Difference between revisions of "NONHSAT117410"

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sequence = <dnaseq>TCCCTCCAGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCTATCACATTTGTGTCCGATGAGAATGATGCCAAGATCCTCAATGATGTGCAGGATCGCTTTGAGGTCCTCCCTGTTCCTTAGTGTGTTTGTCCTAAATCCCATCACATAGGTCATGGGCATCTGATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGTCTTTGATGCTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTTTCTGTCTTCTCTCATCATATTACATCCCTTCCCTCACCCCCACGTCCGTCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTCCCCTTTTCATGCCTTATTCTGACCATGCTACGTTTTCTTCTCAGTTGAACAGACACGGTAGAAGACTCGCCCATTTTGGAATGTGACCGTCTGTCCTTCAGGAGAGGACACCAGGGTGGGGGTGAAGGAGACACTACTGCCCCCACCCCTGACAGCCCCCACCCCATGGCTTCCATCTTTTGCATCACCACCACTCCTGAACCCCCATTTCTGATTTGTCAGAATTTTTTTTTAACAAAACTAAAAATGAAA</dnaseq>|
 
sequence = <dnaseq>TCCCTCCAGGTGGCCAGAGCAGGCCGGTTTGGCACCAAGGGCTTGGCTATCACATTTGTGTCCGATGAGAATGATGCCAAGATCCTCAATGATGTGCAGGATCGCTTTGAGGTCCTCCCTGTTCCTTAGTGTGTTTGTCCTAAATCCCATCACATAGGTCATGGGCATCTGATGCATAATGGACACTTGACTGGTTCATGCCCCCTGGTCTTTGATGCTGTGTTGGGATGTTTTTCTGACCTTTATGTGGGGTTTCTGTCTTCTCTCATCATATTACATCCCTTCCCTCACCCCCACGTCCGTCCTCTGAACCCAGGCAGTACACCAGTGTCTGCATGTGTGCCGTGTGTTCCTGCCTCACTTTCCCCTTTTCATGCCTTATTCTGACCATGCTACGTTTTCTTCTCAGTTGAACAGACACGGTAGAAGACTCGCCCATTTTGGAATGTGACCGTCTGTCCTTCAGGAGAGGACACCAGGGTGGGGGTGAAGGAGACACTACTGCCCCCACCCCTGACAGCCCCCACCCCATGGCTTCCATCTTTTGCATCACCACCACTCCTGAACCCCCATTTCTGATTTGTCAGAATTTTTTTTTAACAAAACTAAAAATGAAA</dnaseq>|
 
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[[Category:Sense]][[Category:NONHSAG046112]]
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[[Category:Sense]][[Category:NONHSAG046112]][[Category:Transcripts]]

Revision as of 11:14, 16 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT117410

Source

NONCODE4.0

Same with

,

Classification

sense

Length

617 nt

Genomic location

chr6_mann_hap4-:2840936..2841627

Exon number

2

Exons

2840936..2841441,2841517..2841627

Genome context

Sequence
000001 TCCCTCCAGG TGGCCAGAGC AGGCCGGTTT GGCACCAAGG GCTTGGCTAT CACATTTGTG TCCGATGAGA ATGATGCCAA 000080
000081 GATCCTCAAT GATGTGCAGG ATCGCTTTGA GGTCCTCCCT GTTCCTTAGT GTGTTTGTCC TAAATCCCAT CACATAGGTC 000160
000161 ATGGGCATCT GATGCATAAT GGACACTTGA CTGGTTCATG CCCCCTGGTC TTTGATGCTG TGTTGGGATG TTTTTCTGAC 000240
000241 CTTTATGTGG GGTTTCTGTC TTCTCTCATC ATATTACATC CCTTCCCTCA CCCCCACGTC CGTCCTCTGA ACCCAGGCAG 000320
000321 TACACCAGTG TCTGCATGTG TGCCGTGTGT TCCTGCCTCA CTTTCCCCTT TTCATGCCTT ATTCTGACCA TGCTACGTTT 000400
000401 TCTTCTCAGT TGAACAGACA CGGTAGAAGA CTCGCCCATT TTGGAATGTG ACCGTCTGTC CTTCAGGAGA GGACACCAGG 000480
000481 GTGGGGGTGA AGGAGACACT ACTGCCCCCA CCCCTGACAG CCCCCACCCC ATGGCTTCCA TCTTTTGCAT CACCACCACT 000560
000561 CCTGAACCCC CATTTCTGAT TTGTCAGAAT TTTTTTTTAA CAAAACTAAA AATGAAA
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Predicted Small Protein

Name NONHSAT117410_smProtein_335:412
Length 26
Molecular weight 2813.553
Aromaticity 0.12
Instability index 86.84
Isoelectric point 7.66644287109
Runs 5
Runs residual 0.00830188679245
Runs probability 0.0496025437201
Amino acid sequence MCAVCSCLTFPFSCLILTMLRFLLS
Secondary structure LEEELLLLLLLHHHHHHHHHHHHHL
PRMN LLLLHHHHHHHHHHHHHHHHHHHLL
PiMo ooooTTTTTTTTTTTTTTTTTTTii