTGTG TGGTTTGGGG TTAATGATGG AGGGAGACAC CTCCTCATAG ACGGCAGGTG 001440 001441 CCCACCTTTC AGGGAGTCTC CCAGCATGGG CGGATGCCGG GCATGAGCTG CTGTAAACTA TTTGTGGCTG TGCTGCTTGA 001520 001521 GTGACGTCTC TGTCGTGTGG GTGCCAAGTG CTTGTGTAGA AACTGTGTTC TGAGCCCCCT TTTCTGGACA CCAACTGTGT 001600 001601 CCTGTGAATG TATCGCTACT GTGAGCTGTT CCCGCCTAGC CAGGGCCATG TCTTAGGTGC AGCTGTGCCA CGGGTCAGCT 001680 001681 GAGCCACAGT CCCAGAACCA AGCTCTCGGT GTCTCGGGCC ACCATCCGCC CACCTCGGGC TGACCCCACC TCCTCCATGG 001760 001761 ACAGTGTGAG CCCCGGGCCG TGCATCCTGC TCAGTGTGGC GTCAGTGTCG GGGCTGAGCC CCTTGAGCTG CTTCAGTGAA 001840 001841 TGTACAGTGC CCGGCACGAG CTGAACCTCA TGTGTTCCAC TCCCAATAAA AGGTTGACAG GGGCTTCTCC TTCTCTGG

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Predicted Small Protein

Name	`NONHSAT079142_smProtein_1100:1285`
Length	`62`
Molecular weight	`6606.6907`
Aromaticity	`0.0655737704918`
Instability index	`75.1081967213`
Isoelectric point	`8.87701416016`
Runs	`9`
Runs residual	`0.00527605049934`
Runs probability	`0.041620051424`
Amino acid sequence	`MPRPRGCGCCCACPCDGSLVSQPVSFLPRAELPFLQESGRRCRLSWLLWGSRGTAITPPG Q`
Secondary structure	`LLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLHHHLLLLEEEEEEEEELLLLEEELLLL L`
PRMN	`-`
PiMo	`-`

@@ Line 42: / Line 42: @@
 sequence = <dnaseq>ATGTGTGGGTCCAAAGAGCTCAAATTTGTACATCTTTCCAGAAAAAGTACTACCCTTCCCCTCCCCCAAAAGTGGCTTTTTTAAAGCTTTTGTGTCATTTTCCCATTTGTGCCCATGGACACTGGGTATCCACAACTACAGCAGGAAAAGGCTTTGAGCAGAATCCCAGGACAGCTCTTGGTGGATTTGTCCTTCCTCAAGAGCAGGAGTGGATTGTTCTGAGCTGGCTTTGGTGTTTTCTTTCCCCAGAAAGCTTAGGTTTTATGCAGCTTGACACCTGGGAGAGGTGTCCAGGGTCTTAGATGTAGAAATGTGGCTTGGGAGACATTGGCCCATGACCCTAACACCAGGCGTGCAAATCCCCTTGGAGCCCAGACCCAGTGGCAGCCGGGGTTGCCGCCCACCTGCCTGTGCTGTGCACTGGGTGCCTTCTGCGCTCAGCTGCGGCCTTGTCTGTGAATCCGGAGTGCGGAGCCAGCGGGTGCCTGTAGTGGGTGGAATTGGGGTCTGCACTTGCCCCTCCGCCCCCAGGTGGGAGTCACCTGGAGCGTGAAGGGACGTGTCTCATCCCCAGTGTGTCGGACCCTGGAGACACAGCCGCAGAGCAGCCCCTTCTCATGCATGGACCTCACCTACGTCAGCCTGCTACTCCAGGAGTTCGGCTTTCCCAGGAGCAAAGTGCTGAAGCTCACTCGGAAAATTGACAATGTTGAGACCAGCTGGGCTCTGGGGGCCATTTTTCATTACATCGACTCCCTGAACAGACAGAAGAGTCCAGCCTCATAGTGGCCGAGCCATCCCTGTCCCCGTCAGCAGTGTCTGTGTGTCTGCATAAACCCTCCTGTCCTGGACGTGACTTCATCCTGAGGAGCCACAGCACAGGCCGTGCTGGCACTTTCTGCACACTGGCTCTGGGACTTGCAGAAGGCCTGGTGCTGCCCTGGCATCAGCCTCTTCCAGTCACATCTGGCCAGAGGGCTGTCTGGACCTGGGCCCTGCTCAATGCCACCTGTCTGCCTGGGCTCCAAGTGGGCAGGACCAGGACAGAACCACAGGCACACACTGAGGGGGCAGTGTGGCTCCCTGCCTGTCCCATCCCCATGCCCCGTCCGCGGGGCTGTGGCTGCTGCTGTGCATGTCCCTGCGATGGGAGTCTTGTCTCCCAGCCTGTCAGTTTCCTCCCCAGGGCAGAGCTCCCCTTCCTGCAAGAGTCTGGGAGGCGGTGCAGGCTGTCCTGGCTGCTCTGGGGAAGCCGAGGGACAGCCATAACACCCCCGGGACAGTAGGTCTGGGCGGCACCACTGGGAACTCTGGACTTGAGTGTGTTTGCCTCTTCCTTGGGTATGAATGTGTGAGTTCACCCAGAGGCCTGCTCTCCTCACACATTGTGTGGTTTGGGGTTAATGATGGAGGGAGACACCTCCTCATAGACGGCAGGTGCCCACCTTTCAGGGAGTCTCCCAGCATGGGCGGATGCCGGGCATGAGCTGCTGTAAACTATTTGTGGCTGTGCTGCTTGAGTGACGTCTCTGTCGTGTGGGTGCCAAGTGCTTGTGTAGAAACTGTGTTCTGAGCCCCCTTTTCTGGACACCAACTGTGTCCTGTGAATGTATCGCTACTGTGAGCTGTTCCCGCCTAGCCAGGGCCATGTCTTAGGTGCAGCTGTGCCACGGGTCAGCTGAGCCACAGTCCCAGAACCAAGCTCTCGGTGTCTCGGGCCACCATCCGCCCACCTCGGGCTGACCCCACCTCCTCCATGGACAGTGTGAGCCCCGGGCCGTGCATCCTGCTCAGTGTGGCGTCAGTGTCGGGGCTGAGCCCCTTGAGCTGCTTCAGTGAATGTACAGTGCCCGGCACGAGCTGAACCTCATGTGTTCCACTCCCAATAAAAGGTTGACAGGGGCTTCTCCTTCTCTGG</dnaseq>|
 }}
-[[Category:Sense]][[Category:NONHSAG031521]]
+[[Category:Sense]][[Category:NONHSAG031521]][[Category:Transcripts]]