Difference between revisions of "NONHSAT016636"
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sequence = <dnaseq>ATCTACTGATTTGTATGGAACCAGCAGCGCCGATATTTTATTTCATCTTACAGAGTCTTATTTATCACTCTTTTCTTTGTGATTGTGCTTTCTTTTTTATCCATAGGATGCAGAAAATGCGATTGTGCATATGGGCGGTCAGTGGTTGGGTGGTCGTCAAATCCGAACCAATTGGGCCACTCGTAAACCACCTGCACCTAAAAGTACACAAGAAAACAACACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAATTGTACTGTGTACTGTGGAGGAATTGCGTCTGGGTTAACAGATCAGCTTATGAGACAGACATTCTCACCATTTGGACAAATTATGGAAATAAGAGTTTTCCC</dnaseq>| | sequence = <dnaseq>ATCTACTGATTTGTATGGAACCAGCAGCGCCGATATTTTATTTCATCTTACAGAGTCTTATTTATCACTCTTTTCTTTGTGATTGTGCTTTCTTTTTTATCCATAGGATGCAGAAAATGCGATTGTGCATATGGGCGGTCAGTGGTTGGGTGGTCGTCAAATCCGAACCAATTGGGCCACTCGTAAACCACCTGCACCTAAAAGTACACAAGAAAACAACACTAAGCAGTTGAGATTTGAAGATGTAGTAAACCAGTCAAGTCCAAAAAATTGTACTGTGTACTGTGGAGGAATTGCGTCTGGGTTAACAGATCAGCTTATGAGACAGACATTCTCACCATTTGGACAAATTATGGAAATAAGAGTTTTCCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]][[Category:NONHSAG007011]] | + | [[Category:Sense]][[Category:NONHSAG007011]][[Category:Transcripts]] |
Revision as of 11:17, 16 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT016636 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
372 nt |
| Genomic location |
chr10-:121336987..121338452 |
| Exon number |
3 |
| Exons |
121336987..121337047,121337153..121337248,121338238..121338452 |
| Genome context |
|
| Sequence |
000001 ATCTACTGAT TTGTATGGAA CCAGCAGCGC CGATATTTTA TTTCATCTTA CAGAGTCTTA TTTATCACTC TTTTCTTTGT 000080
000081 GATTGTGCTT TCTTTTTTAT CCATAGGATG CAGAAAATGC GATTGTGCAT ATGGGCGGTC AGTGGTTGGG TGGTCGTCAA 000160 000161 ATCCGAACCA ATTGGGCCAC TCGTAAACCA CCTGCACCTA AAAGTACACA AGAAAACAAC ACTAAGCAGT TGAGATTTGA 000240 000241 AGATGTAGTA AACCAGTCAA GTCCAAAAAA TTGTACTGTG TACTGTGGAG GAATTGCGTC TGGGTTAACA GATCAGCTTA 000320 000321 TGAGACAGAC ATTCTCACCA TTTGGACAAA TTATGGAAAT AAGAGTTTTC CC |
Predicted Small Protein
| Name | NONHSAT016636_smProtein_14:232 |
| Length | 73 |
| Molecular weight | 8375.9858 |
| Aromaticity | 0.138888888889 |
| Instability index | 51.2584722222 |
| Isoelectric point | 9.25750732422 |
| Runs | 8 |
| Runs residual | 0.0298053527981 |
| Runs probability | 0.0631403462287 |
| Amino acid sequence | MEPAAPIFYFILQSLIYHSFLCDCAFFFIHRMQKMRLCIWAVSGWVVVKSEPIGPLVNHL HLKVHKKTTLSS |
| Secondary structure | LLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLEEEEELLLLLLLHHHH EEEELLLLLLLL |
| PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLL |
| PiMo | TTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii iiiiiiiiiiii |
